CuGenDBv2

Gene ID	Spg018488
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	scaffold3:5757372..5767512
RNA-Seq Expression	Spg018488
Synteny	Spg018488
Gene Ontology terms	GO:0034641 - cellular nitrogen compound metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0044260 - cellular macromolecule metabolic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0038009.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.1e-69

47.63

Show/hide

Query:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVND-HNTTKELWAKLDSIYLTKSLSNKL
        +++FEV +F+  GDF+LW+KK+RA+LVQ KV+K +D+    P N+T+ +  +M E+ +STI++YL+  VL LV++   TT ELW KL+S+YLTKSL NK+
Subjt:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVND-HNTTKELWAKLDSIYLTKSLSNKL

Query:  YLKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRG
        Y+KE+FFG+KMD SK LE+NL+EF KI +++ NIGEK+ DE + +ILLNSL E+Y EV+ AIKYG+DSLT+  V ++L+ + L+ +K   K+GE   +RG
Subjt:  YLKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRG

Query:  RPEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTEGYD-------SAEVLMAVENPVDVDWILD
        R +KK  K     GK +++R  S   G+ ++C+ CHKEGHF++NC   K+++   +E+N T+  ++AN+T GYD       SAEVLM     +   WI+D
Subjt:  RPEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTEGYD-------SAEVLMAVENPVDVDWILD

Query:  SGCSFHMTPNRECRVNW
        SGC++HMTPN++  +N+
Subjt:  SGCSFHMTPNRECRVNW

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

8.4e-75

50.63

Show/hide

Query:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLY
        +++FEV +F+G GDF+LW+KK+RA+LVQ KV+K +D+ +  PDN+T+ +  +M E+ + TI+LYL+D VL LV++  TT ELW KL+S+YLTKSL NK+Y
Subjt:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLY

Query:  LKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGR
        +KE+FFG+KMD SK LE+NLDEF KI +++ NIGEK+ DE + VILLNSL E+Y EV+ AIKYG DSLT+  V ++L+ + LE +K   K+GE   +RGR
Subjt:  LKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGR

Query:  PEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTE-------GYDSAEVLMAVENPVDVDWILDS
         EKK+ K     GK  +   RSKS GK ++C+ CHKEGHF++NC   K+++   +E+N T+  ++A +T+       GY+SAEVLM     +   WI+DS
Subjt:  PEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTE-------GYDSAEVLMAVENPVDVDWILDS

Query:  GCSFHMTPNRECRVNW
        GC+FHMTP+R+   N+
Subjt:  GCSFHMTPNRECRVNW

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

5.3e-77

51.58

Show/hide

Query:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLY
        +++FEV +F+G GDFSLW+KK+RA+LVQ KV+K +D+ +  PDN+T+ +  +M E+ +STI+LYL+D VL LV++  TT ELW KL+S+YLTKSL NK+Y
Subjt:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLY

Query:  LKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGR
        +KE+FFG+KMD SK LE+NLDEF KI +++ NIGEK+ DE + VILLNSL E+Y EV+ AIKYG+DSLT+  V ++L+ + LE +K   K+GE   +RGR
Subjt:  LKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGR

Query:  PEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTEGYD-------SAEVLMAVENPVDVDWILDS
         EKK+ K     GK  +   RSKS GK ++C+ CHKEGHF++NC   K+++   +E+N T+  ++A +T+GYD       SAEVLM     +   WI+DS
Subjt:  PEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTEGYD-------SAEVLMAVENPVDVDWILDS

Query:  GCSFHMTPNRECRVNW
        GC+FHMTP+R+   N+
Subjt:  GCSFHMTPNRECRVNW

KAA0067607.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]

7.4e-71

49.51

Show/hide

Query:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLY
        +++FE+ +F+G GDF++W+KK+R +LVQ KV+K +D+ ++ P+N+T+ +  +M E+T+STI+LYL+D VL LV++  TT ELW KL+S+YLTK L N   
Subjt:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLY

Query:  LKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGR
         KE+FF +KMD SK LE+NLDEF KI ++++NIGEK+ DE + VILLNSL E+Y EV+ AIKYG+DSLT+  V ++L+ + LE +K   K+GE   +RGR
Subjt:  LKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGR

Query:  PEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTEGYDSAEVLMAVENPVDVDWILDSGCSFHMT
         EKK+ K     GK  ++  RSKS GK ++C+ CHK GHF++NC   K+++   +E+N T+  + A +T+GY+SAEVLM     +   WI+DSGC+FHMT
Subjt:  PEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTEGYDSAEVLMAVENPVDVDWILDSGCSFHMT

Query:  PNRECRVNW
        P+R+   N+
Subjt:  PNRECRVNW

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

9.0e-77

51.27

Show/hide

Query:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLY
        +++FEV +F+G GDF+LW+KK+RA+LVQ KV+K +D+ +  PDN+T+ +  +M E+ +STI+LYL+D VL LV++  TT ELW KL+S+YLTKSL NK+Y
Subjt:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLY

Query:  LKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGR
        +KE+FFG+KMD SK LE+NLDEF KI +++ NIGEK+ DE + VILLNSL E+Y EV+ AIKYG+DSLT+  V ++L+ + LE +K   K+GE   +RGR
Subjt:  LKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGR

Query:  PEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTEGYD-------SAEVLMAVENPVDVDWILDS
         EKK+ K     GK  +   RSKS GK ++C+ CHKEGHF++NC   K+++   +E+N T+  ++A +T+GYD       SAEVLM     +   WI+DS
Subjt:  PEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTEGYD-------SAEVLMAVENPVDVDWILDS

Query:  GCSFHMTPNRECRVNW
        GC+FHMTP+R+   N+
Subjt:  GCSFHMTPNRECRVNW

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

4.1e-75

50.63

Show/hide

Query:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLY
        +++FEV +F+G GDF+LW+KK+RA+LVQ KV+K +D+ +  PDN+T+ +  +M E+ + TI+LYL+D VL LV++  TT ELW KL+S+YLTKSL NK+Y
Subjt:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLY

Query:  LKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGR
        +KE+FFG+KMD SK LE+NLDEF KI +++ NIGEK+ DE + VILLNSL E+Y EV+ AIKYG DSLT+  V ++L+ + LE +K   K+GE   +RGR
Subjt:  LKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGR

Query:  PEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTE-------GYDSAEVLMAVENPVDVDWILDS
         EKK+ K     GK  +   RSKS GK ++C+ CHKEGHF++NC   K+++   +E+N T+  ++A +T+       GY+SAEVLM     +   WI+DS
Subjt:  PEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTE-------GYDSAEVLMAVENPVDVDWILDS

Query:  GCSFHMTPNRECRVNW
        GC+FHMTP+R+   N+
Subjt:  GCSFHMTPNRECRVNW

A0A5A7UB25 Putative gag-pol polyprotein

2.6e-77

51.58

Show/hide

Query:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLY
        +++FEV +F+G GDFSLW+KK+RA+LVQ KV+K +D+ +  PDN+T+ +  +M E+ +STI+LYL+D VL LV++  TT ELW KL+S+YLTKSL NK+Y
Subjt:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLY

Query:  LKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGR
        +KE+FFG+KMD SK LE+NLDEF KI +++ NIGEK+ DE + VILLNSL E+Y EV+ AIKYG+DSLT+  V ++L+ + LE +K   K+GE   +RGR
Subjt:  LKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGR

Query:  PEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTEGYD-------SAEVLMAVENPVDVDWILDS
         EKK+ K     GK  +   RSKS GK ++C+ CHKEGHF++NC   K+++   +E+N T+  ++A +T+GYD       SAEVLM     +   WI+DS
Subjt:  PEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTEGYD-------SAEVLMAVENPVDVDWILDS

Query:  GCSFHMTPNRECRVNW
        GC+FHMTP+R+   N+
Subjt:  GCSFHMTPNRECRVNW

A0A5A7VKC2 Retrotransposon protein, putative, Ty1-copia subclass

3.6e-71

49.51

Show/hide

Query:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLY
        +++FE+ +F+G GDF++W+KK+R +LVQ KV+K +D+ ++ P+N+T+ +  +M E+T+STI+LYL+D VL LV++  TT ELW KL+S+YLTK L N   
Subjt:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLY

Query:  LKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGR
         KE+FF +KMD SK LE+NLDEF KI ++++NIGEK+ DE + VILLNSL E+Y EV+ AIKYG+DSLT+  V ++L+ + LE +K   K+GE   +RGR
Subjt:  LKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGR

Query:  PEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTEGYDSAEVLMAVENPVDVDWILDSGCSFHMT
         EKK+ K     GK  ++  RSKS GK ++C+ CHK GHF++NC   K+++   +E+N T+  + A +T+GY+SAEVLM     +   WI+DSGC+FHMT
Subjt:  PEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTEGYDSAEVLMAVENPVDVDWILDSGCSFHMT

Query:  PNRECRVNW
        P+R+   N+
Subjt:  PNRECRVNW

A0A5D3BRB2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.5e-69

47.63

Show/hide

Query:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVND-HNTTKELWAKLDSIYLTKSLSNKL
        +++FEV +F+  GDF+LW+KK+RA+LVQ KV+K +D+    P N+T+ +  +M E+ +STI++YL+  VL LV++   TT ELW KL+S+YLTKSL NK+
Subjt:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVND-HNTTKELWAKLDSIYLTKSLSNKL

Query:  YLKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRG
        Y+KE+FFG+KMD SK LE+NL+EF KI +++ NIGEK+ DE + +ILLNSL E+Y EV+ AIKYG+DSLT+  V ++L+ + L+ +K   K+GE   +RG
Subjt:  YLKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRG

Query:  RPEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTEGYD-------SAEVLMAVENPVDVDWILD
        R +KK  K     GK +++R  S   G+ ++C+ CHKEGHF++NC   K+++   +E+N T+  ++AN+T GYD       SAEVLM     +   WI+D
Subjt:  RPEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTEGYD-------SAEVLMAVENPVDVDWILD

Query:  SGCSFHMTPNRECRVNW
        SGC++HMTPN++  +N+
Subjt:  SGCSFHMTPNRECRVNW

A0A5D3DNU1 Putative gag-pol polyprotein

4.4e-77

51.27

Show/hide

Query:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLY
        +++FEV +F+G GDF+LW+KK+RA+LVQ KV+K +D+ +  PDN+T+ +  +M E+ +STI+LYL+D VL LV++  TT ELW KL+S+YLTKSL NK+Y
Subjt:  TSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLY

Query:  LKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGR
        +KE+FFG+KMD SK LE+NLDEF KI +++ NIGEK+ DE + VILLNSL E+Y EV+ AIKYG+DSLT+  V ++L+ + LE +K   K+GE   +RGR
Subjt:  LKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGR

Query:  PEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTEGYD-------SAEVLMAVENPVDVDWILDS
         EKK+ K     GK  +   RSKS GK ++C+ CHKEGHF++NC   K+++   +E+N T+  ++A +T+GYD       SAEVLM     +   WI+DS
Subjt:  PEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKK--RNESNKTEENSNANVTEGYD-------SAEVLMAVENPVDVDWILDS

Query:  GCSFHMTPNRECRVNW
        GC+FHMTP+R+   N+
Subjt:  GCSFHMTPNRECRVNW

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.7e-17

26.56

Show/hide

Query:  SKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLYL
        +K  ++ FDG+  +++WK ++RALL +Q V K +   D    N  D+ + + +    STII YL+D+ L+      T +++   LD++Y  KSL+++L L
Subjt:  SKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLYL

Query:  KERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIK-YGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGR
        ++R    K+ +   L  +   F+++  E+   G K+++  K+  LL +L   Y+ +  AI+   +++LTL  V N L  +E+   KI     +       
Subjt:  KERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIK-YGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGR

Query:  PEKKNGKSNGNRGKSENNRGRSKSVGKGK-----ECYFCHKEGHFRRNCIEFKNKKRNESNKTEENSNANVTEGYDSAEVLMAVENPVDVD---WILDSG
            N  +       +N   + K + KG      +C+ C +EGH +++C  +K    N++ + E+      + G   A ++  V N   +D   ++LDSG
Subjt:  PEKKNGKSNGNRGKSENNRGRSKSVGKGK-----ECYFCHKEGHFRRNCIEFKNKKRNESNKTEENSNANVTEGYDSAEVLMAVENPVDVD---WILDSG

Query:  CSFHM
         S H+
Subjt:  CSFHM

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.6e-42

35.13

Show/hide

Query:  KFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLYLK
        K+EV +F+G   FS W+++MR LL+QQ + K +D   +KPD M  E + ++ E   S I L+L+D+V++ + D +T + +W +L+S+Y++K+L+NKLYLK
Subjt:  KFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVNDHNTTKELWAKLDSIYLTKSLSNKLYLK

Query:  ERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGRPE
        ++ +   M    +   +L+ FN +  ++AN+G K+++E K ++LLNSL  SY+ +   I +G+ ++ L++VT++L   E + RK    +G+A  + GR  
Subjt:  ERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETRKINMKEGEAHFSRGRPE

Query:  KKNGKSN-----GNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIE-FKNKKRNESNKTEEN------SNANVTEGYDSAEVLMAVENPVDVDWILD
             SN     G RGKS+N   RSKS  + + CY C++ GHF+R+C    K K      K ++N      +N NV    +  E  M +  P + +W++D
Subjt:  KKNGKSN-----GNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIE-FKNKKRNESNKTEEN------SNANVTEGYDSAEVLMAVENPVDVDWILD

Query:  SGCSFHMTPNRE--CR
        +  S H TP R+  CR
Subjt:  SGCSFHMTPNRE--CR

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAGCAAACACTGCACACCGGTGTGGTGCTTGCCACACACACTCCGATGCTTAAGTCAATAATCGGAGGGAATATCAGCAAAACCAGAGAGCTAGAGGAAGAGAAGAG
AGAGTTTTTGGATCCCCTCTCTAAGGTTGAAATGGGACATCGAAAGAACTTCAGGGATCGAGCGGAGGGGAGGAGACTTGGCCCGCACAAGAGGGCCGAGGGTCAGCCTA
GCCGACCAAGGGTCGAGGCCGAGCGTGGGATTGGGCCTGGCCCAATCCATTCGGCCTTGGCCCAACTCTATGGGCCTAATTTCCCTCTGGGACCCATTTCCTGGTTGTGT
CTTCGTCTCAATGTTATTTTCGTGGGAAAGAAGCAGCTGGCTCGAAGTAGGGGAAATTCCTCCATTGTTGCGGCTTTCGATTATCCTGATTCCGCAGAAAGAATGACTTC
TAAGTTTGAGGTTGAACGTTTCGATGGCAAGGGAGACTTCTCGTTATGGAAGAAGAAGATGAGGGCCTTACTTGTTCAACAGAAGGTGTCGAAAGCCATAGACAAACCTG
ATGAGAAGCCCGATAACATGACAGACGAACAATTTGTTGAGATGAAGGAGATAACGTTCAGTACGATTATCTTGTACTTGGCTGACAACGTCTTGAGTCTGGTAAATGAT
CACAATACTACTAAGGAGTTATGGGCTAAGCTGGATTCGATTTATTTGACGAAGTCATTATCAAATAAATTGTATCTTAAGGAACGGTTTTTTGGCTTTAAGATGGACAC
CTCCAAAGACTTAGAACAGAATTTGGATGAGTTTAATAAGATAACTATTGAAATGGCAAACATAGGTGAGAAATTAGATGATGAAAAAAAGGTTGTGATCCTTCTGAATT
CGTTGCTTGAATCCTACAATGAGGTAAGGAATGCGATTAAGTATGGTCAAGATAGTTTAACTTTAGAGAATGTCACTAATTCTCTAAGGGCTAAGGAACTTGAGACTAGA
AAAATTAATATGAAAGAAGGAGAGGCTCATTTCTCACGCGGTAGACCTGAAAAGAAGAATGGAAAATCTAATGGCAATAGGGGAAAATCAGAAAATAACAGAGGTAGATC
AAAATCTGTTGGAAAAGGAAAGGAATGCTACTTTTGTCACAAAGAGGGACATTTTAGGAGAAACTGTATTGAGTTTAAGAACAAGAAAAGAAATGAGAGCAATAAAACTG
AAGAAAATAGTAATGCTAATGTTACTGAAGGTTATGATTCAGCAGAGGTACTTATGGCAGTTGAAAATCCAGTAGATGTTGATTGGATTTTGGATTCGGGGTGCTCATTT
CACATGACACCTAACCGAGAATGTCGAGTGAATTGGGCATTGTTGAAGCAGTTCATTATTTTCATTATTGGTTACTGGTGTGCTAAATTTGTGGGCCACCCTCACTCTTC
CTCCCTTCTGGCTTTTGCCGTGAACCCACCCCTTTGTCGGAATCGAGCGTTGCGCCGCCACCTTCCCCAGTCGTCGCCGGAGTTCGCGTCGCCGTCGCCGCCTGGTTCAC
GTCGTCGTCGCTGTGGGTTGCGTGGATTTCCCTCTCACTCTCTTCGCTCGTTCTCCTCTCCTTCTCGTGGGTTTGCTGTCCGTGGCTCTCTCTCCCTCTCAAGTCGCGTC
GCCGTCCAGCCTCGCCGTCGATCGGTTGTGCCGCATTCGGGTTGCAGCGCCGCCACCGCCCAACCCCGAGTGGAGGCTGTTCGAATCTCTTCCTCTCTCTATTCGTGTTC
CTTTGTTCGATTTGTTAGATCTCGTGTCCTAGCAGCTCGAAGCTTCAGTTCCTCTCGTTTTTGCCTCTGTCCAGCTGCTGATTCGGGTGTTTTCGAGGTCGTTTGGCGTT
TTTGCACCGTCTTTGCTCAGATCGTGGGTGTCTTGGCGTGTTTAAGCAATTCCGCGCCGTCTAATTGTTCGATTGAGTTTGAAACACTTCAACTCGAATACCCACTGCCC
AAGGAGCATTCTAACACGTTGTTAGAGTCGTATTCGCTTAAGCATGAGTCGGGTGTGAGGCACAGCACATGGCACGCAATTCATGTGGGGGAGGTGCGGAGCATGACGCG
GAAATCAGGTTTGGATGACGAGCTGGATCTTGGTGAGGAAGAGGAGAACTTCGAGGAGGAACCTTAA

mRNA sequence

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Protein sequence

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MEQTLHTGVVLATHTPMLKSIIGGNISKTRELEEEKREFLDPLSKVEMGHRKNFRDRAEGRRLGPHKRAEGQPSRPRVEAERGIGPGPIHSALAQLYGPNFPLGPISWLC
LRLNVIFVGKKQLARSRGNSSIVAAFDYPDSAERMTSKFEVERFDGKGDFSLWKKKMRALLVQQKVSKAIDKPDEKPDNMTDEQFVEMKEITFSTIILYLADNVLSLVND
HNTTKELWAKLDSIYLTKSLSNKLYLKERFFGFKMDTSKDLEQNLDEFNKITIEMANIGEKLDDEKKVVILLNSLLESYNEVRNAIKYGQDSLTLENVTNSLRAKELETR
KINMKEGEAHFSRGRPEKKNGKSNGNRGKSENNRGRSKSVGKGKECYFCHKEGHFRRNCIEFKNKKRNESNKTEENSNANVTEGYDSAEVLMAVENPVDVDWILDSGCSF
HMTPNRECRVNWALLKQFIIFIIGYWCAKFVGHPHSSSLLAFAVNPPLCRNRALRRHLPQSSPEFASPSPPGSRRRRCGLRGFPSHSLRSFSSPSRGFAVRGSLSLSSRV
AVQPRRRSVVPHSGCSAATAQPRVEAVRISSSLYSCSFVRFVRSRVLAARSFSSSRFCLCPAADSGVFEVVWRFCTVFAQIVGVLACLSNSAPSNCSIEFETLQLEYPLP
KEHSNTLLESYSLKHESGVRHSTWHAIHVGEVRSMTRKSGLDDELDLGEEEENFEEEP

Spg018488 (gene) of Sponge gourd (cylindrica) v1 genome