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Spg018551 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018551
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSAM_MT_RSMB_NOP domain-containing protein
Genome locationscaffold3:9482430..9482823
RNA-Seq ExpressionSpg018551
SyntenySpg018551
Gene Ontology termsGO:0001510 - RNA methylation (biological process)
GO:0006396 - RNA processing (biological process)
GO:0042254 - ribosome biogenesis (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592106.1 26S rRNA (cytosine-C(5))-methyltransferase NOP2B, partial [Cucurbita argyrosperma subsp. sororia]4.4e-2171.29Show/hide
Query:  MSNKIPTAQSSEAVEEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG-KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSK
        MSNKIPTAQSSE +EE  E          EK+DGEC+HP V DGKKR KV +N+D  NG +E+KPTVEKRKKRKFPS+EEISKAREEKRQALREKK GSK
Subjt:  MSNKIPTAQSSEAVEEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG-KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSK

Query:  K
        K
Subjt:  K

XP_022936085.1 probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase isoform X1 [Cucurbita moschata]4.4e-2171.29Show/hide
Query:  MSNKIPTAQSSEAVEEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG-KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSK
        MSNKIPTAQSSE +EE  E          EK+DGEC+HP V DGKKR KV +N+D  NG +E+KPTVEKRKKRKFPS+EEISKAREEKRQALREKK GSK
Subjt:  MSNKIPTAQSSEAVEEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG-KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSK

Query:  K
        K
Subjt:  K

XP_022936087.1 probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase isoform X2 [Cucurbita moschata]4.4e-2171.29Show/hide
Query:  MSNKIPTAQSSEAVEEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG-KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSK
        MSNKIPTAQSSE +EE  E          EK+DGEC+HP V DGKKR KV +N+D  NG +E+KPTVEKRKKRKFPS+EEISKAREEKRQALREKK GSK
Subjt:  MSNKIPTAQSSEAVEEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG-KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSK

Query:  K
        K
Subjt:  K

XP_023525424.1 probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Cucurbita pepo subsp. pepo]5.7e-2166.35Show/hide
Query:  MSNKIPTAQSSEAVEED------------NEPEKNDGECVHPPVKDGKKRK--VLENNDVVNGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKV
        MSNKIPTAQSSEA+EE+            +  EKNDGEC+HP V DGKKRK  V E ++V NG+E+KP VEKRKKRKFPS+EEISKAREEKR+ALREKK 
Subjt:  MSNKIPTAQSSEAVEED------------NEPEKNDGECVHPPVKDGKKRK--VLENNDVVNGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKV

Query:  GSKK
        G  K
Subjt:  GSKK

XP_038897895.1 probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Benincasa hispida]3.0e-2272Show/hide
Query:  MSNKIPTAQSS----EAVEEDNEP-----EKNDGECVHPPVKDGKKR-KVLENNDVVNGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK
        MSNKI TA+SS    EAVEEDN+      EKNDGEC+HP V D KKR KV +N+DV NGKE+KPTVEKRKKRKFPS+EEI++AREEKRQALREKK G+KK
Subjt:  MSNKIPTAQSS----EAVEEDNEP-----EKNDGECVHPPVKDGKKR-KVLENNDVVNGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKK

TrEMBL top hitse value%identityAlignment
A0A6J1CFT7 probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase5.2e-2066.99Show/hide
Query:  MSNKIPTAQSSE----AVEEDNEPEK-----NDGECVHPPVK--DGKKRK-VLENNDVVNGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGS
        MSNKIPTA+SS+    A+EEDNE +K     NDGEC+HP  +  +GKKRK VL+N+DV NG+E+ P  EKRKKRKFPS+ EISKAREEKRQALREKK G 
Subjt:  MSNKIPTAQSSE----AVEEDNEPEK-----NDGECVHPPVK--DGKKRK-VLENNDVVNGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGS

Query:  KKG
        KKG
Subjt:  KKG

A0A6J1F7G0 probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase isoform X22.1e-2171.29Show/hide
Query:  MSNKIPTAQSSEAVEEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG-KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSK
        MSNKIPTAQSSE +EE  E          EK+DGEC+HP V DGKKR KV +N+D  NG +E+KPTVEKRKKRKFPS+EEISKAREEKRQALREKK GSK
Subjt:  MSNKIPTAQSSEAVEEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG-KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSK

Query:  K
        K
Subjt:  K

A0A6J1FCL8 probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase isoform X12.1e-2171.29Show/hide
Query:  MSNKIPTAQSSEAVEEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG-KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSK
        MSNKIPTAQSSE +EE  E          EK+DGEC+HP V DGKKR KV +N+D  NG +E+KPTVEKRKKRKFPS+EEISKAREEKRQALREKK GSK
Subjt:  MSNKIPTAQSSEAVEEDNEP---------EKNDGECVHPPVKDGKKR-KVLENNDVVNG-KEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSK

Query:  K
        K
Subjt:  K

A0A6J1FRL9 probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase8.1e-2168.93Show/hide
Query:  MSNKIPTAQSSEAV------EEDNEPEK-----NDGECVHPPVKDGKKRK--VLENNDVVNGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVG
        MSNKIPTAQSSEA+      EED E EK     NDGEC+HP   DGKKRK  V E ++V NG+E+KP VEKRKKRKFPS+EEISKAREEKRQALREKK G
Subjt:  MSNKIPTAQSSEAV------EEDNEPEK-----NDGECVHPPVKDGKKRK--VLENNDVVNGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVG

Query:  SKK
          K
Subjt:  SKK

A0A6J1J1T4 probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase1.4e-2066.02Show/hide
Query:  MSNKIPTAQSSEAVEED-----------NEPEKNDGECVHPPVKDGKKRK--VLENNDVVNGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVG
        MSNKIPT QSSEA+EE+           +  EK DGEC+HP V DGKKRK  V E ++V NG+E+KP VEKRKKRKFPS+EEISKAREEKRQALREKK G
Subjt:  MSNKIPTAQSSEAVEED-----------NEPEKNDGECVHPPVKDGKKRK--VLENNDVVNGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVG

Query:  SKK
          K
Subjt:  SKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAATAAGATACCAACTGCTCAATCTTCAGAGGCAGTGGAAGAAGATAATGAGCCAGAGAAGAATGATGGAGAATGTGTTCACCCGCCAGTGAAGGATGGTAAAAA
GAGGAAGGTTTTGGAAAACAATGACGTTGTTAATGGGAAAGAAGCCAAGCCCACTGTGGAAAAGAGGAAGAAGAGGAAATTTCCTTCAAAAGAGGAAATCTCAAAAGCTA
GGGAAGAAAAACGACAAGCTTTGAGGGAAAAGAAAGTTGGGAGCAAGAAAGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAATAAGATACCAACTGCTCAATCTTCAGAGGCAGTGGAAGAAGATAATGAGCCAGAGAAGAATGATGGAGAATGTGTTCACCCGCCAGTGAAGGATGGTAAAAA
GAGGAAGGTTTTGGAAAACAATGACGTTGTTAATGGGAAAGAAGCCAAGCCCACTGTGGAAAAGAGGAAGAAGAGGAAATTTCCTTCAAAAGAGGAAATCTCAAAAGCTA
GGGAAGAAAAACGACAAGCTTTGAGGGAAAAGAAAGTTGGGAGCAAGAAAGGGTAA
Protein sequenceShow/hide protein sequence
MSNKIPTAQSSEAVEEDNEPEKNDGECVHPPVKDGKKRKVLENNDVVNGKEAKPTVEKRKKRKFPSKEEISKAREEKRQALREKKVGSKKG