; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018503 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018503
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposable element Tf2
Genome locationscaffold3:18309576..18312733
RNA-Seq ExpressionSpg018503
SyntenySpg018503
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025901.1 hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa]6.2e-2051.54Show/hide
Query:  PSSSTYSAAVTPEKSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQM---AASSA
        PSSS+ SA   P   +  QY            +K++FQ+AT+  +KEWF  NGYLQDID  +N +FLN+KSKLLA LAQ T+DADFQR+L     A++S+
Subjt:  PSSSTYSAAVTPEKSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQM---AASSA

Query:  SPASSAQGEDK---DPDYDLDDPFLDSQPM
           SS   ED+   DP+YDLD+PFLDSQPM
Subjt:  SPASSAQGEDK---DPDYDLDDPFLDSQPM

KAA0034823.1 hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa]1.9e-2462.96Show/hide
Query:  VTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA----ASSASPASSAQGEDK--DPDYDLDD
        + K LKIK W+K+NFQ+AT+  +KEWFA N YLQDID ++N EFLNDKSKLL ALAQ T+DADFQR+L  A    +SS SP+SS Q +++  DP+YDLDD
Subjt:  VTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA----ASSASPASSAQGEDK--DPDYDLDD

Query:  PFLDSQPM
          LDSQPM
Subjt:  PFLDSQPM

KAA0049709.1 hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa]1.4e-2447.18Show/hide
Query:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILKIKWW
        MSADQYAM+LGFT VTRSRSR   IR   P ESST PP+PS NL+RPSGGVVQ+R PVSPSS   SS P  +TYS AVTP+K                  
Subjt:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILKIKWW

Query:  DKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRIL----QMAASSASPASSAQGEDK--DPDYDLDDPFLDS
                                             +SKLLAALAQ T+DADFQR+L      ++SS SP+SS Q +++  D +YDLDDP+LDS
Subjt:  DKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRIL----QMAASSASPASSAQGEDK--DPDYDLDDPFLDS

KAA0059031.1 polyprotein [Cucumis melo var. makuwa]7.8e-3165.57Show/hide
Query:  PPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEK----SNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNA
        PPRPSANL+R SG  VQ+RP  S SS   SS P S+TYS  VTP+K    ++ PQYK + K LKIKWW K+NFQ+AT+  +KEWFA NGYLQDID ++N 
Subjt:  PPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEK----SNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNA

Query:  EFLNDKSKLLAALAQTTSDADF
        EFLNDKSKLLAALAQ T+DADF
Subjt:  EFLNDKSKLLAALAQTTSDADF

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]2.3e-3051.01Show/hide
Query:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILK-IKW
        MS DQYAM+LG+T V +SRS+  GI    PMESST PPRPS NL+ P G V+Q+R   SPSS   SS    +TYS AVTP+K   P+ +  +   K I  
Subjt:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILK-IKW

Query:  WDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA---ASSASPASSAQGEDK---DPDYDLDDPFLDSQP
        +D           ++  +  NG LQDID ++NA+FLNDK K LAAL Q T DADFQR+L  A   +SS+ PA S   ED+   D +YDLDDPFLDSQP
Subjt:  WDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA---ASSASPASSAQGEDK---DPDYDLDDPFLDSQP

TrEMBL top hitse value%identityAlignment
A0A5A7SNT5 Uncharacterized protein3.0e-2051.54Show/hide
Query:  PSSSTYSAAVTPEKSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQM---AASSA
        PSSS+ SA   P   +  QY            +K++FQ+AT+  +KEWF  NGYLQDID  +N +FLN+KSKLLA LAQ T+DADFQR+L     A++S+
Subjt:  PSSSTYSAAVTPEKSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQM---AASSA

Query:  SPASSAQGEDK---DPDYDLDDPFLDSQPM
           SS   ED+   DP+YDLD+PFLDSQPM
Subjt:  SPASSAQGEDK---DPDYDLDDPFLDSQPM

A0A5A7SWC0 Uncharacterized protein9.0e-2562.96Show/hide
Query:  VTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA----ASSASPASSAQGEDK--DPDYDLDD
        + K LKIK W+K+NFQ+AT+  +KEWFA N YLQDID ++N EFLNDKSKLL ALAQ T+DADFQR+L  A    +SS SP+SS Q +++  DP+YDLDD
Subjt:  VTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA----ASSASPASSAQGEDK--DPDYDLDD

Query:  PFLDSQPM
          LDSQPM
Subjt:  PFLDSQPM

A0A5A7U8A0 Uncharacterized protein6.9e-2547.18Show/hide
Query:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILKIKWW
        MSADQYAM+LGFT VTRSRSR   IR   P ESST PP+PS NL+RPSGGVVQ+R PVSPSS   SS P  +TYS AVTP+K                  
Subjt:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILKIKWW

Query:  DKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRIL----QMAASSASPASSAQGEDK--DPDYDLDDPFLDS
                                             +SKLLAALAQ T+DADFQR+L      ++SS SP+SS Q +++  D +YDLDDP+LDS
Subjt:  DKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRIL----QMAASSASPASSAQGEDK--DPDYDLDDPFLDS

A0A5A7UZX0 Polyprotein3.8e-3165.57Show/hide
Query:  PPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEK----SNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNA
        PPRPSANL+R SG  VQ+RP  S SS   SS P S+TYS  VTP+K    ++ PQYK + K LKIKWW K+NFQ+AT+  +KEWFA NGYLQDID ++N 
Subjt:  PPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEK----SNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNA

Query:  EFLNDKSKLLAALAQTTSDADF
        EFLNDKSKLLAALAQ T+DADF
Subjt:  EFLNDKSKLLAALAQTTSDADF

A0A5D3BI61 Uncharacterized protein1.1e-3051.01Show/hide
Query:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILK-IKW
        MS DQYAM+LG+T V +SRS+  GI    PMESST PPRPS NL+ P G V+Q+R   SPSS   SS    +TYS AVTP+K   P+ +  +   K I  
Subjt:  MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILK-IKW

Query:  WDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA---ASSASPASSAQGEDK---DPDYDLDDPFLDSQP
        +D           ++  +  NG LQDID ++NA+FLNDK K LAAL Q T DADFQR+L  A   +SS+ PA S   ED+   D +YDLDDPFLDSQP
Subjt:  WDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA---ASSASPASSAQGEDK---DPDYDLDDPFLDSQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGCAGATCAATATGCAATGGAATTAGGGTTTACTCCGGTAACCCGTTCCAGATCAAGGCAAGGCGGTATACGCCCTATGCCTCCAATGGAGTCTTCTACTCCACC
TCCACGGCCTTCGGCCAACCTCGTCCGTCCTTCAGGCGGAGTCGTTCAACTGAGACCTCCTGTCTCTCCCTCTTCAGTCATGGGATCATCAATCCCATCCTCTTCAACCT
ACTCTGCGGCCGTAACACCGGAAAAGAGCAATCAACCTCAGTACAAAACAGTCACCAAGATCCTAAAGATCAAGTGGTGGGATAAATTCAATTTCCAGAACGCAACCCTC
AACAAAGTTAAAGAGTGGTTTGCAGCCAATGGATATCTTCAGGATATCGACATCAAGAGGAATGCAGAATTTCTCAATGACAAATCCAAGCTCCTAGCAGCTCTAGCACA
AACCACATCTGATGCAGATTTTCAAAGAATTCTCCAGATGGCGGCTTCAAGCGCGTCCCCAGCTTCTTCTGCTCAAGGAGAAGACAAAGATCCGGATTACGATCTGGACG
ACCCGTTCCTCGACTCACAACCCATGCGAAGATTGTTAGCAACTTTCCTAGATCGTGAGGACCTAGTTTGGCGTTTACCGGCAGATGATGATTCTATAAAAGACTTCATT
CTTGTATTGCAAAAGCATGCGCTGAGAACTCTCAAGCTATCTTCTCTTGTAAAGCTTGAATCTCACCTTGCTTTCTTTTATCAGCTAGTCGATCCTCCCAAGGGCGCCCA
AGCTGTTGTCAATCTGGAAAACAGAGGAAAGCTGGATTTTTCCCAGAAATGCGACCGCATTTCTCGGAAGGCTAAAATAAAATGCGACCACATTTCTGGAAAAACAGAGG
CCATTCCGAGTCCGTTGCGGGTCGTTTTGAACGAGATTTTTGCTCACCTAACCGGCCCACAATATAAGGCCTTGATTCGAAGTCAAATTGAAGCAGAACTCACTGGGAAG
AAGAGGATGGTGACAGAACCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTGCAGATCAATATGCAATGGAATTAGGGTTTACTCCGGTAACCCGTTCCAGATCAAGGCAAGGCGGTATACGCCCTATGCCTCCAATGGAGTCTTCTACTCCACC
TCCACGGCCTTCGGCCAACCTCGTCCGTCCTTCAGGCGGAGTCGTTCAACTGAGACCTCCTGTCTCTCCCTCTTCAGTCATGGGATCATCAATCCCATCCTCTTCAACCT
ACTCTGCGGCCGTAACACCGGAAAAGAGCAATCAACCTCAGTACAAAACAGTCACCAAGATCCTAAAGATCAAGTGGTGGGATAAATTCAATTTCCAGAACGCAACCCTC
AACAAAGTTAAAGAGTGGTTTGCAGCCAATGGATATCTTCAGGATATCGACATCAAGAGGAATGCAGAATTTCTCAATGACAAATCCAAGCTCCTAGCAGCTCTAGCACA
AACCACATCTGATGCAGATTTTCAAAGAATTCTCCAGATGGCGGCTTCAAGCGCGTCCCCAGCTTCTTCTGCTCAAGGAGAAGACAAAGATCCGGATTACGATCTGGACG
ACCCGTTCCTCGACTCACAACCCATGCGAAGATTGTTAGCAACTTTCCTAGATCGTGAGGACCTAGTTTGGCGTTTACCGGCAGATGATGATTCTATAAAAGACTTCATT
CTTGTATTGCAAAAGCATGCGCTGAGAACTCTCAAGCTATCTTCTCTTGTAAAGCTTGAATCTCACCTTGCTTTCTTTTATCAGCTAGTCGATCCTCCCAAGGGCGCCCA
AGCTGTTGTCAATCTGGAAAACAGAGGAAAGCTGGATTTTTCCCAGAAATGCGACCGCATTTCTCGGAAGGCTAAAATAAAATGCGACCACATTTCTGGAAAAACAGAGG
CCATTCCGAGTCCGTTGCGGGTCGTTTTGAACGAGATTTTTGCTCACCTAACCGGCCCACAATATAAGGCCTTGATTCGAAGTCAAATTGAAGCAGAACTCACTGGGAAG
AAGAGGATGGTGACAGAACCCTAG
Protein sequenceShow/hide protein sequence
MSADQYAMELGFTPVTRSRSRQGGIRPMPPMESSTPPPRPSANLVRPSGGVVQLRPPVSPSSVMGSSIPSSSTYSAAVTPEKSNQPQYKTVTKILKIKWWDKFNFQNATL
NKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASSASPASSAQGEDKDPDYDLDDPFLDSQPMRRLLATFLDREDLVWRLPADDDSIKDFI
LVLQKHALRTLKLSSLVKLESHLAFFYQLVDPPKGAQAVVNLENRGKLDFSQKCDRISRKAKIKCDHISGKTEAIPSPLRVVLNEIFAHLTGPQYKALIRSQIEAELTGK
KRMVTEP