; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018466 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018466
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold3:13947521..13953846
RNA-Seq ExpressionSpg018466
SyntenySpg018466
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032020.1 gag/pol protein [Cucumis melo var. makuwa]2.8e-0455Show/hide
Query:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ
        ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF +GS+SGTKS+P +S SK+
Subjt:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-0453.33Show/hide
Query:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ
        ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF +GS+SGTKS+P +S +K+
Subjt:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ
KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-0453.33Show/hide
Query:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ
        ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF +GS+SGTKS+P +S +K+
Subjt:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ
KAA0058447.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-0454.1Show/hide
Query:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQI
        ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF KGS+SGTKS+P +S +K++
Subjt:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQI
TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-0453.33Show/hide
Query:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ
        ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF +GS+SGTKS+P +S +K+
Subjt:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ
TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein3.0e-0453.33Show/hide
Query:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ
        ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF +GS+SGTKS+P +S +K+
Subjt:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ
A0A5A7SMN4 Gag/pol protein1.4e-0455Show/hide
Query:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ
        ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF +GS+SGTKS+P +S SK+
Subjt:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ
A0A5A7UUN7 Gag/pol protein6.1e-0554.1Show/hide
Query:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQI
        ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF KGS+SGTKS+P +S +K++
Subjt:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQI
A0A5A7V4M1 Gag/pol protein3.0e-0453.33Show/hide
Query:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ
        ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF +GS+SGTKS+P +S +K+
Subjt:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ
A0A5D3CPJ6 Gag/pol protein3.0e-0453.33Show/hide
Query:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ
        ++   LTTLLNELQ ++S++K K +   KGEANVA S +KF +GS+SGTKS+P +S +K+
Subjt:  RVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKSIPQASSSKQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCCTGCTCTCTCTATGGCACGAGAGGGACTTCTGTTTGCTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGATAAAGAGGTCCATGA
GGTCCTACTGAAAATTCCAGCAAGAAGGATCACAATAGCTTGTTGTTTTTCTGATATTTGGCAAGGAATTTGGAGATTTTCAATCAAGAACATTTACGCAATTGCGATTT
TGCCCAGAAAACAGCTCCAGACGCAACAGCGTCGGGACGCTTATCACCGCGTGTCTCGACGCTGTCGTGATTTCACGCTACGGACGCTTGAAATCGAGCCAGCGTCGGGA
CGTTGTTCCTTAAGTGTCTCGACGTTGTCGCGATTTCGTGCAACGATCCATGCTCGGCTTCGTGTTGTTTTAGCGCGGCCTCCCTTCGGAAAGTGTTTGCATGGATCAAT
AATAAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCCACCTTGTATTCGATACAGATGAAATGATCCAAAGCATCCATGTAGGAGACATGCGGG
TGGGGGTATCCTATGCAATGAGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGA
ATTCACTCCTTCCCCTATTGGGAAATATTCTATAGTGAGAAGAGTGCAGCTGAAAAAGGTCTTGGCCTTTACTATATATTGGACCCCTGGGGTGGGGTGAAAGGCATCTC
ATTCATTCTCCTACTCTCAGAGAATTCTCCCAAAGGCTCCCACAAGTCTCCAGCCTCTAGAAGTCTCAGAGTCATACCGGTCCTGACCACCCTCCTCAATGAGCTACAGA
TTTACAAGTCCATGCTGAAAAGCAAGGACAAGAATGTCGTGAAAGGAGAGGCCAATGTGGCCTATTCCAAGAAAAAGTTCTTGAAGGGTTCATCCTCAGGAACGAAATCT
ATACCTCAGGCTTCTTCATCGAAGCAAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCCCTGCTCTCTCTATGGCACGAGAGGGACTTCTGTTTGCTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGATAAAGAGGTCCATGA
GGTCCTACTGAAAATTCCAGCAAGAAGGATCACAATAGCTTGTTGTTTTTCTGATATTTGGCAAGGAATTTGGAGATTTTCAATCAAGAACATTTACGCAATTGCGATTT
TGCCCAGAAAACAGCTCCAGACGCAACAGCGTCGGGACGCTTATCACCGCGTGTCTCGACGCTGTCGTGATTTCACGCTACGGACGCTTGAAATCGAGCCAGCGTCGGGA
CGTTGTTCCTTAAGTGTCTCGACGTTGTCGCGATTTCGTGCAACGATCCATGCTCGGCTTCGTGTTGTTTTAGCGCGGCCTCCCTTCGGAAAGTGTTTGCATGGATCAAT
AATAAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCCACCTTGTATTCGATACAGATGAAATGATCCAAAGCATCCATGTAGGAGACATGCGGG
TGGGGGTATCCTATGCAATGAGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGA
ATTCACTCCTTCCCCTATTGGGAAATATTCTATAGTGAGAAGAGTGCAGCTGAAAAAGGTCTTGGCCTTTACTATATATTGGACCCCTGGGGTGGGGTGAAAGGCATCTC
ATTCATTCTCCTACTCTCAGAGAATTCTCCCAAAGGCTCCCACAAGTCTCCAGCCTCTAGAAGTCTCAGAGTCATACCGGTCCTGACCACCCTCCTCAATGAGCTACAGA
TTTACAAGTCCATGCTGAAAAGCAAGGACAAGAATGTCGTGAAAGGAGAGGCCAATGTGGCCTATTCCAAGAAAAAGTTCTTGAAGGGTTCATCCTCAGGAACGAAATCT
ATACCTCAGGCTTCTTCATCGAAGCAAATTTAA
Protein sequenceShow/hide protein sequence
MGPALSMAREGLLFAGWTSNRLFIRGALVLKDKEVHEVLLKIPARRITIACCFSDIWQGIWRFSIKNIYAIAILPRKQLQTQQRRDAYHRVSRRCRDFTLRTLEIEPASG
RCSLSVSTLSRFRATIHARLRVVLARPPFGKCLHGSIIRDKAGYLILVTLCDTTHLVFDTDEMIQSIHVGDMRVGVSYAMSESGQFADSISLPFQGQDRMGAGNITVQDG
IHSFPYWEIFYSEKSAAEKGLGLYYILDPWGGVKGISFILLLSENSPKGSHKSPASRSLRVIPVLTTLLNELQIYKSMLKSKDKNVVKGEANVAYSKKKFLKGSSSGTKS
IPQASSSKQI