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Spg018498 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018498
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold3:11946180..11949077
RNA-Seq ExpressionSpg018498
SyntenySpg018498
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]9.4e-1143.61Show/hide
Query:  KNSPRGNRSGLQTTELAK-----------------TVEIELLVPDTLPTSAESSRSSSSSTLQ--------------------------EGQPVSLEEDD
        K  PRGNR GLQT EL K                  VEIEL +PDTLPTSAESS S+SS+ L+                          EG    +  DD
Subjt:  KNSPRGNRSGLQTTELAK-----------------TVEIELLVPDTLPTSAESSRSSSSSTLQ--------------------------EGQPVSLEEDD

Query:  VRWLHAIFRTKLAGGPGGGF---KSVGTKDFTL
        V WLHAIFR K AGGPGGG    KSV    F L
Subjt:  VRWLHAIFRTKLAGGPGGGF---KSVGTKDFTL

KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]1.5e-1138.12Show/hide
Query:  QVKSEALFGMVGKLIPFPTTFMKNSPRGNRSGLQTTELAKT---------------------------------VEIELLVPDTLPTSAE----------
        QV+SEALF MVGKLI +PTT MK  PRGNR  LQT EL KT                                 VEIEL VPDTLPTSA+          
Subjt:  QVKSEALFGMVGKLIPFPTTFMKNSPRGNRSGLQTTELAKT---------------------------------VEIELLVPDTLPTSAE----------

Query:  -------------------SSRSSSSSTLQEGQPVSLEEDDVRWLHAIFRTKLAGGPGGG
                           S   ++S    EG    +  DDV  +HA+F+ K AG PGGG
Subjt:  -------------------SSRSSSSSTLQEGQPVSLEEDDVRWLHAIFRTKLAGGPGGG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]3.2e-1138.36Show/hide
Query:  KAHAKPAIAESEAQDIRAKQEDLWFSLVFRAFWGVQVKSEALFGMVGKLIPFPTTFMKNSPRGNRSGLQTTELAKTVEIELLVPDTLPTSAESSRSSSSS
        K +AKPAIAES       +   + F L +     ++ +S       G  + F +  +   PRGNR  L T +L KTVEIEL VPDTLPTSAESS+S+SS+
Subjt:  KAHAKPAIAESEAQDIRAKQEDLWFSLVFRAFWGVQVKSEALFGMVGKLIPFPTTFMKNSPRGNRSGLQTTELAKTVEIELLVPDTLPTSAESSRSSSSS

Query:  TLQ--------------------------EGQPVSLEEDDVRWLHAIFRTKLAGGPGGG
         L+                          EG    +  DD+ WLHA+F  K AG PGGG
Subjt:  TLQ--------------------------EGQPVSLEEDDVRWLHAIFRTKLAGGPGGG

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]5.3e-1472.06Show/hide
Query:  QVKSEALFGMVGKLIPFPTTFMKNSPRGNRSGLQTTELAKTVEIELLVPDTLPTSAESSRSSSSSTLQ
        QV+SEALFGMV KLI +PTTFM   PRGNR   QT +L KTVEIEL VPDTLPTSAESS S+SS+ L+
Subjt:  QVKSEALFGMVGKLIPFPTTFMKNSPRGNRSGLQTTELAKTVEIELLVPDTLPTSAESSRSSSSSTLQ

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]9.4e-1143.61Show/hide
Query:  KNSPRGNRSGLQTTELAK-----------------TVEIELLVPDTLPTSAESSRSSSSSTLQ--------------------------EGQPVSLEEDD
        K  PRGNR GLQT EL K                  VEIEL +PDTLPTSAESS S+SS+ L+                          EG    +  DD
Subjt:  KNSPRGNRSGLQTTELAK-----------------TVEIELLVPDTLPTSAESSRSSSSSTLQ--------------------------EGQPVSLEEDD

Query:  VRWLHAIFRTKLAGGPGGGF---KSVGTKDFTL
        V WLHAIFR K AGGPGGG    KSV    F L
Subjt:  VRWLHAIFRTKLAGGPGGGF---KSVGTKDFTL

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein4.6e-1143.61Show/hide
Query:  KNSPRGNRSGLQTTELAK-----------------TVEIELLVPDTLPTSAESSRSSSSSTLQ--------------------------EGQPVSLEEDD
        K  PRGNR GLQT EL K                  VEIEL +PDTLPTSAESS S+SS+ L+                          EG    +  DD
Subjt:  KNSPRGNRSGLQTTELAK-----------------TVEIELLVPDTLPTSAESSRSSSSSTLQ--------------------------EGQPVSLEEDD

Query:  VRWLHAIFRTKLAGGPGGGF---KSVGTKDFTL
        V WLHAIFR K AGGPGGG    KSV    F L
Subjt:  VRWLHAIFRTKLAGGPGGGF---KSVGTKDFTL

A0A5A7TPS6 Retrotrans_gag domain-containing protein7.0e-1238.12Show/hide
Query:  QVKSEALFGMVGKLIPFPTTFMKNSPRGNRSGLQTTELAKT---------------------------------VEIELLVPDTLPTSAE----------
        QV+SEALF MVGKLI +PTT MK  PRGNR  LQT EL KT                                 VEIEL VPDTLPTSA+          
Subjt:  QVKSEALFGMVGKLIPFPTTFMKNSPRGNRSGLQTTELAKT---------------------------------VEIELLVPDTLPTSAE----------

Query:  -------------------SSRSSSSSTLQEGQPVSLEEDDVRWLHAIFRTKLAGGPGGG
                           S   ++S    EG    +  DDV  +HA+F+ K AG PGGG
Subjt:  -------------------SSRSSSSSTLQEGQPVSLEEDDVRWLHAIFRTKLAGGPGGG

A0A5A7UAH6 CCHC-type domain-containing protein1.6e-1138.36Show/hide
Query:  KAHAKPAIAESEAQDIRAKQEDLWFSLVFRAFWGVQVKSEALFGMVGKLIPFPTTFMKNSPRGNRSGLQTTELAKTVEIELLVPDTLPTSAESSRSSSSS
        K +AKPAIAES       +   + F L +     ++ +S       G  + F +  +   PRGNR  L T +L KTVEIEL VPDTLPTSAESS+S+SS+
Subjt:  KAHAKPAIAESEAQDIRAKQEDLWFSLVFRAFWGVQVKSEALFGMVGKLIPFPTTFMKNSPRGNRSGLQTTELAKTVEIELLVPDTLPTSAESSRSSSSS

Query:  TLQ--------------------------EGQPVSLEEDDVRWLHAIFRTKLAGGPGGG
         L+                          EG    +  DD+ WLHA+F  K AG PGGG
Subjt:  TLQ--------------------------EGQPVSLEEDDVRWLHAIFRTKLAGGPGGG

A0A5D3BET3 Uncharacterized protein2.6e-1472.06Show/hide
Query:  QVKSEALFGMVGKLIPFPTTFMKNSPRGNRSGLQTTELAKTVEIELLVPDTLPTSAESSRSSSSSTLQ
        QV+SEALFGMV KLI +PTTFM   PRGNR   QT +L KTVEIEL VPDTLPTSAESS S+SS+ L+
Subjt:  QVKSEALFGMVGKLIPFPTTFMKNSPRGNRSGLQTTELAKTVEIELLVPDTLPTSAESSRSSSSSTLQ

A0A5D3DR18 Gag/pol protein4.6e-1143.61Show/hide
Query:  KNSPRGNRSGLQTTELAK-----------------TVEIELLVPDTLPTSAESSRSSSSSTLQ--------------------------EGQPVSLEEDD
        K  PRGNR GLQT EL K                  VEIEL +PDTLPTSAESS S+SS+ L+                          EG    +  DD
Subjt:  KNSPRGNRSGLQTTELAK-----------------TVEIELLVPDTLPTSAESSRSSSSSTLQ--------------------------EGQPVSLEEDD

Query:  VRWLHAIFRTKLAGGPGGGF---KSVGTKDFTL
        V WLHAIFR K AGGPGGG    KSV    F L
Subjt:  VRWLHAIFRTKLAGGPGGGF---KSVGTKDFTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAAGCACA
GGATATTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTAAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTC
CATTTCCTACAACTTTCATGAAGAATTCGCCAAGAGGAAATAGGTCGGGTCTACAAACCACGGAACTAGCTAAGACTGTAGAGATCGAGCTCCTGGTGCCTGATACACTG
CCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACATTACAGGAAGGTCAACCGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGAC
TAAGCTAGCAGGTGGTCCGGGAGGGGGCTTCAAGTCGGTTGGTACCAAGGACTTCACTTTAGTCTATGACTCTTTCCACTGCACTCCCTTTCTGGCCACCAACTTGAGTG
CTTCTTTTAATTGCTTGGCCGTGGAGTTCTTAATATCATCATTACCTCTCGAGTTTAAAGGTGCTTTGACCCGGTAA
mRNA sequenceShow/hide mRNA sequence
CACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAAGCACA
GGATATTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTAAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTC
CATTTCCTACAACTTTCATGAAGAATTCGCCAAGAGGAAATAGGTCGGGTCTACAAACCACGGAACTAGCTAAGACTGTAGAGATCGAGCTCCTGGTGCCTGATACACTG
CCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACATTACAGGAAGGTCAACCGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGAC
TAAGCTAGCAGGTGGTCCGGGAGGGGGCTTCAAGTCGGTTGGTACCAAGGACTTCACTTTAGTCTATGACTCTTTCCACTGCACTCCCTTTCTGGCCACCAACTTGAGTG
CTTCTTTTAATTGCTTGGCCGTGGAGTTCTTAATATCATCATTACCTCTCGAGTTTAAAGGTGCTTTGACCCGGTAA
Protein sequenceShow/hide protein sequence
HLRERVKEEEEEDFRGFEVEEDRKAHAKPAIAESEAQDIRAKQEDLWFSLVFRAFWGVQVKSEALFGMVGKLIPFPTTFMKNSPRGNRSGLQTTELAKTVEIELLVPDTL
PTSAESSRSSSSSTLQEGQPVSLEEDDVRWLHAIFRTKLAGGPGGGFKSVGTKDFTLVYDSFHCTPFLATNLSASFNCLAVEFLISSLPLEFKGALTR