CuGenDBv2

Gene ID	Spg018569
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	agamous-like MADS-box protein AGL62
Genome location	scaffold3:10266802..10267663
RNA-Seq Expression	Spg018569
Synteny	Spg018569
Gene Ontology terms	GO:0016020 - membrane (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR002100 - Transcription factor, MADS-box IPR036879 - Transcription factor, MADS-box superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0041553.1 agamous-like MADS-box protein AGL62 [Cucumis melo var. makuwa]

2.1e-16

50.46

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Query:  SGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETT
        S +++T  + R  L     E+S+LCG EVAI V S N KVF FGH D D+LLDR+L  NLS     E Y+ VAEFN +FA  A E E EKK A  LI   
Subjt:  SGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETT

Query:  ENFRKNDRF
        E+ RKN  F
Subjt:  ENFRKNDRF

XP_004147877.3 agamous-like MADS-box protein AGL62 [Cucumis sativus]

6.2e-16

49.54

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Query:  SGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETT
        S +++T  + R  L     E+S+LCG EVAI V S N K+F FGH D D+LLDR+L  NLS     E Y+ VAEFN +FA  A E E EKK A  LI   
Subjt:  SGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETT

Query:  ENFRKNDRF
        E+ RKN  F
Subjt:  ENFRKNDRF

XP_008466532.1 PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo]

2.1e-16

50.46

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Query:  SGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETT
        S +++T  + R  L     E+S+LCG EVAI V S N KVF FGH D D+LLDR+L  NLS     E Y+ VAEFN +FA  A E E EKK A  LI   
Subjt:  SGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETT

Query:  ENFRKNDRF
        E+ RKN  F
Subjt:  ENFRKNDRF

XP_038875004.1 agamous-like MADS-box protein AGL62 [Benincasa hispida]

7.4e-17

52.29

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Query:  SGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETT
        S +++T  + R  L     E+SILCGVEVAI V S N KVF FGH D + LLDR+L +NLS     E Y+ V EFN +FA +A E E EKK AT+LI   
Subjt:  SGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETT

Query:  ENFRKNDRF
        E+ RKN RF
Subjt:  ENFRKNDRF

XP_038896633.1 agamous-like MADS-box protein AGL62 [Benincasa hispida]

1.3e-16

56.04

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Query:  AEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETTENFRKNDRF
        +E++ILCGVEVAI V S N K+F FGH D D+LLDR+L  NLS     E Y+ VAEFN +F  +A E E EKK A  LI   EN RKN  F
Subjt:  AEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETTENFRKNDRF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LE01 MADS-box domain-containing protein

3.0e-16

49.54

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Query:  SGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETT
        S +++T  + R  L     E+S+LCG EVAI V S N K+F FGH D D+LLDR+L  NLS     E Y+ VAEFN +FA  A E E EKK A  LI   
Subjt:  SGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETT

Query:  ENFRKNDRF
        E+ RKN  F
Subjt:  ENFRKNDRF

A0A1S3CRI8 agamous-like MADS-box protein AGL62

1.0e-16

50.46

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Query:  SGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETT
        S +++T  + R  L     E+S+LCG EVAI V S N KVF FGH D D+LLDR+L  NLS     E Y+ VAEFN +FA  A E E EKK A  LI   
Subjt:  SGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETT

Query:  ENFRKNDRF
        E+ RKN  F
Subjt:  ENFRKNDRF

A0A5D3D807 Agamous-like MADS-box protein AGL62

1.0e-16

50.46

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Query:  SGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETT
        S +++T  + R  L     E+S+LCG EVAI V S N KVF FGH D D+LLDR+L  NLS     E Y+ VAEFN +FA  A E E EKK A  LI   
Subjt:  SGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETT

Query:  ENFRKNDRF
        E+ RKN  F
Subjt:  ENFRKNDRF

A0A6J1H4M6 agamous-like MADS-box protein AGL62

8.8e-16

49.54

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Query:  SGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETT
        S +++T  + R  L     E+S+LCG EVAI V S N KVF FGH D D+LLDR+L  NLS     E YV VAEFN +FA L  E E EKK A  LI+ +
Subjt:  SGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETT

Query:  ENFRKNDRF
        E  R +  F
Subjt:  ENFRKNDRF

A0A6J1KVC9 agamous-like MADS-box protein AGL62

3.3e-15

48.62

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Query:  SGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETT
        S +++T  + R  L     E+S+LCG EVAI V S N KVF FGH + D+LLDR+L  NLS     E YV VAEFN +FA L  E E EKK A  LI+ +
Subjt:  SGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATELEVEKKLATNLIETT

Query:  ENFRKNDRF
        E  R +  F
Subjt:  ENFRKNDRF

SwissProt top hits

e value

%identity

Alignment

Q4PSU4 Agamous-like MADS-box protein AGL61

3.0e-05

34.38

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Query:  DSGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLI-ENLSMSTSGERYVFVA---EFNYNFAHLATELEVEKK
        +S  ++T  + R  L    +E+  LCG E+ I V S   K FSFGH   + +LDR++   N+S++ S +     A   E N    H+ +E+E EKK
Subjt:  DSGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLI-ENLSMSTSGERYVFVA---EFNYNFAHLATELEVEKK

Q9FKK2 Agamous-like MADS-box protein AGL62

1.8e-05

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Query:  DSGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFL--------IENLSMSTSGERYVFVAEFNYNFAHLATELEVEKK
        +S  ++T  + R  L    +E+  LCG EVAI V S   KVFSFGH + D ++DRF+          N        R   V + N +   + ++LE EKK
Subjt:  DSGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFL--------IENLSMSTSGERYVFVAEFNYNFAHLATELEVEKK

Arabidopsis top hits

e value

%identity

Alignment

AT1G65360.1 AGAMOUS-like 23

3.4e-04

32.26

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Query:  AEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRF--LIENLSMSTSGERY--VFVAEFNYNFAHLATELEVEKKLATNLIETTENFRKND
        +E   LC  ++A+ V S   KVFSFGH + D+LLD F   +   + +   E Y  + V   N ++  +  E+E E+K   N     +N R+N+
Subjt:  AEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRF--LIENLSMSTSGERY--VFVAEFNYNFAHLATELEVEKKLATNLIETTENFRKND

AT2G24840.1 AGAMOUS-like 61

2.1e-06

34.38

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Query:  DSGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLI-ENLSMSTSGERYVFVA---EFNYNFAHLATELEVEKK
        +S  ++T  + R  L    +E+  LCG E+ I V S   K FSFGH   + +LDR++   N+S++ S +     A   E N    H+ +E+E EKK
Subjt:  DSGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLI-ENLSMSTSGERYVFVA---EFNYNFAHLATELEVEKK

AT5G60440.1 AGAMOUS-like 62

1.3e-06

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Query:  DSGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFL--------IENLSMSTSGERYVFVAEFNYNFAHLATELEVEKK
        +S  ++T  + R  L    +E+  LCG EVAI V S   KVFSFGH + D ++DRF+          N        R   V + N +   + ++LE EKK
Subjt:  DSGEKLTAIRIRGSL--NGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFL--------IENLSMSTSGERYVFVAEFNYNFAHLATELEVEKK

Sequences

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CDS sequence

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ATGATCGAAGGGATGAGATTGGAGGAATTGAGGGTGTTTCGCTCGGCTTCTATCTATTTGAGAGGCAAAGTGGTGGACAGCGGTGAGAAATTGACTGCGATCAGAATCAG
AGGGTCATTGAATGGTGCCGAGGTCTCTATTTTGTGCGGAGTAGAGGTTGCCATCTTCGTCTTGTCTTCCAACAGTAAGGTGTTTTCCTTCGGTCATTCTGACAACGATC
TGCTTCTGGATCGCTTCCTCATTGAAAATTTATCGATGTCGACGTCGGGTGAGAGATACGTCTTTGTGGCAGAGTTTAACTACAATTTTGCCCATTTAGCGACAGAACTA
GAAGTAGAGAAGAAGCTAGCGACGAATTTGATAGAGACGACAGAGAATTTCAGGAAGAACGACAGATTCTAG

mRNA sequence

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Protein sequence

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MIEGMRLEELRVFRSASIYLRGKVVDSGEKLTAIRIRGSLNGAEVSILCGVEVAIFVLSSNSKVFSFGHSDNDLLLDRFLIENLSMSTSGERYVFVAEFNYNFAHLATEL
EVEKKLATNLIETTENFRKNDRF

Spg018569 (gene) of Sponge gourd (cylindrica) v1 genome