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Spg018589 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018589
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:6302085..6304577
RNA-Seq ExpressionSpg018589
SyntenySpg018589
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006412 - translation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037573.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1562.67Show/hide
Query:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLEKTI
        MSS+  L K   +R VE+EEQ+ YL EVPD+IR++ESRL+EIS KTN +DAV GRV+G PIQELM RV+ LE T+
Subjt:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLEKTI

TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1564Show/hide
Query:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLEKTI
        MSS+   +K   +R VE+EEQ+ YL EVPD+IR++ESRLDEIS KTN +DAV GRV+G PIQELM RV+ LE TI
Subjt:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLEKTI

XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]3.2e-1663.89Show/hide
Query:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLE
        MS+TKQL+K+HV+R VEIEEQL YLREVPD++R +E+R+DE S K  ++DAV  RVDG+PIQ++ MRVE  E
Subjt:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLE

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]8.3e-1761.33Show/hide
Query:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLEKTI
        MS+TKQL K+H++R VEIEE+L +LRE+PD +R+VESRLDEISTK + +D V  R+DG+ I+ELM+RVE LE  +
Subjt:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLEKTI

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]6.4e-0147.83Show/hide
Query:  EGAHWVSDCPKQIALQAFQATFAIDSEVETEAVETETPQVEAENNP
        +G H V +CP + AL+AFQAT   D  +E E  ET+TP  +A++NP
Subjt:  EGAHWVSDCPKQIALQAFQATFAIDSEVETEAVETETPQVEAENNP

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]2.4e-1663.89Show/hide
Query:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLE
        MS+TKQL+K+HV+R VEIEEQL YLREVPD +R +E+R+DE S K  ++DAV  R+DG+PIQ++ MRVE LE
Subjt:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLE

TrEMBL top hitse value%identityAlignment
A0A5A7T3M3 Reverse transcriptase5.8e-1662.67Show/hide
Query:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLEKTI
        MSS+  L K   +R VE+EEQ+ YL EVPD+IR++ESRL+EIS KTN +DAV GRV+G PIQELM RV+ LE T+
Subjt:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLEKTI

A0A5D3BYE6 Reverse transcriptase5.8e-1662.67Show/hide
Query:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLEKTI
        MSS+  L K   +R VE+EEQ+ YL EVPD+IR++ESRL+EIS KTN +DAV GRV+G PIQELM RV+ LE T+
Subjt:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLEKTI

A0A6J1DK29 uncharacterized protein LOC1110218291.5e-1663.89Show/hide
Query:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLE
        MS+TKQL+K+HV+R VEIEEQL YLREVPD++R +E+R+DE S K  ++DAV  RVDG+PIQ++ MRVE  E
Subjt:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLE

A0A6J1DLQ6 uncharacterized protein LOC1110223204.0e-1761.33Show/hide
Query:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLEKTI
        MS+TKQL K+H++R VEIEE+L +LRE+PD +R+VESRLDEISTK + +D V  R+DG+ I+ELM+RVE LE  +
Subjt:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLEKTI

A0A6J1DLQ6 uncharacterized protein LOC1110223203.1e-0147.83Show/hide
Query:  EGAHWVSDCPKQIALQAFQATFAIDSEVETEAVETETPQVEAENNP
        +G H V +CP + AL+AFQAT   D  +E E  ET+TP  +A++NP
Subjt:  EGAHWVSDCPKQIALQAFQATFAIDSEVETEAVETETPQVEAENNP

A0A6J1DLQ6 uncharacterized protein LOC1110223201.2e-1663.89Show/hide
Query:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLE
        MS+TKQL+K+HV+R VEIEEQL YLREVPD +R +E+R+DE S K  ++DAV  R+DG+PIQ++ MRVE LE
Subjt:  MSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAGGGAATTGTTCGAGGTGTCTACCTTACTTTTGCTCTTGAGGGACGTCCGTGTTCATAAGGGGAGAAGGGATCTTCGCACTTGGACCCCTTGTTCATCTCCGAG
TTTCTCCTCTAGCTCTTTGTTCCATTTCCTGCGAAAATCCTTTGGCAGACTTGCTTTAGCAGAGGTGGAAGGGGAGTTGTGGAAGGTGATTAGACATAATGCCTCGGTTT
GGACTTTTGTGACTAAGGATTTTTGTAAATATCAGATAGGTTTCATCCTTTTGGATTGTGAGTCCTTTTTTTTGGTATTAGAGCCTAGTTGGCTCCTGAAGTTGAAAGCT
GAAAATATGTCGTCAACCAAGCAGTTGGCAAAGACCCACGTGGAACGTTTCGTAGAGATCGAAGAGCAATTGTTCTACTTGAGGGAAGTCCCTGACGCTATTCGGTTTGT
GGAATCTCGACTGGATGAGATTTCGACCAAAACCAACAAAGTTGATGCAGTACCTGGCCGCGTGGATGGAATGCCCATCCAAGAATTGATGATGAGGGTCGAGAACCTTG
AAAAAACAATCGTCCAGGCTCTCCCAAAAGTGGAGGAGGAGACAGACAAGGAGGGGGAGACCGTAGACCCTTCTAGTAGAGAGGGTGCCCATTGGGTGTCTGATTGCCCA
AAGCAGATAGCCCTCCAAGCTTTTCAAGCCACATTTGCCATCGATTCTGAAGTTGAAACGGAAGCCGTGGAAACCGAGACACCGCAAGTTGAAGCTGAGAACAACCCTTG
A
mRNA sequenceShow/hide mRNA sequence
ATGAATAGGGAATTGTTCGAGGTGTCTACCTTACTTTTGCTCTTGAGGGACGTCCGTGTTCATAAGGGGAGAAGGGATCTTCGCACTTGGACCCCTTGTTCATCTCCGAG
TTTCTCCTCTAGCTCTTTGTTCCATTTCCTGCGAAAATCCTTTGGCAGACTTGCTTTAGCAGAGGTGGAAGGGGAGTTGTGGAAGGTGATTAGACATAATGCCTCGGTTT
GGACTTTTGTGACTAAGGATTTTTGTAAATATCAGATAGGTTTCATCCTTTTGGATTGTGAGTCCTTTTTTTTGGTATTAGAGCCTAGTTGGCTCCTGAAGTTGAAAGCT
GAAAATATGTCGTCAACCAAGCAGTTGGCAAAGACCCACGTGGAACGTTTCGTAGAGATCGAAGAGCAATTGTTCTACTTGAGGGAAGTCCCTGACGCTATTCGGTTTGT
GGAATCTCGACTGGATGAGATTTCGACCAAAACCAACAAAGTTGATGCAGTACCTGGCCGCGTGGATGGAATGCCCATCCAAGAATTGATGATGAGGGTCGAGAACCTTG
AAAAAACAATCGTCCAGGCTCTCCCAAAAGTGGAGGAGGAGACAGACAAGGAGGGGGAGACCGTAGACCCTTCTAGTAGAGAGGGTGCCCATTGGGTGTCTGATTGCCCA
AAGCAGATAGCCCTCCAAGCTTTTCAAGCCACATTTGCCATCGATTCTGAAGTTGAAACGGAAGCCGTGGAAACCGAGACACCGCAAGTTGAAGCTGAGAACAACCCTTG
A
Protein sequenceShow/hide protein sequence
MNRELFEVSTLLLLLRDVRVHKGRRDLRTWTPCSSPSFSSSSLFHFLRKSFGRLALAEVEGELWKVIRHNASVWTFVTKDFCKYQIGFILLDCESFFLVLEPSWLLKLKA
ENMSSTKQLAKTHVERFVEIEEQLFYLREVPDAIRFVESRLDEISTKTNKVDAVPGRVDGMPIQELMMRVENLEKTIVQALPKVEEETDKEGETVDPSSREGAHWVSDCP
KQIALQAFQATFAIDSEVETEAVETETPQVEAENNP