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Spg018564 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018564
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold3:6285424..6289607
RNA-Seq ExpressionSpg018564
SyntenySpg018564
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW16203.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]2.4e-1630.73Show/hide
Query:  RKLRRLESSVNYAGERPIRRSGKRQVPNENDILECER--------FGGRDKCRVVKEVISQESPDIVILLETKRI-------------------------
        RK+ +++S +     R +R +GK         L  ++         G R K R V+  +S ++PD+V+L ETKR+                         
Subjt:  RKLRRLESSVNYAGERPIRRSGKRQVPNENDILECER--------FGGRDKCRVVKEVISQESPDIVILLETKRI-------------------------

Query:  --RGVLIMWNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGTYDPPRPKGRQEFWNELGDLSGLCGNNWCILGDFNVI
           G++I+W+     C E  +G FSV++K+ +  +   W+T  YDP +P  R++FW EL DL GL    WC+ GDFNVI
Subjt:  --RGVLIMWNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGTYDPPRPKGRQEFWNELGDLSGLCGNNWCILGDFNVI

RVW92960.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.1e-1633.33Show/hide
Query:  RKLRRLESSVNYAGERPIRRSGKRQVPNENDILECER--------FGGRDKCRVVKEVISQESPDIVILLETKRI----RGVLIMWNGTSVNCLEAQIGV
        RK+ +++S +     R +R +GK       + L  ++         G + K R V+  +S +SPD+V+L ETKR+    RG++I+W+     C E  +G 
Subjt:  RKLRRLESSVNYAGERPIRRSGKRQVPNENDILECER--------FGGRDKCRVVKEVISQESPDIVILLETKRI----RGVLIMWNGTSVNCLEAQIGV

Query:  FSVSIKITWKGKDLGWVTGTYDPPRPKGRQEFWNELGDLSGLCGNNWCILGDFNVI
        F +++K+    +   W+T  YD  +P GR++FW E  DL GL    WC+ GDF+VI
Subjt:  FSVSIKITWKGKDLGWVTGTYDPPRPKGRQEFWNELGDLSGLCGNNWCILGDFNVI

TYK11201.1 SIL1 [Cucumis melo var. makuwa]1.7e-1746.67Show/hide
Query:  VNTLDRLYRKFPCLIGPFCCITCRMAEENLDHILWRCSFARVVWDMFFASFGLQFSRHRGLREMIEEFLPYPPFREQEKFLWQAGICAII
        +NT+DRL +    L+GPF C  C+ A+E+LD++ W C   R VW+ F   F   F   R +R  IEEFL +PPFRE+   LW AG+CA+I
Subjt:  VNTLDRLYRKFPCLIGPFCCITCRMAEENLDHILWRCSFARVVWDMFFASFGLQFSRHRGLREMIEEFLPYPPFREQEKFLWQAGICAII

XP_028075126.1 uncharacterized protein LOC114277426 [Camellia sinensis]1.9e-1636.36Show/hide
Query:  RDKCRVVKEVISQESPDIVILLETK---------------------------RIRGVLIMWNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGTYDPPR
        R K  VVK+++  + PD+V+  ETK                           R  G+LIMW+   V+  E  +GVFS+SIK   +     W+TG Y P R
Subjt:  RDKCRVVKEVISQESPDIVILLETK---------------------------RIRGVLIMWNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGTYDPPR

Query:  PKGRQEFWNELGDLSGLCGNNWCILGDFNVIH---ERVN--TLDRLYRKFPCLI
        P  RQ++W+ELG L GLC  NWC+  DFNV+    E++N  + +R  R F   I
Subjt:  PKGRQEFWNELGDLSGLCGNNWCILGDFNVIH---ERVN--TLDRLYRKFPCLI

XP_028093340.1 uncharacterized protein LOC114293463 [Camellia sinensis]1.1e-1637.58Show/hide
Query:  VVKEVISQESPDIVILLETK---------------------------RIRGVLIMWNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGTYDPPRPKGRQ
        VVKEV+  + PDIV+  ETK                           R  G+LIMW+   V+  E   GVFS+SI    +   + W+TG Y P +P  RQ
Subjt:  VVKEVISQESPDIVILLETK---------------------------RIRGVLIMWNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGTYDPPRPKGRQ

Query:  EFWNELGDLSGLCGNNWCILGDFNVIH---ERVN--TLDRLYRKFPCLI
        E+W+EL  L GLC  NWC+ GDFNV+    E++N  +  R  R F   I
Subjt:  EFWNELGDLSGLCGNNWCILGDFNVIH---ERVN--TLDRLYRKFPCLI

TrEMBL top hitse value%identityAlignment
A0A438BZ12 LINE-1 retrotransposable element ORF2 protein1.2e-1630.73Show/hide
Query:  RKLRRLESSVNYAGERPIRRSGKRQVPNENDILECER--------FGGRDKCRVVKEVISQESPDIVILLETKRI-------------------------
        RK+ +++S +     R +R +GK         L  ++         G R K R V+  +S ++PD+V+L ETKR+                         
Subjt:  RKLRRLESSVNYAGERPIRRSGKRQVPNENDILECER--------FGGRDKCRVVKEVISQESPDIVILLETKRI-------------------------

Query:  --RGVLIMWNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGTYDPPRPKGRQEFWNELGDLSGLCGNNWCILGDFNVI
           G++I+W+     C E  +G FSV++K+ +  +   W+T  YDP +P  R++FW EL DL GL    WC+ GDFNVI
Subjt:  --RGVLIMWNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGTYDPPRPKGRQEFWNELGDLSGLCGNNWCILGDFNVI

A0A438I8C7 Transposon TX1 uncharacterized 149 kDa protein5.3e-1733.33Show/hide
Query:  RKLRRLESSVNYAGERPIRRSGKRQVPNENDILECER--------FGGRDKCRVVKEVISQESPDIVILLETKRI----RGVLIMWNGTSVNCLEAQIGV
        RK+ +++S +     R +R +GK       + L  ++         G + K R V+  +S +SPD+V+L ETKR+    RG++I+W+     C E  +G 
Subjt:  RKLRRLESSVNYAGERPIRRSGKRQVPNENDILECER--------FGGRDKCRVVKEVISQESPDIVILLETKRI----RGVLIMWNGTSVNCLEAQIGV

Query:  FSVSIKITWKGKDLGWVTGTYDPPRPKGRQEFWNELGDLSGLCGNNWCILGDFNVI
        F +++K+    +   W+T  YD  +P GR++FW E  DL GL    WC+ GDF+VI
Subjt:  FSVSIKITWKGKDLGWVTGTYDPPRPKGRQEFWNELGDLSGLCGNNWCILGDFNVI

A0A5D3CHC7 SIL18.1e-1846.67Show/hide
Query:  VNTLDRLYRKFPCLIGPFCCITCRMAEENLDHILWRCSFARVVWDMFFASFGLQFSRHRGLREMIEEFLPYPPFREQEKFLWQAGICAII
        +NT+DRL +    L+GPF C  C+ A+E+LD++ W C   R VW+ F   F   F   R +R  IEEFL +PPFRE+   LW AG+CA+I
Subjt:  VNTLDRLYRKFPCLIGPFCCITCRMAEENLDHILWRCSFARVVWDMFFASFGLQFSRHRGLREMIEEFLPYPPFREQEKFLWQAGICAII

A0A5E4F090 Reverse transcriptase domain-containing protein (Fragment)2.0e-1638.35Show/hide
Query:  GGRDKCRVVKEVISQESPDIVILLETK---------------------------RIRGVLIMWNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGTYDP
        G R K  +VKE + +  PDIVILLETK                           R  G+ ++WN  SV+ +++ +G FSVSI+I        W++G Y P
Subjt:  GGRDKCRVVKEVISQESPDIVILLETK---------------------------RIRGVLIMWNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGTYDP

Query:  PRPKGRQEFWNELGDLSGLCGNNWCILGDFNVI
         R + R  FW EL DL G CG+ WC+ GDFNV+
Subjt:  PRPKGRQEFWNELGDLSGLCGNNWCILGDFNVI

M5WJ76 Reverse transcriptase domain-containing protein (Fragment)1.5e-1638.35Show/hide
Query:  GGRDKCRVVKEVISQESPDIVILLETK---------------------------RIRGVLIMWNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGTYDP
        G R K  +VKE + +  PDIVILLETK                           R  G+ ++WN  SV+ +++ +G FSVSI+I        W++G Y P
Subjt:  GGRDKCRVVKEVISQESPDIVILLETK---------------------------RIRGVLIMWNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGTYDP

Query:  PRPKGRQEFWNELGDLSGLCGNNWCILGDFNVI
         R + R  FW EL DL G CG+ WC+ GDFNV+
Subjt:  PRPKGRQEFWNELGDLSGLCGNNWCILGDFNVI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G10613.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.0e-0430.84Show/hide
Query:  VNTLDRLYRK-----FPCLIGPFCCITCRMAEENLDHILWRCSFARVVWDMFFASFGL---QFSRHRGLREMIEEFLPYPPFREQEKFLWQAGICAIIWG
        ++ LDRL  +     +   I P CC+ C  + E  DH++  C F+  +W+M  A   L   QF     L   I+      P     K + QA +CAI   
Subjt:  VNTLDRLYRK-----FPCLIGPFCCITCRMAEENLDHILWRCSFARVVWDMFFASFGL---QFSRHRGLREMIEEFLPYPPFREQEKFLWQAGICAIIWG

Query:  LWGERNN
         W +RNN
Subjt:  LWGERNN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGCAACCGGGGTGCGTCGATTGGGATAAGAGAAGTTTCGGTTGATCAAACCCCCACGAGTCACTTGGTTGATGATAAAGAAGTTAAATCCCCTATCCATAA
GAAAGGGGACTCAAAAAAAGTAGATAGGAAATTGAGAAGATTGGAGTCATCGGTGAACTATGCAGGAGAAAGACCTATCAGGAGGTCGGGGAAGCGTCAGGTTCCAAATG
AAAATGATATCCTGGAATGTGAGAGGTTTGGGGGGAGGGATAAGTGTAGAGTGGTGAAAGAAGTTATCTCTCAGGAATCTCCGGACATTGTGATTTTGTTGGAGACCAAG
CGTATAAGAGGAGTGCTCATTATGTGGAACGGTACTTCTGTGAACTGTTTGGAGGCGCAGATAGGGGTGTTCTCTGTGTCTATTAAAATTACCTGGAAGGGCAAGGATCT
GGGGTGGGTCACCGGTACCTATGATCCCCCAAGGCCCAAAGGTAGACAAGAGTTTTGGAATGAGCTTGGGGATTTATCTGGATTATGTGGGAACAACTGGTGCATCTTGG
GGGATTTTAATGTTATCCATGAAAGAGTTAATACTCTTGATCGGCTCTATAGAAAGTTCCCTTGCTTGATCGGACCTTTTTGTTGCATTACCTGTCGGATGGCGGAGGAA
AACCTCGACCATATTTTGTGGAGATGCAGTTTTGCTAGGGTTGTGTGGGACATGTTTTTTGCTTCGTTTGGTTTGCAGTTTTCCAGACATAGGGGCCTTAGAGAGATGAT
CGAGGAGTTCCTCCCCTATCCCCCTTTTCGTGAACAAGAGAAATTCTTGTGGCAAGCGGGGATTTGTGCTATTATTTGGGGGCTTTGGGGTGAGAGAAATAATAGGACGT
TTAGAGGGATTCGACTGAGCCATGGGCAACATGCCCTGGACAAGCATGACCGTGACACTGCGCACTTAGCCCAGCGTCATGCTACGCAACAAACACATGAATTACGCGCC
ATGCAACGCAACCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGCAACCGGGGTGCGTCGATTGGGATAAGAGAAGTTTCGGTTGATCAAACCCCCACGAGTCACTTGGTTGATGATAAAGAAGTTAAATCCCCTATCCATAA
GAAAGGGGACTCAAAAAAAGTAGATAGGAAATTGAGAAGATTGGAGTCATCGGTGAACTATGCAGGAGAAAGACCTATCAGGAGGTCGGGGAAGCGTCAGGTTCCAAATG
AAAATGATATCCTGGAATGTGAGAGGTTTGGGGGGAGGGATAAGTGTAGAGTGGTGAAAGAAGTTATCTCTCAGGAATCTCCGGACATTGTGATTTTGTTGGAGACCAAG
CGTATAAGAGGAGTGCTCATTATGTGGAACGGTACTTCTGTGAACTGTTTGGAGGCGCAGATAGGGGTGTTCTCTGTGTCTATTAAAATTACCTGGAAGGGCAAGGATCT
GGGGTGGGTCACCGGTACCTATGATCCCCCAAGGCCCAAAGGTAGACAAGAGTTTTGGAATGAGCTTGGGGATTTATCTGGATTATGTGGGAACAACTGGTGCATCTTGG
GGGATTTTAATGTTATCCATGAAAGAGTTAATACTCTTGATCGGCTCTATAGAAAGTTCCCTTGCTTGATCGGACCTTTTTGTTGCATTACCTGTCGGATGGCGGAGGAA
AACCTCGACCATATTTTGTGGAGATGCAGTTTTGCTAGGGTTGTGTGGGACATGTTTTTTGCTTCGTTTGGTTTGCAGTTTTCCAGACATAGGGGCCTTAGAGAGATGAT
CGAGGAGTTCCTCCCCTATCCCCCTTTTCGTGAACAAGAGAAATTCTTGTGGCAAGCGGGGATTTGTGCTATTATTTGGGGGCTTTGGGGTGAGAGAAATAATAGGACGT
TTAGAGGGATTCGACTGAGCCATGGGCAACATGCCCTGGACAAGCATGACCGTGACACTGCGCACTTAGCCCAGCGTCATGCTACGCAACAAACACATGAATTACGCGCC
ATGCAACGCAACCACTAG
Protein sequenceShow/hide protein sequence
MVFGNRGASIGIREVSVDQTPTSHLVDDKEVKSPIHKKGDSKKVDRKLRRLESSVNYAGERPIRRSGKRQVPNENDILECERFGGRDKCRVVKEVISQESPDIVILLETK
RIRGVLIMWNGTSVNCLEAQIGVFSVSIKITWKGKDLGWVTGTYDPPRPKGRQEFWNELGDLSGLCGNNWCILGDFNVIHERVNTLDRLYRKFPCLIGPFCCITCRMAEE
NLDHILWRCSFARVVWDMFFASFGLQFSRHRGLREMIEEFLPYPPFREQEKFLWQAGICAIIWGLWGERNNRTFRGIRLSHGQHALDKHDRDTAHLAQRHATQQTHELRA
MQRNH