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Spg018458 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018458
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold3:8941134..8948013
RNA-Seq ExpressionSpg018458
SyntenySpg018458
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032941.1 hypothetical protein E6C27_scaffold269G00150 [Cucumis melo var. makuwa]2.0e-1864.84Show/hide
Query:  MATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGS
        MAT +EE QCL ST TR SAF+RLS+STSKK RPSTS FDRLK+T+DQ ++ M  +K K F E N++ K+HS  SS MKRK SV INTEGS
Subjt:  MATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGS

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-1862.77Show/hide
Query:  MSMATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGSL
        +SMAT EEE QC  ST  R SAF+RLS+STSKK RPSTS FDRLK+T+DQ ++ M ++K K F E N++ K+HS   S MKRK SV INTEGSL
Subjt:  MSMATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGSL

KAA0057874.1 gag protease polyprotein [Cucumis melo var. makuwa]3.0e-1965.22Show/hide
Query:  MATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGSL
        MAT EEE QC  ST TR SAF+RLS+STSKK RPSTS FDRLK+T+DQ ++ M  +KEK F E N++ K+H+  SS MKRK SV INTEGSL
Subjt:  MATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGSL

KAA0062458.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.0e-1862.77Show/hide
Query:  MSMATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGSL
        +SMAT EEE QC  S STR SAF+RLS+STSKK RPSTSVF+RLK+T+DQ ++   ++K K F E N++ K+HS   SHMKR  SV INTEGSL
Subjt:  MSMATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGSL

TYK27425.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.0e-1862.77Show/hide
Query:  MSMATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGSL
        +SMAT EEE QC  S STR SAF+RLS+STSKK RPSTSVF+RLK+T+DQ ++   ++K K F E N++ K+HS   SHMKR  SV INTEGSL
Subjt:  MSMATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7STU1 Uncharacterized protein9.5e-1964.84Show/hide
Query:  MATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGS
        MAT +EE QCL ST TR SAF+RLS+STSKK RPSTS FDRLK+T+DQ ++ M  +K K F E N++ K+HS  SS MKRK SV INTEGS
Subjt:  MATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGS

A0A5A7URU7 Gag protease polyprotein1.5e-1965.22Show/hide
Query:  MATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGSL
        MAT EEE QC  ST TR SAF+RLS+STSKK RPSTS FDRLK+T+DQ ++ M  +KEK F E N++ K+H+  SS MKRK SV INTEGSL
Subjt:  MATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGSL

A0A5A7V4E9 Retrotransposon gag protein9.5e-1962.77Show/hide
Query:  MSMATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGSL
        +SMAT EEE QC  S STR SAF+RLS+STSKK RPSTSVF+RLK+T+DQ ++   ++K K F E N++ K+HS   SHMKR  SV INTEGSL
Subjt:  MSMATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGSL

A0A5A7V7A0 Retrotransposon gag protein1.2e-1850Show/hide
Query:  MSMATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGSLKQCLVL
        +SM T EEE QC     TR S F+RLS+STSKK RPSTSVFDRLK+T DQ ++ M ++K K F E N++ K+HS   S MKRK SV INTEG++   L  
Subjt:  MSMATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGSLKQCLVL

Query:  QDAQ------VLNKGILPSHWPERDFLF
         D +      +L   I P   P+R F F
Subjt:  QDAQ------VLNKGILPSHWPERDFLF

A0A5D3DVW2 Retrotransposon gag protein9.5e-1962.77Show/hide
Query:  MSMATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGSL
        +SMAT EEE QC  S STR SAF+RLS+STSKK RPSTSVF+RLK+T+DQ ++   ++K K F E N++ K+HS   SHMKR  SV INTEGSL
Subjt:  MSMATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCACGACAGAAGAAGAAACCCAATGTTTGGTGTCTACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGACCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAGTGATCAACCTGAACAAAATATGGACAACATGAAGGAGAAATTGTTCGATGAAGTAAACAACAACAAAAAGCTGCACA
GTATCGCCTCGTCACATATGAAAAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGCAGTGCTTGGTTTTGCAGGATGCTCAGGTCTTGAACAAAGGGATC
CTGCCCTCTCATTGGCCCGAGAGGGACTTTCTGTTTAATGGTTGGACCATAAACAAGTTGTTCATTAGAGGAGCATTGGAAAACAGAGGAAAGCTGGAAAGTGCCCAGAA
ATGCGACCGCATTTTTGGAAAGGCTAAAATCAAATACGACCGCATTTCTGGAAAAACAGAGGCTGTTCCAAGTCCGTCGCGGGTCGGCAAGCTGCCTAAGGCACCGTATA
ACAACTATAGGGTTATAGATTGCATTCGTGAATCATCTATGTCGGAGTCGAGTCACAGAAATGTGGATAATGGTCCATTAGGTCCCCCTGCTAGCTCATCTACTTGTCAG
TACACGTTGAAGTCGCTGGAAAACAAAAAAGGTGACTGGAAATCGAAGAAAAGCACTGCTCGCGCAAACAAAAAAGAACCCTCGACGCCGCAGATCTGGTCATCACGTGG
TGGTCGAATCGCGTGGTACTCGGCGTTCCTAAATCTGGAACCGTGGGTCGCAGCATGGGTAACGTCGTGGTGGTCGCTCAGATCTGAAATGGGTGTCACAGAATGGGTTC
CGAGGTCGAGAATGGGGAAGGGAAAAGAGAAGGAGAAGAGAAAGAAAGAAAGAAAAAAAATCGACGGCGGCGGCGGCGGCCGACCATGGATTGAAGATGTGTTGAAGAAG
AAAGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCACGACAGAAGAAGAAACCCAATGTTTGGTGTCTACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGACCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAGTGATCAACCTGAACAAAATATGGACAACATGAAGGAGAAATTGTTCGATGAAGTAAACAACAACAAAAAGCTGCACA
GTATCGCCTCGTCACATATGAAAAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGCAGTGCTTGGTTTTGCAGGATGCTCAGGTCTTGAACAAAGGGATC
CTGCCCTCTCATTGGCCCGAGAGGGACTTTCTGTTTAATGGTTGGACCATAAACAAGTTGTTCATTAGAGGAGCATTGGAAAACAGAGGAAAGCTGGAAAGTGCCCAGAA
ATGCGACCGCATTTTTGGAAAGGCTAAAATCAAATACGACCGCATTTCTGGAAAAACAGAGGCTGTTCCAAGTCCGTCGCGGGTCGGCAAGCTGCCTAAGGCACCGTATA
ACAACTATAGGGTTATAGATTGCATTCGTGAATCATCTATGTCGGAGTCGAGTCACAGAAATGTGGATAATGGTCCATTAGGTCCCCCTGCTAGCTCATCTACTTGTCAG
TACACGTTGAAGTCGCTGGAAAACAAAAAAGGTGACTGGAAATCGAAGAAAAGCACTGCTCGCGCAAACAAAAAAGAACCCTCGACGCCGCAGATCTGGTCATCACGTGG
TGGTCGAATCGCGTGGTACTCGGCGTTCCTAAATCTGGAACCGTGGGTCGCAGCATGGGTAACGTCGTGGTGGTCGCTCAGATCTGAAATGGGTGTCACAGAATGGGTTC
CGAGGTCGAGAATGGGGAAGGGAAAAGAGAAGGAGAAGAGAAAGAAAGAAAGAAAAAAAATCGACGGCGGCGGCGGCGGCCGACCATGGATTGAAGATGTGTTGAAGAAG
AAAGAGTAG
Protein sequenceShow/hide protein sequence
MSMATTEEETQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPEQNMDNMKEKLFDEVNNNKKLHSIASSHMKRKFSVLINTEGSLKQCLVLQDAQVLNKGI
LPSHWPERDFLFNGWTINKLFIRGALENRGKLESAQKCDRIFGKAKIKYDRISGKTEAVPSPSRVGKLPKAPYNNYRVIDCIRESSMSESSHRNVDNGPLGPPASSSTCQ
YTLKSLENKKGDWKSKKSTARANKKEPSTPQIWSSRGGRIAWYSAFLNLEPWVAAWVTSWWSLRSEMGVTEWVPRSRMGKGKEKEKRKKERKKIDGGGGGRPWIEDVLKK
KE