; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018616 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018616
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:13659034..13666290
RNA-Seq ExpressionSpg018616
SyntenySpg018616
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]9.0e-0439.58Show/hide
Query:  ICMGESGQFVDSISLPFQGQDRMGAGNITVQDGIHSFPYWEIFYSEKSAADPWGGVKGIPFILLLSENSPKGSHKSPASRSLRVIPVNSQQDGSRV
        IC GESGQ  DSI L F GQDR+G      QDGIHSFP   +F            ++G   ++L +   P   H+S    S   I VN + + SRV
Subjt:  ICMGESGQFVDSISLPFQGQDRMGAGNITVQDGIHSFPYWEIFYSEKSAADPWGGVKGIPFILLLSENSPKGSHKSPASRSLRVIPVNSQQDGSRV
TrEMBL top hitse value%identityAlignment
A0A5A7U202 Reverse transcriptase4.3e-0439.58Show/hide
Query:  ICMGESGQFVDSISLPFQGQDRMGAGNITVQDGIHSFPYWEIFYSEKSAADPWGGVKGIPFILLLSENSPKGSHKSPASRSLRVIPVNSQQDGSRV
        IC GESGQ  DSI L F GQDR+G      QDGIHSFP   +F            ++G   ++L +   P   H+S    S   I VN + + SRV
Subjt:  ICMGESGQFVDSISLPFQGQDRMGAGNITVQDGIHSFPYWEIFYSEKSAADPWGGVKGIPFILLLSENSPKGSHKSPASRSLRVIPVNSQQDGSRV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAATATGCGACCAATATGCACCCACAACCTTATAAGGAAAGTAGCCTCAGCTGAAGACAGAATTGTCAAGGCAGTGCACATAAGAGATTTTGCGCCCGATATGCG
GCCACAACTGGACTTTCTGACAGAATACCGAGATTCGCGGGATCTTCACAGAATCATCCGAAAATCCCAAATCTCATATCAAATCTCCAAGGATTCACACCGGGTGCGGA
ATGTTCGGGATGGATTCGGTCGTGGTCACTGCGGTTGGTGCTCAGTGTCGATTACTTGGCTAACAGGTGTCGAGATCGTCTCTGGTGCTCGGGGTTCGGCACATAAGAAG
CTCAATTTGATCAAACATTGCATGTTGTTCATATGGAGAAAACACAGAGACAGTTTACCAACCTTGCTTAAATGGAGAAATTGGTTGGACTTCCTTCTTGTTTCTCTTCA
CCAATTGATCACGAACCACCACTGGATCTTCATTGCTATCCTCAAGCCTTTGGAACAAATTGTGGGATCCTCAAGTGATGGAATTTATGGAGAAAAGTTTGAAGAACAAG
CATATGAAGGTGGGTATGGTGAGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGGCCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCAT
ATTTGTATGGGTGAGAGTGGCCAGTTCGTCGACTCAATAAGCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTT
CCCCTATTGGGAAATATTCTATAGTGAGAAGAGTGCAGCTGACCCCTGGGGTGGGGTGAAAGGTATCCCATTCATTCTCCTACTCTCAGAGAATTCTCCCAAAGGCTCCC
ACAAGTCTCCTGCCTCTAGAAGTCTCAGAGTCATACCGGTAAATTCGCAACAGGACGGTTCAAGGGTGTTGGGCGGTCCGATTCACGCGGTCTGGCTGGGCTGGGACCAA
TTTGTTCCGGTTCAGCTGGAATTTAGCTCGGTTCGTGATTTTCGTAGCTGGTTCGAAGTGGTTCGGGTTGGTTCGGACGGTCTAGACCAGTATTTGGAGCTGCAGAAGGA
CTTTAAGGATAGAATATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGAATATGCGACCAATATGCACCCACAACCTTATAAGGAAAGTAGCCTCAGCTGAAGACAGAATTGTCAAGGCAGTGCACATAAGAGATTTTGCGCCCGATATGCG
GCCACAACTGGACTTTCTGACAGAATACCGAGATTCGCGGGATCTTCACAGAATCATCCGAAAATCCCAAATCTCATATCAAATCTCCAAGGATTCACACCGGGTGCGGA
ATGTTCGGGATGGATTCGGTCGTGGTCACTGCGGTTGGTGCTCAGTGTCGATTACTTGGCTAACAGGTGTCGAGATCGTCTCTGGTGCTCGGGGTTCGGCACATAAGAAG
CTCAATTTGATCAAACATTGCATGTTGTTCATATGGAGAAAACACAGAGACAGTTTACCAACCTTGCTTAAATGGAGAAATTGGTTGGACTTCCTTCTTGTTTCTCTTCA
CCAATTGATCACGAACCACCACTGGATCTTCATTGCTATCCTCAAGCCTTTGGAACAAATTGTGGGATCCTCAAGTGATGGAATTTATGGAGAAAAGTTTGAAGAACAAG
CATATGAAGGTGGGTATGGTGAGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGGCCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCAT
ATTTGTATGGGTGAGAGTGGCCAGTTCGTCGACTCAATAAGCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTT
CCCCTATTGGGAAATATTCTATAGTGAGAAGAGTGCAGCTGACCCCTGGGGTGGGGTGAAAGGTATCCCATTCATTCTCCTACTCTCAGAGAATTCTCCCAAAGGCTCCC
ACAAGTCTCCTGCCTCTAGAAGTCTCAGAGTCATACCGGTAAATTCGCAACAGGACGGTTCAAGGGTGTTGGGCGGTCCGATTCACGCGGTCTGGCTGGGCTGGGACCAA
TTTGTTCCGGTTCAGCTGGAATTTAGCTCGGTTCGTGATTTTCGTAGCTGGTTCGAAGTGGTTCGGGTTGGTTCGGACGGTCTAGACCAGTATTTGGAGCTGCAGAAGGA
CTTTAAGGATAGAATATAG
Protein sequenceShow/hide protein sequence
MWNMRPICTHNLIRKVASAEDRIVKAVHIRDFAPDMRPQLDFLTEYRDSRDLHRIIRKSQISYQISKDSHRVRNVRDGFGRGHCGWCSVSITWLTGVEIVSGARGSAHKK
LNLIKHCMLFIWRKHRDSLPTLLKWRNWLDFLLVSLHQLITNHHWIFIAILKPLEQIVGSSSDGIYGEKFEEQAYEGGYGEDKAGYLILVTLCDTAHLVFDTDAMIQSIH
ICMGESGQFVDSISLPFQGQDRMGAGNITVQDGIHSFPYWEIFYSEKSAADPWGGVKGIPFILLLSENSPKGSHKSPASRSLRVIPVNSQQDGSRVLGGPIHAVWLGWDQ
FVPVQLEFSSVRDFRSWFEVVRVGSDGLDQYLELQKDFKDRI