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Spg018480 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018480
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold3:17963707..17967991
RNA-Seq ExpressionSpg018480
SyntenySpg018480
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031665.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.0e-1142.86Show/hide
Query:  RKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDL
        RK +   KES  +R+ +R  K+QK K KKK+R+ K V EE +DF  P + +TLA++FP RFL D Q E    V CH ++V+E++ +P  S         L
Subjt:  RKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDL

Query:  SSFSINDLLPLP
        S F+++DLL LP
Subjt:  SSFSINDLLPLP

KAA0032810.1 uncharacterized protein E6C27_scaffold708G00640 [Cucumis melo var. makuwa]1.4e-1041.07Show/hide
Query:  RKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDL
        RK +  +KES  +R+ +R  K+QK K KKK+R+ K V EE +DF    + +TLA++FP RFL D Q E    + CH ++  E++ +P  S        DL
Subjt:  RKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDL

Query:  SSFSINDLLPLP
        S F+++DLL LP
Subjt:  SSFSINDLLPLP

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]1.0e-1030.69Show/hide
Query:  KEIDVNPDVAHWIIKEDHTPLAVASRISKLIEESSKEKVAVKDNPLFESITSTSEQPKDTLKPH-------VMPVMMRKQSCARKESHLFRDSKRKVKSQ
        +E+      A  I+ E  +P  +  +   L++  + E V V+     + +     Q K+ L          V     RK +  +KE   +R+ ++  K+Q
Subjt:  KEIDVNPDVAHWIIKEDHTPLAVASRISKLIEESSKEKVAVKDNPLFESITSTSEQPKDTLKPH-------VMPVMMRKQSCARKESHLFRDSKRKVKSQ

Query:  KKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSINDLLPLP
        K K KKK+R+ K + EE +DF    + +TLA++FP RFL D Q E    V CH ++ +E++++P  S        DLS F++NDLL LP
Subjt:  KKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSINDLLPLP

KAA0046265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.5e-1342.11Show/hide
Query:  MMRKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPG
        M RK +  +KES  +R+ +R+ K+QK K KKK+R+ K V EE +DF  P + +T+A+ FP RFL D Q E  E +TCH ++  E++ +P+ S        
Subjt:  MMRKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPG

Query:  DLSSFSINDLLPLP
        +LS F+++DLL LP
Subjt:  DLSSFSINDLLPLP

KAA0056780.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-1040.18Show/hide
Query:  RKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDL
        RK +  +KE   +R+ +R  K+QK K KKK+++ K + EE +DF    + +TLA +FP RFL D Q E  E V CH +D +E++ +P  S        DL
Subjt:  RKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDL

Query:  SSFSINDLLPLP
          F+++DLL LP
Subjt:  SSFSINDLLPLP

TrEMBL top hitse value%identityAlignment
A0A5A7SRA6 Ty3-gypsy retrotransposon protein3.8e-1142.86Show/hide
Query:  RKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDL
        RK +   KES  +R+ +R  K+QK K KKK+R+ K V EE +DF  P + +TLA++FP RFL D Q E    V CH ++V+E++ +P  S         L
Subjt:  RKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDL

Query:  SSFSINDLLPLP
        S F+++DLL LP
Subjt:  SSFSINDLLPLP

A0A5A7TY01 Ty3-gypsy retrotransposon protein4.1e-1342.11Show/hide
Query:  MMRKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPG
        M RK +  +KES  +R+ +R+ K+QK K KKK+R+ K V EE +DF  P + +T+A+ FP RFL D Q E  E +TCH ++  E++ +P+ S        
Subjt:  MMRKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPG

Query:  DLSSFSINDLLPLP
        +LS F+++DLL LP
Subjt:  DLSSFSINDLLPLP

A0A5D3BE72 Ty3-gypsy retrotransposon protein6.6e-1140.18Show/hide
Query:  RKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDL
        RK +  +KE   +R+ +R  K+QK K KKK+++ K + EE +DF    + +TLA +FP RFL D Q E  E V CH +D +E++ +P  S        DL
Subjt:  RKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDL

Query:  SSFSINDLLPLP
          F+++DLL LP
Subjt:  SSFSINDLLPLP

A0A5D3BSG5 Uncharacterized protein5.0e-1130.69Show/hide
Query:  KEIDVNPDVAHWIIKEDHTPLAVASRISKLIEESSKEKVAVKDNPLFESITSTSEQPKDTLKPH-------VMPVMMRKQSCARKESHLFRDSKRKVKSQ
        +E+      A  I+ E  +P  +  +   L++  + E V V+     + +     Q K+ L          V     RK +  +KE   +R+ ++  K+Q
Subjt:  KEIDVNPDVAHWIIKEDHTPLAVASRISKLIEESSKEKVAVKDNPLFESITSTSEQPKDTLKPH-------VMPVMMRKQSCARKESHLFRDSKRKVKSQ

Query:  KKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSINDLLPLP
        K K KKK+R+ K + EE +DF    + +TLA++FP RFL D Q E    V CH ++ +E++++P  S        DLS F++NDLL LP
Subjt:  KKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSINDLLPLP

A0A5D3E3J4 Uncharacterized protein6.6e-1141.07Show/hide
Query:  RKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDL
        RK +  +KES  +R+ +R  K+QK K KKK+R+ K V EE +DF    + +TLA++FP RFL D Q E    + CH ++  E++ +P  S        DL
Subjt:  RKQSCARKESHLFRDSKRKVKSQKKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDL

Query:  SSFSINDLLPLP
        S F+++DLL LP
Subjt:  SSFSINDLLPLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTGCTTCCGCATGTAGTATGTGTAATAAGAATGTTGAGACAATTGATCATGCACTTTGCGGATGTAAACGAGCCAAGGCCATCTGCGATCATATTTTCCAACGA
ATTGATGGTATTTACTGATGCTGCGGTTTCTCCAAGTGGTGACGGTGCAGGATATGGTGTGGTTGTTGTTGGAAATGATTACAACGTTCGTGGAGCAATGGAAATGTTCG
AAAACAAGGCTCTTTCACTGCTGGCAGTGGAGGTTCAAGCTATTTTACATAGCCTTAGATTGATGCAACGAATGCAAATCCAAGAAGTTCAAGTTTGTTCAGATTCTCTT
AATGCGGTCCGAATGATTAACAAGGAGATTGATGTGAATCCGGATGTTGCCCATTGGATCATCAAGGAAGATCATACTCCTCTCGCTGTTGCAAGTAGGATCTCAAAATT
GATTGAAGAATCCTCTAAGGAAAAGGTTGCAGTCAAAGACAACCCGCTGTTCGAATCTATCACTTCAACATCTGAGCAGCCAAAGGATACACTAAAACCTCATGTGATGC
CTGTCATGATGCGAAAACAAAGTTGCGCACGGAAGGAGTCCCACCTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAAGAAGAAGGGAAAAAAGAAGTCAAGGAGG
TCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTTCCAAGGCGCTTTCTTGATGATAGTCAAGGAGAGGCACT
TGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAATG
ACTTATTGCCACTTCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGTGCTTCCGCATGTAGTATGTGTAATAAGAATGTTGAGACAATTGATCATGCACTTTGCGGATGTAAACGAGCCAAGGCCATCTGCGATCATATTTTCCAACGA
ATTGATGGTATTTACTGATGCTGCGGTTTCTCCAAGTGGTGACGGTGCAGGATATGGTGTGGTTGTTGTTGGAAATGATTACAACGTTCGTGGAGCAATGGAAATGTTCG
AAAACAAGGCTCTTTCACTGCTGGCAGTGGAGGTTCAAGCTATTTTACATAGCCTTAGATTGATGCAACGAATGCAAATCCAAGAAGTTCAAGTTTGTTCAGATTCTCTT
AATGCGGTCCGAATGATTAACAAGGAGATTGATGTGAATCCGGATGTTGCCCATTGGATCATCAAGGAAGATCATACTCCTCTCGCTGTTGCAAGTAGGATCTCAAAATT
GATTGAAGAATCCTCTAAGGAAAAGGTTGCAGTCAAAGACAACCCGCTGTTCGAATCTATCACTTCAACATCTGAGCAGCCAAAGGATACACTAAAACCTCATGTGATGC
CTGTCATGATGCGAAAACAAAGTTGCGCACGGAAGGAGTCCCACCTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAAGAAGAAGGGAAAAAAGAAGTCAAGGAGG
TCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTTCCAAGGCGCTTTCTTGATGATAGTCAAGGAGAGGCACT
TGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAATG
ACTTATTGCCACTTCCTTAG
Protein sequenceShow/hide protein sequence
MDVLPHVVCVIRMLRQLIMHFADVNEPRPSAIIFSNELMVFTDAAVSPSGDGAGYGVVVVGNDYNVRGAMEMFENKALSLLAVEVQAILHSLRLMQRMQIQEVQVCSDSL
NAVRMINKEIDVNPDVAHWIIKEDHTPLAVASRISKLIEESSKEKVAVKDNPLFESITSTSEQPKDTLKPHVMPVMMRKQSCARKESHLFRDSKRKVKSQKKKGKKKSRR
SKPVVEESEDFFCPPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSINDLLPLP