; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018535 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018535
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionABC transporter B family member 26, chloroplastic
Genome locationscaffold3:10080214..10087464
RNA-Seq ExpressionSpg018535
SyntenySpg018535
Gene Ontology termsGO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsIPR011527 - ABC transporter type 1, transmembrane domain
IPR036640 - ABC transporter type 1, transmembrane domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151901.1 ABC transporter B family member 26, chloroplastic isoform X1 [Momordica charantia]1.7e-2456.62Show/hide
Query:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQE
        ++DISFFDSETVGDLTSRLGADCQQVSR IGNDLNLILRNILQ                                                     V QE
Subjt:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQE

Query:  TLSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQS
        TLSLIRTVRVYGTE EELGRYE WLGRLADVSLRQS
Subjt:  TLSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQS
XP_022151903.1 ABC transporter B family member 26, chloroplastic isoform X2 [Momordica charantia]1.7e-2456.62Show/hide
Query:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQE
        ++DISFFDSETVGDLTSRLGADCQQVSR IGNDLNLILRNILQ                                                     V QE
Subjt:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQE

Query:  TLSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQS
        TLSLIRTVRVYGTE EELGRYE WLGRLADVSLRQS
Subjt:  TLSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQS
XP_022945847.1 ABC transporter B family member 26, chloroplastic isoform X1 [Cucurbita moschata]2.9e-2456.62Show/hide
Query:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQE
        ++DISFFDSETVGDLTSRLGADCQQVSR IGNDLNLILRNILQ                                                     V QE
Subjt:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQE

Query:  TLSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQS
        TLSLIRTVRVYGTE EELGRYEMWL RLADVSLRQS
Subjt:  TLSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQS
XP_022966789.1 ABC transporter B family member 26, chloroplastic isoform X2 [Cucurbita maxima]2.9e-2456.62Show/hide
Query:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQE
        ++DISFFDSETVGDLTSRLGADCQQVSR IGNDLNLILRNILQ                                                     V QE
Subjt:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQE

Query:  TLSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQS
        TLSLIRTVRVYGTE EELGRYEMWL RLADVSLRQS
Subjt:  TLSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQS
XP_023541464.1 ABC transporter B family member 26, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]2.9e-2456.62Show/hide
Query:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQE
        ++DISFFDSETVGDLTSRLGADCQQVSR IGNDLNLILRNILQ                                                     V QE
Subjt:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQE

Query:  TLSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQS
        TLSLIRTVRVYGTE EELGRYEMWL RLADVSLRQS
Subjt:  TLSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQS
TrEMBL top hitse value%identityAlignment
A0A4P1QS51 Uncharacterized protein1.4e-2458.82Show/hide
Query:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ------------------------------------VGQETLSLIRTVRVYGT-EEE
        ++DISFFD+ETVGDLTSRLGADCQQVSR IGND+NLILRN+LQ                                    V QET SLIRTVRVYGT EEE
Subjt:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ------------------------------------VGQETLSLIRTVRVYGT-EEE

Query:  LGRYEMWLGRLADVSLRQS
        LGRY+ WLG+LAD+SLRQS
Subjt:  LGRYEMWLGRLADVSLRQS
A0A6J1DDF7 ABC transporter B family member 26, chloroplastic isoform X28.3e-2556.62Show/hide
Query:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQE
        ++DISFFDSETVGDLTSRLGADCQQVSR IGNDLNLILRNILQ                                                     V QE
Subjt:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQE

Query:  TLSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQS
        TLSLIRTVRVYGTE EELGRYE WLGRLADVSLRQS
Subjt:  TLSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQS
A0A6J1DG16 ABC transporter B family member 26, chloroplastic isoform X18.3e-2556.62Show/hide
Query:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQE
        ++DISFFDSETVGDLTSRLGADCQQVSR IGNDLNLILRNILQ                                                     V QE
Subjt:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQE

Query:  TLSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQS
        TLSLIRTVRVYGTE EELGRYE WLGRLADVSLRQS
Subjt:  TLSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQS
A0A6J1HT83 ABC transporter B family member 26, chloroplastic isoform X11.4e-2456.62Show/hide
Query:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQE
        ++DISFFDSETVGDLTSRLGADCQQVSR IGNDLNLILRNILQ                                                     V QE
Subjt:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQE

Query:  TLSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQS
        TLSLIRTVRVYGTE EELGRYEMWL RLADVSLRQS
Subjt:  TLSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQS
A0A6J1HUU3 ABC transporter B family member 26, chloroplastic isoform X21.4e-2456.62Show/hide
Query:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQE
        ++DISFFDSETVGDLTSRLGADCQQVSR IGNDLNLILRNILQ                                                     V QE
Subjt:  VEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQE

Query:  TLSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQS
        TLSLIRTVRVYGTE EELGRYEMWL RLADVSLRQS
Subjt:  TLSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQS
SwissProt top hitse value%identityAlignment
Q8RY46 ABC transporter B family member 26, chloroplastic8.3e-2246.15Show/hide
Query:  EDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQET
        +DISFFDS+TVGDLTSRLG+DCQQVSR IGNDLN+I RN+LQ                                                     V QET
Subjt:  EDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQET

Query:  LSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQSDEEITRNW
         SL+RTVRVYGTE +E  RY  WL RLAD+SLRQS      NW
Subjt:  LSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQSDEEITRNW
Arabidopsis top hitse value%identityAlignment
AT1G70610.1 transporter associated with antigen processing protein 15.9e-2346.15Show/hide
Query:  EDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQET
        +DISFFDS+TVGDLTSRLG+DCQQVSR IGNDLN+I RN+LQ                                                     V QET
Subjt:  EDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQ-----------------------------------------------------VGQET

Query:  LSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQSDEEITRNW
         SL+RTVRVYGTE +E  RY  WL RLAD+SLRQS      NW
Subjt:  LSLIRTVRVYGTE-EELGRYEMWLGRLADVSLRQSDEEITRNW
AT3G28970.1 Domain of unknown function (DUF298)6.1e-0462.96Show/hide
Query:  VGRAVRAWRLVLDGRFLLLNELCDFVE
        + RA+ AW+LVL GRF LLN  CDF+E
Subjt:  VGRAVRAWRLVLDGRFLLLNELCDFVE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGTTGTCACCTCGATAGGTGAAATGGTTGATTGGAGCTATAATGCCATATTAGAGTTAATCGGGTGCTCGGGGCGTGAAAAGATGCAAAGGAATGAAAAGAGTAA
AAGTGGAAAAAAGTCAAATCTCGGTCAACAGCAGGCTAGCGTCGAGACGCTAGCTCTTGAGCGTCTCGACGCTCACATTCCATATCAGATTAGGCGCGTAAAGCTCACAG
CGTCGAGACGCTATGATAGGAAGCGTCCCGACGCTACCTGCCCTAAACCTAAACTCCATTCCCTTTGTGAATCTTCGGTTCCTTCCATTCATTTGATTCTTCAGATACAC
CCAATCCTGCAAGCCGTTGGTAGGGCAGTTAGAGCATGGAGATTAGTTTTGGATGGGAGATTTTTGTTACTTAATGAGTTGTGTGACTTTGTTGAGGATATATCATTTTT
TGATAGTGAAACTGTTGGTGACCTTACAAGTAGGCTTGGAGCTGATTGCCAGCAAGTGTCGCGAGCCATTGGAAATGATCTTAATTTGATATTACGCAACATTCTCCAGG
TTGGACAAGAAACATTGTCTTTGATCAGAACAGTTCGTGTTTATGGGACCGAGGAGGAACTTGGAAGGTATGAGATGTGGTTGGGAAGATTAGCTGATGTGAGCTTAAGA
CAGAGTGATGAGGAGATTACTAGGAATTGGTTGATGCTGAGGAGGTCTGAGGAGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGTTGTCACCTCGATAGGTGAAATGGTTGATTGGAGCTATAATGCCATATTAGAGTTAATCGGGTGCTCGGGGCGTGAAAAGATGCAAAGGAATGAAAAGAGTAA
AAGTGGAAAAAAGTCAAATCTCGGTCAACAGCAGGCTAGCGTCGAGACGCTAGCTCTTGAGCGTCTCGACGCTCACATTCCATATCAGATTAGGCGCGTAAAGCTCACAG
CGTCGAGACGCTATGATAGGAAGCGTCCCGACGCTACCTGCCCTAAACCTAAACTCCATTCCCTTTGTGAATCTTCGGTTCCTTCCATTCATTTGATTCTTCAGATACAC
CCAATCCTGCAAGCCGTTGGTAGGGCAGTTAGAGCATGGAGATTAGTTTTGGATGGGAGATTTTTGTTACTTAATGAGTTGTGTGACTTTGTTGAGGATATATCATTTTT
TGATAGTGAAACTGTTGGTGACCTTACAAGTAGGCTTGGAGCTGATTGCCAGCAAGTGTCGCGAGCCATTGGAAATGATCTTAATTTGATATTACGCAACATTCTCCAGG
TTGGACAAGAAACATTGTCTTTGATCAGAACAGTTCGTGTTTATGGGACCGAGGAGGAACTTGGAAGGTATGAGATGTGGTTGGGAAGATTAGCTGATGTGAGCTTAAGA
CAGAGTGATGAGGAGATTACTAGGAATTGGTTGATGCTGAGGAGGTCTGAGGAGGAATAA
Protein sequenceShow/hide protein sequence
MLVVTSIGEMVDWSYNAILELIGCSGREKMQRNEKSKSGKKSNLGQQQASVETLALERLDAHIPYQIRRVKLTASRRYDRKRPDATCPKPKLHSLCESSVPSIHLILQIH
PILQAVGRAVRAWRLVLDGRFLLLNELCDFVEDISFFDSETVGDLTSRLGADCQQVSRAIGNDLNLILRNILQVGQETLSLIRTVRVYGTEEELGRYEMWLGRLADVSLR
QSDEEITRNWLMLRRSEEE