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Spg018459 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018459
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S28
Genome locationscaffold3:6270743..6271685
RNA-Seq ExpressionSpg018459
SyntenySpg018459
Gene Ontology termsGO:0044205 - 'de novo' UMP biosynthetic process (biological process)
GO:0035672 - oligopeptide transmembrane transport (biological process)
GO:0006412 - translation (biological process)
GO:0006508 - proteolysis (biological process)
GO:0006869 - lipid transport (biological process)
GO:0019856 - pyrimidine nucleobase biosynthetic process (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0035673 - oligopeptide transmembrane transporter activity (molecular function)
GO:0005319 - lipid transporter activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
GO:0004151 - dihydroorotase activity (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR000289 - Ribosomal protein S28e


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXC03823.1 40S ribosomal protein S28 [Morus notabilis]1.2e-1542.65Show/hide
Query:  EQCLFEIRSTLRNPRRHCVDCSIFGLFLPHTNGKSKPIHGGGQALNGDDFNREQATHQHSNMSNSSNRLTIPTPLRIFSRCRTSSIFFLRKMESQIKHAV
        ++CL +    + + R+H   C   GL   ++   +   H   +A  G    R  A H  + +   + +    T   I +   + S     +MESQ+KHAV
Subjt:  EQCLFEIRSTLRNPRRHCVDCSIFGLFLPHTNGKSKPIHGGGQALNGDDFNREQATHQHSNMSNSSNRLTIPTPLRIFSRCRTSSIFFLRKMESQIKHAV

Query:  VVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        VVK MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP
Subjt:  VVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

KAE8008043.1 hypothetical protein FH972_004591 [Carpinus fangiana]1.0e-1486.27Show/hide
Query:  IFFLRKMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        +F L +MESQ+KHAVVVK MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP
Subjt:  IFFLRKMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

KAG6595421.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]1.0e-1473.53Show/hide
Query:  PTPLRIFSRCRTSSIFF---LRKMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        P+ L + +   +SSI F   L  MESQIKHA+VVK MGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Subjt:  PTPLRIFSRCRTSSIFF---LRKMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

KAG7027430.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-1562.11Show/hide
Query:  SNSSNRLTIPTPLRI----------FSRCRTSSIFFLR-----------KMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        SN   + T P P+            FSRCRTS  FF R            MESQIKHAVVVK MGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Subjt:  SNSSNRLTIPTPLRI----------FSRCRTSSIFFLR-----------KMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

XP_022134697.1 40S ribosomal protein S28-1-like [Momordica charantia]2.7e-1588.46Show/hide
Query:  SIFFLRKMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        S+ F  +MESQIKHAVVVK MGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Subjt:  SIFFLRKMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

TrEMBL top hitse value%identityAlignment
A0A0S3SUH5 Uncharacterized protein (Fragment)8.3e-1585.19Show/hide
Query:  SSIFFLR-KMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        SS FFL  +MESQ+KHA+VVK MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP
Subjt:  SSIFFLR-KMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

A0A2U1N763 YELLOW STRIPE like 66.4e-1586.27Show/hide
Query:  MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPSQGRLE
        MESQIKHAVVVK MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP Q  ++
Subjt:  MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPSQGRLE

A0A5N6QPB7 Uncharacterized protein4.9e-1586.27Show/hide
Query:  IFFLRKMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        +F L +MESQ+KHAVVVK MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP
Subjt:  IFFLRKMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

A0A6J1C0B5 40S ribosomal protein S28-1-like1.3e-1588.46Show/hide
Query:  SIFFLRKMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        S+ F  +MESQIKHAVVVK MGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Subjt:  SIFFLRKMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

W9SEX7 40S ribosomal protein S285.8e-1642.65Show/hide
Query:  EQCLFEIRSTLRNPRRHCVDCSIFGLFLPHTNGKSKPIHGGGQALNGDDFNREQATHQHSNMSNSSNRLTIPTPLRIFSRCRTSSIFFLRKMESQIKHAV
        ++CL +    + + R+H   C   GL   ++   +   H   +A  G    R  A H  + +   + +    T   I +   + S     +MESQ+KHAV
Subjt:  EQCLFEIRSTLRNPRRHCVDCSIFGLFLPHTNGKSKPIHGGGQALNGDDFNREQATHQHSNMSNSSNRLTIPTPLRIFSRCRTSSIFFLRKMESQIKHAV

Query:  VVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        VVK MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP
Subjt:  VVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

SwissProt top hitse value%identityAlignment
P34789 40S ribosomal protein S28-22.8e-1284.44Show/hide
Query:  MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        M+SQIKHAVVVK MGRTGSRGQVTQVRVKF  D +R+IMRNVKGP
Subjt:  MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

P46302 40S ribosomal protein S285.2e-1486.67Show/hide
Query:  MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        M++Q+K AVVVK MGRTGSRGQVTQVRVKFLDDQNR IMRNVKGP
Subjt:  MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

Q6PBK3 40S ribosomal protein S285.6e-0870.73Show/hide
Query:  IKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        IK A V K +GRTGS+GQ TQVRV+F+DD NR I+RNVKGP
Subjt:  IKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

Q90YP3 40S ribosomal protein S285.6e-0870.73Show/hide
Query:  IKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        IK A V K +GRTGS+GQ TQVRV+F+DD NR I+RNVKGP
Subjt:  IKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

Q9SR73 40S ribosomal protein S28-19.8e-1386.67Show/hide
Query:  MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        M+SQIKHAVVVK MGRTGSRGQVTQVRVKF  D +RYIMRNVKGP
Subjt:  MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

Arabidopsis top hitse value%identityAlignment
AT3G10090.1 Nucleic acid-binding, OB-fold-like protein7.0e-1486.67Show/hide
Query:  MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        M+SQIKHAVVVK MGRTGSRGQVTQVRVKF  D +RYIMRNVKGP
Subjt:  MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

AT5G03850.1 Nucleic acid-binding, OB-fold-like protein7.0e-1486.67Show/hide
Query:  MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        M+SQIKHAVVVK MGRTGSRGQVTQVRVKF  D +RYIMRNVKGP
Subjt:  MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP

AT5G64140.1 ribosomal protein S282.0e-1384.44Show/hide
Query:  MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
        M+SQIKHAVVVK MGRTGSRGQVTQVRVKF  D +R+IMRNVKGP
Subjt:  MESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTTGCTTGCAATGGAGTTCAAGCTTCACTTTGACTGCTACTGTCCCACTGTTGAACTCGCATTCCTTCGTAACTCTTCTCCATGGATTCTTCAATCAGTTTACTC
AAATCCACTGACTTCTCCCGAAATCAAGCTCTTGAGCATCTACAGCAAAAGCGTAAATCCAAAATGGACGAGGCTCGAATTTGAGAGGCTTTCCATTACCAGGAGTGCAA
TAAAAATGGCATTTGAGGAACAATGTCTCTTCGAAATTCGCAGCACCTTGCGAAACCCTAGACGACATTGTGTTGACTGCTCCATCTTTGGTCTCTTTCTTCCTCACACA
AACGGAAAGTCGAAGCCCATTCATGGAGGCGGGCAGGCCCTGAATGGGGACGACTTTAACAGAGAACAAGCAACTCATCAGCATTCCAATATGAGTAATAGCTCAAATCG
GCTTACAATTCCAACTCCCCTCCGGATCTTCTCCCGCTGCCGCACATCTTCGATTTTCTTCCTCAGGAAAATGGAGTCTCAAATCAAACATGCAGTGGTGGTGAAAGGAA
TGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCCAGTCAGGGAAGGCTA
GAAGGTTGCGTTGATGGAGAATTACTGTTGCCGCCATCATTTTTTCCTCTTTTAAGTGTGGATTTTAGTGACTTGTTTGCTCAAGACCTTAGGTTCTGGGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTTGCTTGCAATGGAGTTCAAGCTTCACTTTGACTGCTACTGTCCCACTGTTGAACTCGCATTCCTTCGTAACTCTTCTCCATGGATTCTTCAATCAGTTTACTC
AAATCCACTGACTTCTCCCGAAATCAAGCTCTTGAGCATCTACAGCAAAAGCGTAAATCCAAAATGGACGAGGCTCGAATTTGAGAGGCTTTCCATTACCAGGAGTGCAA
TAAAAATGGCATTTGAGGAACAATGTCTCTTCGAAATTCGCAGCACCTTGCGAAACCCTAGACGACATTGTGTTGACTGCTCCATCTTTGGTCTCTTTCTTCCTCACACA
AACGGAAAGTCGAAGCCCATTCATGGAGGCGGGCAGGCCCTGAATGGGGACGACTTTAACAGAGAACAAGCAACTCATCAGCATTCCAATATGAGTAATAGCTCAAATCG
GCTTACAATTCCAACTCCCCTCCGGATCTTCTCCCGCTGCCGCACATCTTCGATTTTCTTCCTCAGGAAAATGGAGTCTCAAATCAAACATGCAGTGGTGGTGAAAGGAA
TGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCCAGTCAGGGAAGGCTA
GAAGGTTGCGTTGATGGAGAATTACTGTTGCCGCCATCATTTTTTCCTCTTTTAAGTGTGGATTTTAGTGACTTGTTTGCTCAAGACCTTAGGTTCTGGGGTTGA
Protein sequenceShow/hide protein sequence
MLLLAMEFKLHFDCYCPTVELAFLRNSSPWILQSVYSNPLTSPEIKLLSIYSKSVNPKWTRLEFERLSITRSAIKMAFEEQCLFEIRSTLRNPRRHCVDCSIFGLFLPHT
NGKSKPIHGGGQALNGDDFNREQATHQHSNMSNSSNRLTIPTPLRIFSRCRTSSIFFLRKMESQIKHAVVVKGMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPSQGRL
EGCVDGELLLPPSFFPLLSVDFSDLFAQDLRFWG