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Spg018460 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018460
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationscaffold3:9824876..9829915
RNA-Seq ExpressionSpg018460
SyntenySpg018460
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]6.1e-0672.97Show/hide
Query:  ESGLFADSISLPFLGQDRVGSWEHGLTRWNSLLPDFR
        ESG   DSI L FLGQDR+GSWEH  TRWN LLP FR
Subjt:  ESGLFADSISLPFLGQDRVGSWEHGLTRWNSLLPDFR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]1.0e-0564.44Show/hide
Query:  ESGLFADSISLPFLGQDRVGSWEHGLTRWNSLLPDFRKSEVPTIL
        ESG  ADS+ L F GQDRV SWEH  TRWNSLLP FR+    +IL
Subjt:  ESGLFADSISLPFLGQDRVGSWEHGLTRWNSLLPDFRKSEVPTIL
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]8.0e-0671.05Show/hide
Query:  ESGLFADSISLPFLGQDRVGSWEHGLTRWNSLLPDFRK
        ESG   DSI L F GQDRVGSWEH  TRWNS +P FRK
Subjt:  ESGLFADSISLPFLGQDRVGSWEHGLTRWNSLLPDFRK
TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein3.0e-0672.97Show/hide
Query:  ESGLFADSISLPFLGQDRVGSWEHGLTRWNSLLPDFR
        ESG   DSI L FLGQDR+GSWEH  TRWN LLP FR
Subjt:  ESGLFADSISLPFLGQDRVGSWEHGLTRWNSLLPDFR
A0A5A7U2P4 Integrase catalytic domain-containing protein5.1e-0664.44Show/hide
Query:  ESGLFADSISLPFLGQDRVGSWEHGLTRWNSLLPDFRKSEVPTIL
        ESG  ADS+ L F GQDRV SWEH  TRWNSLLP FR+    +IL
Subjt:  ESGLFADSISLPFLGQDRVGSWEHGLTRWNSLLPDFRKSEVPTIL
A0A5D3C3J6 Gag/pol protein3.9e-0671.05Show/hide
Query:  ESGLFADSISLPFLGQDRVGSWEHGLTRWNSLLPDFRK
        ESG   DSI L F GQDRVGSWEH  TRWNS +P FRK
Subjt:  ESGLFADSISLPFLGQDRVGSWEHGLTRWNSLLPDFRK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGACTAGCGTCGAGACGCTAGCCCTTAGGCGTCTCGACGCTAGCATTCCTTATTCGGAAAGGCGCGAAACGGTCACAGCGTCTCGACGCTGCGACCTTAGCGTCTC
GACGCTGTGCGGCAACAGCTTACAGCGTCGCGACGCTGTGACGAGAGCGTTGCGACGCTATCGTATTTTCCAAAACAGTATGTGCGGCAGGACGGTAGCATCACGACGCT
ACGACAAAATTCCAGCCTATTTAATGTTTGCGATTAGGGCTGATTGGGCAACTTCTTTTGCACACTTGGGAGCCGTAAAACAGAAGAAAAAGAGGCTAAGGAAGCTAAAA
CAAGTGGAGGAAAAGCGGGAATCAAACCATTGTTCGTGGGGATCGTCACGGGGACGTGAGAGTGGCCTGTTCGCCGACTCAATAAGCCTACCATTTTTGGGACAAGACCG
AGTGGGGAGCTGGGAACATGGTCTTACAAGATGGAATTCACTCCTTCCCGACTTTAGGAAATCTGAGGTTCCCACAATCCTCCTCTACACAAATCCCGTGAGAATACCGG
TGCTACTGCGTGGTAGTGTTCGTGGTGAATTTGCAGCATTAAAGGAAGGATTTGCTGCTGGAATTTTCGGACTTGACAAGGGTTTGTTGGCGAAACGATCAAGAACGACT
TCTCAAGTAAGTATTCTTGATCTAGGACCATTAGGGTCCAATCTAGATCAGATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGACTAGCGTCGAGACGCTAGCCCTTAGGCGTCTCGACGCTAGCATTCCTTATTCGGAAAGGCGCGAAACGGTCACAGCGTCTCGACGCTGCGACCTTAGCGTCTC
GACGCTGTGCGGCAACAGCTTACAGCGTCGCGACGCTGTGACGAGAGCGTTGCGACGCTATCGTATTTTCCAAAACAGTATGTGCGGCAGGACGGTAGCATCACGACGCT
ACGACAAAATTCCAGCCTATTTAATGTTTGCGATTAGGGCTGATTGGGCAACTTCTTTTGCACACTTGGGAGCCGTAAAACAGAAGAAAAAGAGGCTAAGGAAGCTAAAA
CAAGTGGAGGAAAAGCGGGAATCAAACCATTGTTCGTGGGGATCGTCACGGGGACGTGAGAGTGGCCTGTTCGCCGACTCAATAAGCCTACCATTTTTGGGACAAGACCG
AGTGGGGAGCTGGGAACATGGTCTTACAAGATGGAATTCACTCCTTCCCGACTTTAGGAAATCTGAGGTTCCCACAATCCTCCTCTACACAAATCCCGTGAGAATACCGG
TGCTACTGCGTGGTAGTGTTCGTGGTGAATTTGCAGCATTAAAGGAAGGATTTGCTGCTGGAATTTTCGGACTTGACAAGGGTTTGTTGGCGAAACGATCAAGAACGACT
TCTCAAGTAAGTATTCTTGATCTAGGACCATTAGGGTCCAATCTAGATCAGATCTAG
Protein sequenceShow/hide protein sequence
MLTSVETLALRRLDASIPYSERRETVTASRRCDLSVSTLCGNSLQRRDAVTRALRRYRIFQNSMCGRTVASRRYDKIPAYLMFAIRADWATSFAHLGAVKQKKKRLRKLK
QVEEKRESNHCSWGSSRGRESGLFADSISLPFLGQDRVGSWEHGLTRWNSLLPDFRKSEVPTILLYTNPVRIPVLLRGSVRGEFAALKEGFAAGIFGLDKGLLAKRSRTT
SQVSILDLGPLGSNLDQI