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Spg018445 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018445
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:12451825..12455684
RNA-Seq ExpressionSpg018445
SyntenySpg018445
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-2351.39Show/hide
Query:  MYKSNQKLYLVSCRVFENEEFDVPKGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSES
        ++KSNQKLYL         + + P+GNR  LQTGELDK                  VEIELP+PDTLPTSAESS S+S+TW+ELY ESV+    +L  + 
Subjt:  MYKSNQKLYLVSCRVFENEEFDVPKGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSES

Query:  SYVRATPRVCSTFQEGQRVSLEEDDVLWLHAIFRAKLAGGPGGG
        S  RA   VC    EG    +  DDV WLHAIFRAK AGGPGGG
Subjt:  SYVRATPRVCSTFQEGQRVSLEEDDVLWLHAIFRAKLAGGPGGG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]3.0e-2356.64Show/hide
Query:  VFENEEFDVPKGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSESSYVRATPRVCSTFQEGQRVSLEEDDVLWLHA
        VF +    +P+GNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+S+TW+ELY ESV+    +L  + S VR    VC    EG    +  DD+ WLHA
Subjt:  VFENEEFDVPKGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSESSYVRATPRVCSTFQEGQRVSLEEDDVLWLHA

Query:  IFRAKLAGGPGGG
        +F AK AG PGGG
Subjt:  IFRAKLAGGPGGG

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]3.3e-2248.97Show/hide
Query:  MYKSNQKLYLV-SCRV--FENEEFDVPKGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSE
        ++KSNQKLYLV   R+   EN +  +P+GNR SLQT ELDKT               V IELPVPD LPTSAESS S+S+TW+ELY ESV+    +  S 
Subjt:  MYKSNQKLYLV-SCRV--FENEEFDVPKGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSE

Query:  SSYVRATPRVCSTFQEGQRVSLEEDDVLWLHAIFRAKLAGGPGGG
        ++ V +   +      G    +  DDV WLHA+FRAK  GGPGGG
Subjt:  SSYVRATPRVCSTFQEGQRVSLEEDDVLWLHAIFRAKLAGGPGGG

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]7.9e-2451.09Show/hide
Query:  LYLVSCRVFENEEFDVPKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSESSYVRATP
        L ++  R+   E  ++P+GNRSSLQTGELDKT                 VEIELPVPDTLPTSAES  S+S+TW+ELY E V+    +L  + S VRA  
Subjt:  LYLVSCRVFENEEFDVPKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSESSYVRATP

Query:  RVCSTFQEGQRVSLEEDDVLWLHAIFRAKLAGGPGGG
         VC    EG    +  DDV WLH +FRAK+AGGPGGG
Subjt:  RVCSTFQEGQRVSLEEDDVLWLHAIFRAKLAGGPGGG

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-2351.39Show/hide
Query:  MYKSNQKLYLVSCRVFENEEFDVPKGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSES
        ++KSNQKLYL         + + P+GNR  LQTGELDK                  VEIELP+PDTLPTSAESS S+S+TW+ELY ESV+    +L  + 
Subjt:  MYKSNQKLYLVSCRVFENEEFDVPKGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSES

Query:  SYVRATPRVCSTFQEGQRVSLEEDDVLWLHAIFRAKLAGGPGGG
        S  RA   VC    EG    +  DDV WLHAIFRAK AGGPGGG
Subjt:  SYVRATPRVCSTFQEGQRVSLEEDDVLWLHAIFRAKLAGGPGGG

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein6.5e-2451.39Show/hide
Query:  MYKSNQKLYLVSCRVFENEEFDVPKGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSES
        ++KSNQKLYL         + + P+GNR  LQTGELDK                  VEIELP+PDTLPTSAESS S+S+TW+ELY ESV+    +L  + 
Subjt:  MYKSNQKLYLVSCRVFENEEFDVPKGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSES

Query:  SYVRATPRVCSTFQEGQRVSLEEDDVLWLHAIFRAKLAGGPGGG
        S  RA   VC    EG    +  DDV WLHAIFRAK AGGPGGG
Subjt:  SYVRATPRVCSTFQEGQRVSLEEDDVLWLHAIFRAKLAGGPGGG

A0A5A7UAH6 CCHC-type domain-containing protein1.4e-2356.64Show/hide
Query:  VFENEEFDVPKGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSESSYVRATPRVCSTFQEGQRVSLEEDDVLWLHA
        VF +    +P+GNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+S+TW+ELY ESV+    +L  + S VR    VC    EG    +  DD+ WLHA
Subjt:  VFENEEFDVPKGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSESSYVRATPRVCSTFQEGQRVSLEEDDVLWLHA

Query:  IFRAKLAGGPGGG
        +F AK AG PGGG
Subjt:  IFRAKLAGGPGGG

A0A5A7UT17 CCHC-type domain-containing protein1.6e-2248.97Show/hide
Query:  MYKSNQKLYLV-SCRV--FENEEFDVPKGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSE
        ++KSNQKLYLV   R+   EN +  +P+GNR SLQT ELDKT               V IELPVPD LPTSAESS S+S+TW+ELY ESV+    +  S 
Subjt:  MYKSNQKLYLV-SCRV--FENEEFDVPKGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSE

Query:  SSYVRATPRVCSTFQEGQRVSLEEDDVLWLHAIFRAKLAGGPGGG
        ++ V +   +      G    +  DDV WLHA+FRAK  GGPGGG
Subjt:  SSYVRATPRVCSTFQEGQRVSLEEDDVLWLHAIFRAKLAGGPGGG

A0A5A7VIY9 Uncharacterized protein3.8e-2451.09Show/hide
Query:  LYLVSCRVFENEEFDVPKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSESSYVRATP
        L ++  R+   E  ++P+GNRSSLQTGELDKT                 VEIELPVPDTLPTSAES  S+S+TW+ELY E V+    +L  + S VRA  
Subjt:  LYLVSCRVFENEEFDVPKGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSESSYVRATP

Query:  RVCSTFQEGQRVSLEEDDVLWLHAIFRAKLAGGPGGG
         VC    EG    +  DDV WLH +FRAK+AGGPGGG
Subjt:  RVCSTFQEGQRVSLEEDDVLWLHAIFRAKLAGGPGGG

A0A5D3DR18 Gag/pol protein6.5e-2451.39Show/hide
Query:  MYKSNQKLYLVSCRVFENEEFDVPKGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSES
        ++KSNQKLYL         + + P+GNR  LQTGELDK                  VEIELP+PDTLPTSAESS S+S+TW+ELY ESV+    +L  + 
Subjt:  MYKSNQKLYLVSCRVFENEEFDVPKGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSES

Query:  SYVRATPRVCSTFQEGQRVSLEEDDVLWLHAIFRAKLAGGPGGG
        S  RA   VC    EG    +  DDV WLHAIFRAK AGGPGGG
Subjt:  SYVRATPRVCSTFQEGQRVSLEEDDVLWLHAIFRAKLAGGPGGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAAGTCGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGCCAAAAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGA
TAAGACAGTAGAGATCGAGCTCCCGGTACCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATT
ATGTAAATGTTTTGTTATTATCCGAGTCAAGTTATGTCAGGGCGACACCTCGTGTTTGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCTT
TGGCTTCACGCTATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTAGAGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTACAAGTCGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGCCAAAAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGA
TAAGACAGTAGAGATCGAGCTCCCGGTACCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATT
ATGTAAATGTTTTGTTATTATCCGAGTCAAGTTATGTCAGGGCGACACCTCGTGTTTGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCTT
TGGCTTCACGCTATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTAGAGGTTAG
Protein sequenceShow/hide protein sequence
MYKSNQKLYLVSCRVFENEEFDVPKGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSESSYVRATPRVCSTFQEGQRVSLEEDDVL
WLHAIFRAKLAGGPGGGRG