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Spg018584 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018584
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionE3 ubiquitin-protein ligase COP1-like
Genome locationscaffold3:12432380..12436739
RNA-Seq ExpressionSpg018584
SyntenySpg018584
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8695166.1 hypothetical protein F3Y22_tig00110733pilonHSYRG00282 [Hibiscus syriacus]1.5e-0533.67Show/hide
Query:  FVNHFARAKYIDMLKREFLFERWF------NGDLPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLK
        FV+  A+  Y  +  R   FE  F      N +L   +   +T H  + F   P PVN+ +V+EFY+NI E     V+VRG+++ + P AIN  + L+
Subjt:  FVNHFARAKYIDMLKREFLFERWF------NGDLPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLK

PON42276.1 hypothetical protein PanWU01x14_283280 [Parasponia andersonii]1.0e-0634.68Show/hide
Query:  ARAKYIDMLK-REFLFERWFNGD------LPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLKDFSHAG
        A  +Y + ++ R    E+ F GD       P F+   IT H  +LFC+ PE + + +VREFYAN+   +   V VRGV V  +  AIN +Y L D     
Subjt:  ARAKYIDMLK-REFLFERWFNGD------LPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLKDFSHAG

Query:  YNEMAAAPSNEQLNVVVQEVGIEG
        ++E   A +  +L  V++ V I G
Subjt:  YNEMAAAPSNEQLNVVVQEVGIEG

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]4.2e-0545.59Show/hide
Query:  GDLPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLKD
        G LP F+   IT H  + FC+ PE     +VREFYAN+ + E   V VRGV V W+  AIN ++ L D
Subjt:  GDLPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLKD

PON65868.1 hypothetical protein PanWU01x14_113570 [Parasponia andersonii]3.8e-0633.85Show/hide
Query:  RFVNHFARAKYIDMLK-REFLFERWFNGD------LPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLK
        +F +  A  +Y + ++ R    E+ F GD       P F+   IT H  +LFC+ PE     +VREFYAN+   +   V VRGV V  +  AIN +Y L 
Subjt:  RFVNHFARAKYIDMLK-REFLFERWFNGD------LPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLK

Query:  DFSHAGYNEMAAAPSNEQLNVVVQEVGIEG
        D     ++E   A +  +L  V++ V I G
Subjt:  DFSHAGYNEMAAAPSNEQLNVVVQEVGIEG

PON90635.1 hypothetical protein TorRG33x02_134920 [Trema orientale]4.2e-0531.06Show/hide
Query:  RFVNHFARAKYIDMLKREFLFER----WFNGD---LPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLK
        +F +  A A+Y + +K + L       W N +    P F+   I  H  +LFC+  E     +VREFYAN+ + E   V V+GV V W+  AIN L+ L 
Subjt:  RFVNHFARAKYIDMLKREFLFER----WFNGD---LPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLK

Query:  D--FSHAGYNEMAAAPSNEQLNVVVQEVGIEG
        D    H+ + E     +  +L +V++ +   G
Subjt:  D--FSHAGYNEMAAAPSNEQLNVVVQEVGIEG

TrEMBL top hitse value%identityAlignment
A0A2P5B0K0 Uncharacterized protein4.9e-0734.68Show/hide
Query:  ARAKYIDMLK-REFLFERWFNGD------LPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLKDFSHAG
        A  +Y + ++ R    E+ F GD       P F+   IT H  +LFC+ PE + + +VREFYAN+   +   V VRGV V  +  AIN +Y L D     
Subjt:  ARAKYIDMLK-REFLFERWFNGD------LPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLKDFSHAG

Query:  YNEMAAAPSNEQLNVVVQEVGIEG
        ++E   A +  +L  V++ V I G
Subjt:  YNEMAAAPSNEQLNVVVQEVGIEG

A0A2P5BCG4 Uncharacterized protein (Fragment)2.1e-0545.59Show/hide
Query:  GDLPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLKD
        G LP F+   IT H  + FC+ PE     +VREFYAN+ + E   V VRGV V W+  AIN ++ L D
Subjt:  GDLPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLKD

A0A2P5CXV1 Uncharacterized protein1.9e-0633.85Show/hide
Query:  RFVNHFARAKYIDMLK-REFLFERWFNGD------LPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLK
        +F +  A  +Y + ++ R    E+ F GD       P F+   IT H  +LFC+ PE     +VREFYAN+   +   V VRGV V  +  AIN +Y L 
Subjt:  RFVNHFARAKYIDMLK-REFLFERWFNGD------LPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLK

Query:  DFSHAGYNEMAAAPSNEQLNVVVQEVGIEG
        D     ++E   A +  +L  V++ V I G
Subjt:  DFSHAGYNEMAAAPSNEQLNVVVQEVGIEG

A0A2P5EYL5 Uncharacterized protein2.1e-0531.06Show/hide
Query:  RFVNHFARAKYIDMLKREFLFER----WFNGD---LPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLK
        +F +  A A+Y + +K + L       W N +    P F+   I  H  +LFC+  E     +VREFYAN+ + E   V V+GV V W+  AIN L+ L 
Subjt:  RFVNHFARAKYIDMLKREFLFER----WFNGD---LPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLK

Query:  D--FSHAGYNEMAAAPSNEQLNVVVQEVGIEG
        D    H+ + E     +  +L +V++ +   G
Subjt:  D--FSHAGYNEMAAAPSNEQLNVVVQEVGIEG

A0A6A2ZUE4 Uncharacterized protein7.1e-0633.67Show/hide
Query:  FVNHFARAKYIDMLKREFLFERWF------NGDLPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLK
        FV+  A+  Y  +  R   FE  F      N +L   +   +T H  + F   P PVN+ +V+EFY+NI E     V+VRG+++ + P AIN  + L+
Subjt:  FVNHFARAKYIDMLKREFLFERWF------NGDLPHFLRASITNHCMELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATCGAAAACGCAGCAACCTTCTTGTGCGAACACCACCAATCGGCTACAACGGTATATCTCTAAGACTTCTTGGAGCAGGAGACTTGTGGGAGTCTTTTGGGAGAG
ATCTCTGAGAGAAGGAGAGACAATGGAATGTCTTTCACCCCACCCCAGGGGTCCTATATATAGAACGCCTGCAGAGAGGGAAGCCAAGCGGCTTAAAAGACTTCAAGAAG
CTGAGGTTTCTGAAGTATTACAGAAGGTCATCGAGGACATGGCTGAAGAAATAGTCGCTGAGGAAAAGCCGAAAGATTCTGAAAAAGAAAAAGATTTTGAGAAGATTGAC
GGAACAGAGCAAGAGAGTCAAGAAAAGGAAGCTACAGATTTGGGCAAGAATCGAAGTTGGAAACCTTTGGGAGTGTGCAATCCGCAAACAAGCGTCGAGACCCTAGCTCT
TGGGCGTCTCGACGCTGGACTTTCCTCATTTAAATCAGGAGCAGATGCTGAAACGGAAGTGGCATGGCCAGAGGAAAGGAGGTTGCCATATGAGCGCTTTGTCAATCATT
TTGCTAGGGCAAAATATATTGACATGTTGAAGAGAGAATTCCTGTTCGAGAGATGGTTCAATGGTGATCTTCCACACTTTTTGAGGGCTAGCATCACAAACCATTGCATG
GAGTTATTCTGTTCCAAGCCAGAGCCTGTGAATTCGCAAGTGGTGCGAGAGTTCTATGCGAACATTGACGAGGAAGAGGGTTTTCAAGTGATTGTTCGTGGAGTGGCTGT
CGATTGGAATCCTGGAGCCATCAATTTACTGTACAACCTTAAAGATTTCTCTCATGCTGGTTATAATGAGATGGCAGCAGCGCCATCTAACGAGCAATTAAACGTTGTTG
TTCAAGAAGTAGGAATAGAAGGGCATAATAGAGGCTGCTTCCAACGACTCATGACTCCATGGTTTCTCGGGAAAGAGTTCTTCTGGCTTTGCAATATTCCGGTCTCTCAG
CATCGATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGATCGAAAACGCAGCAACCTTCTTGTGCGAACACCACCAATCGGCTACAACGGTATATCTCTAAGACTTCTTGGAGCAGGAGACTTGTGGGAGTCTTTTGGGAGAG
ATCTCTGAGAGAAGGAGAGACAATGGAATGTCTTTCACCCCACCCCAGGGGTCCTATATATAGAACGCCTGCAGAGAGGGAAGCCAAGCGGCTTAAAAGACTTCAAGAAG
CTGAGGTTTCTGAAGTATTACAGAAGGTCATCGAGGACATGGCTGAAGAAATAGTCGCTGAGGAAAAGCCGAAAGATTCTGAAAAAGAAAAAGATTTTGAGAAGATTGAC
GGAACAGAGCAAGAGAGTCAAGAAAAGGAAGCTACAGATTTGGGCAAGAATCGAAGTTGGAAACCTTTGGGAGTGTGCAATCCGCAAACAAGCGTCGAGACCCTAGCTCT
TGGGCGTCTCGACGCTGGACTTTCCTCATTTAAATCAGGAGCAGATGCTGAAACGGAAGTGGCATGGCCAGAGGAAAGGAGGTTGCCATATGAGCGCTTTGTCAATCATT
TTGCTAGGGCAAAATATATTGACATGTTGAAGAGAGAATTCCTGTTCGAGAGATGGTTCAATGGTGATCTTCCACACTTTTTGAGGGCTAGCATCACAAACCATTGCATG
GAGTTATTCTGTTCCAAGCCAGAGCCTGTGAATTCGCAAGTGGTGCGAGAGTTCTATGCGAACATTGACGAGGAAGAGGGTTTTCAAGTGATTGTTCGTGGAGTGGCTGT
CGATTGGAATCCTGGAGCCATCAATTTACTGTACAACCTTAAAGATTTCTCTCATGCTGGTTATAATGAGATGGCAGCAGCGCCATCTAACGAGCAATTAAACGTTGTTG
TTCAAGAAGTAGGAATAGAAGGGCATAATAGAGGCTGCTTCCAACGACTCATGACTCCATGGTTTCTCGGGAAAGAGTTCTTCTGGCTTTGCAATATTCCGGTCTCTCAG
CATCGATAG
Protein sequenceShow/hide protein sequence
MRSKTQQPSCANTTNRLQRYISKTSWSRRLVGVFWERSLREGETMECLSPHPRGPIYRTPAEREAKRLKRLQEAEVSEVLQKVIEDMAEEIVAEEKPKDSEKEKDFEKID
GTEQESQEKEATDLGKNRSWKPLGVCNPQTSVETLALGRLDAGLSSFKSGADAETEVAWPEERRLPYERFVNHFARAKYIDMLKREFLFERWFNGDLPHFLRASITNHCM
ELFCSKPEPVNSQVVREFYANIDEEEGFQVIVRGVAVDWNPGAINLLYNLKDFSHAGYNEMAAAPSNEQLNVVVQEVGIEGHNRGCFQRLMTPWFLGKEFFWLCNIPVSQ
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