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Spg018450 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018450
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:8827874..8829782
RNA-Seq ExpressionSpg018450
SyntenySpg018450
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]8.3e-1168.75Show/hide
Query:  VQVESEALFGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS
        +++E     GY+ LLTL+VLRDNDA+VSAGR PLRQR+WECWA PTTS
Subjt:  VQVESEALFGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]7.0e-1876.81Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSFIRL----KVEIELPVPDTLPTSAESSRTSSST
        PL TLSVL DNDAVVSAG+APLRQRRWEC  GPTTSF ++     VEIELPVPD LPTSAESSR++SST
Subjt:  PLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSFIRL----KVEIELPVPDTLPTSAESSRTSSST
KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]1.7e-0868.97Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSFIRLKVEIELPVPDTLPTSAESS
        L TLSVL DND VVSAGRA LRQRRWEC           +VEIELPVPDTLPTSA+ S
Subjt:  LLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSFIRLKVEIELPVPDTLPTSAESS
TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]7.0e-1876.81Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSFIRL----KVEIELPVPDTLPTSAESSRTSSST
        PL TLSVL DNDAVVSAG+APLRQRRWEC  GPTTSF ++     VEIELPVPD LPTSAESSR++SST
Subjt:  PLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSFIRL----KVEIELPVPDTLPTSAESSRTSSST
TYK27372.1 uncharacterized protein E5676_scaffold325G00500 [Cucumis melo var. makuwa]1.7e-0868.97Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSFIRLKVEIELPVPDTLPTSAESS
        L TLSVL DND VVSAGRA LRQRRWEC           +VEIELPVPDTLPTSA+ S
Subjt:  LLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSFIRLKVEIELPVPDTLPTSAESS
TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein4.0e-1168.75Show/hide
Query:  VQVESEALFGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS
        +++E     GY+ LLTL+VLRDNDA+VSAGR PLRQR+WECWA PTTS
Subjt:  VQVESEALFGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTS
A0A5A7T7M6 Reverse transcriptase3.4e-1876.81Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSFIRL----KVEIELPVPDTLPTSAESSRTSSST
        PL TLSVL DNDAVVSAG+APLRQRRWEC  GPTTSF ++     VEIELPVPD LPTSAESSR++SST
Subjt:  PLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSFIRL----KVEIELPVPDTLPTSAESSRTSSST
A0A5A7TPS6 Retrotrans_gag domain-containing protein8.4e-0968.97Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSFIRLKVEIELPVPDTLPTSAESS
        L TLSVL DND VVSAGRA LRQRRWEC           +VEIELPVPDTLPTSA+ S
Subjt:  LLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSFIRLKVEIELPVPDTLPTSAESS
A0A5D3BTP3 Reverse transcriptase3.4e-1876.81Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSFIRL----KVEIELPVPDTLPTSAESSRTSSST
        PL TLSVL DNDAVVSAG+APLRQRRWEC  GPTTSF ++     VEIELPVPD LPTSAESSR++SST
Subjt:  PLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSFIRL----KVEIELPVPDTLPTSAESSRTSSST
A0A5D3DV36 Retrotrans_gag domain-containing protein8.4e-0968.97Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSFIRLKVEIELPVPDTLPTSAESS
        L TLSVL DND VVSAGRA LRQRRWEC           +VEIELPVPDTLPTSA+ S
Subjt:  LLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSFIRLKVEIELPVPDTLPTSAESS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTAGTTTTTCGACCATTCTGGGGTGTACAAGTTGAATCAGAAGC
TCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGAGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGG
GCCCCACTACATCATTTATACGCTTAAAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTAGTTTTTCGACCATTCTGGGGTGTACAAGTTGAATCAGAAGC
TCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGAGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGG
GCCCCACTACATCATTTATACGCTTAAAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTAG
Protein sequenceShow/hide protein sequence
MAFGMENRAQDFRAKQEDLWFSLVFRPFWGVQVESEALFGYIPLLTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTSFIRLKVEIELPVPDTLPTSAESSRTSSST