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Spg018588 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018588
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationscaffold3:4679250..4682260
RNA-Seq ExpressionSpg018588
SyntenySpg018588
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]6.6e-0776.32Show/hide
Query:  GESGQYADSISLPFWGQDRMGSWEHNRTRWNSLLPDFR
        GESGQ  DSI L F GQDR+GSWEHN TRWN LLP FR
Subjt:  GESGQYADSISLPFWGQDRMGSWEHNRTRWNSLLPDFR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]9.2e-0962.5Show/hide
Query:  ESGQYADSISLPFWGQDRMGSWEHNRTRWNSLLPDFREADESGVTDTR
        ESGQ ADS+ L FWGQDR+ SWEHN TRWNSLLP FRE  +  + + +
Subjt:  ESGQYADSISLPFWGQDRMGSWEHNRTRWNSLLPDFREADESGVTDTR
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-0874.36Show/hide
Query:  GESGQYADSISLPFWGQDRMGSWEHNRTRWNSLLPDFRE
        GESGQ  DSI L FWGQDR+GSWEHN TRWNS +P FR+
Subjt:  GESGQYADSISLPFWGQDRMGSWEHNRTRWNSLLPDFRE
TrEMBL top hitse value%identityAlignment
A0A5A7SJB7 Ty3-gypsy retrotransposon protein5.6e-0468.97Show/hide
Query:  ISLPFWGQDRMGSWEHNRTRWNSLLPDFR
        + L  WGQD++GSWEHN  RWNSL+PDFR
Subjt:  ISLPFWGQDRMGSWEHNRTRWNSLLPDFR
A0A5A7SPG1 Pol protein3.2e-0776.32Show/hide
Query:  GESGQYADSISLPFWGQDRMGSWEHNRTRWNSLLPDFR
        GESGQ  DSI L F GQDR+GSWEHN TRWN LLP FR
Subjt:  GESGQYADSISLPFWGQDRMGSWEHNRTRWNSLLPDFR
A0A5A7U2P4 Integrase catalytic domain-containing protein4.4e-0962.5Show/hide
Query:  ESGQYADSISLPFWGQDRMGSWEHNRTRWNSLLPDFREADESGVTDTR
        ESGQ ADS+ L FWGQDR+ SWEHN TRWNSLLP FRE  +  + + +
Subjt:  ESGQYADSISLPFWGQDRMGSWEHNRTRWNSLLPDFREADESGVTDTR
A0A5D3C3J6 Gag/pol protein9.9e-0974.36Show/hide
Query:  GESGQYADSISLPFWGQDRMGSWEHNRTRWNSLLPDFRE
        GESGQ  DSI L FWGQDR+GSWEHN TRWNS +P FR+
Subjt:  GESGQYADSISLPFWGQDRMGSWEHNRTRWNSLLPDFRE
A0A5D3E3M6 Uncharacterized protein5.6e-0468.97Show/hide
Query:  ISLPFWGQDRMGSWEHNRTRWNSLLPDFR
        + L  WGQD++GSWEHN  RWNSL+PDFR
Subjt:  ISLPFWGQDRMGSWEHNRTRWNSLLPDFR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGA
CTTTAGGGAAGCAGATGAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATGTCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTAC
AACTGTCCATTAGGTCTCACTGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGGATACGACCCGCTTTGTATTATGATACAAACGCAATGATCCAACGCGTTCGT
GTAGGAGACATGCGAGTGGGGGTATCCTGTGCAATGAGTTTGCATAATACCAGACCGCAAAATAGTGAGAGTGGCTTGCACTCCGACTCAATTAGCCTACCATTTTGGGG
ACAAGACCGAGTGGGGAGCTTGGAACATAATCACACAAGATGGAATTCACTCCTTCCCGCTATTAGGGACGTTTCTGGGCTTATTTGGAGTTCCCGAGATGACATGGAAC
TAAAGGAAGTGACCGGAGCGTTCGAGTCTCAAGATCGGAGCCAGAAGGACCAAAAGAGCGTTCAAAATGTGTATTCTCGAGAGTTGACGTCGAGACCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGA
CTTTAGGGAAGCAGATGAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATGTCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTAC
AACTGTCCATTAGGTCTCACTGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGGATACGACCCGCTTTGTATTATGATACAAACGCAATGATCCAACGCGTTCGT
GTAGGAGACATGCGAGTGGGGGTATCCTGTGCAATGAGTTTGCATAATACCAGACCGCAAAATAGTGAGAGTGGCTTGCACTCCGACTCAATTAGCCTACCATTTTGGGG
ACAAGACCGAGTGGGGAGCTTGGAACATAATCACACAAGATGGAATTCACTCCTTCCCGCTATTAGGGACGTTTCTGGGCTTATTTGGAGTTCCCGAGATGACATGGAAC
TAAAGGAAGTGACCGGAGCGTTCGAGTCTCAAGATCGGAGCCAGAAGGACCAAAAGAGCGTTCAAAATGTGTATTCTCGAGAGTTGACGTCGAGACCCTAG
Protein sequenceShow/hide protein sequence
MGESGQYADSISLPFWGQDRMGSWEHNRTRWNSLLPDFREADESGVTDTREGLTSRYWSMSVDTENMSAVRRVQLSIRSHWDKAGYLILVTLWIRPALYYDTNAMIQRVR
VGDMRVGVSCAMSLHNTRPQNSESGLHSDSISLPFWGQDRVGSLEHNHTRWNSLLPAIRDVSGLIWSSRDDMELKEVTGAFESQDRSQKDQKSVQNVYSRELTSRP