; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018633 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018633
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold3:10403927..10406493
RNA-Seq ExpressionSpg018633
SyntenySpg018633
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-1558.33Show/hide
Query:  LYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQ---ESQQV-------LLEEDDVCWLHAIFRTELAGGPGGGV
        ++S+  +SVLRDND +VEIELP+PDTLPTSAESS S+SS++L+   ES  V       ++  DDVCWLHA+FR +  GGPGGGV
Subjt:  LYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQ---ESQQV-------LLEEDDVCWLHAIFRTELAGGPGGGV

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.2e-1564Show/hide
Query:  LYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQESQQVLLEEDDVCWLHAIFRTELAGGPGGGVT
        ++S+  +SVLRDNDA+VEIELPVPDTLPTSAES  S+S S        ++  DDVCWLHA+FR + AGGPGGGVT
Subjt:  LYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQESQQVLLEEDDVCWLHAIFRTELAGGPGGGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-1659.77Show/hide
Query:  TKRLYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQ---ESQQV-------LLEEDDVCWLHAIFRTELAGGPGGGV
        T+ ++ +  +SVLRDNDA+VEIELPVPDTLPTSAESS S+SS+ L+   E   V       ++ EDDVCWLHA+FR + AGGPGGGV
Subjt:  TKRLYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQ---ESQQV-------LLEEDDVCWLHAIFRTELAGGPGGGV

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-1558.33Show/hide
Query:  LYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQ---ESQQV-------LLEEDDVCWLHAIFRTELAGGPGGGV
        ++S+  +SVLRDND +VEIELP+PDTLPTSAESS S+SS++L+   ES  V       ++  DDVCWLHA+FR +  GGPGGGV
Subjt:  LYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQ---ESQQV-------LLEEDDVCWLHAIFRTELAGGPGGGV

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-1659.77Show/hide
Query:  TKRLYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQ---ESQQV-------LLEEDDVCWLHAIFRTELAGGPGGGV
        T+ ++ +  +SVLRDNDA+VEIELPVPDTLPTSAESS S+SS+ L+   E   V       ++ EDDVCWLHA+FR + AGGPGGGV
Subjt:  TKRLYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQ---ESQQV-------LLEEDDVCWLHAIFRTELAGGPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase7.8e-1658.33Show/hide
Query:  LYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQ---ESQQV-------LLEEDDVCWLHAIFRTELAGGPGGGV
        ++S+  +SVLRDND +VEIELP+PDTLPTSAESS S+SS++L+   ES  V       ++  DDVCWLHA+FR +  GGPGGGV
Subjt:  LYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQ---ESQQV-------LLEEDDVCWLHAIFRTELAGGPGGGV

A0A5A7VMG9 Reverse transcriptase1.2e-1659.77Show/hide
Query:  TKRLYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQ---ESQQV-------LLEEDDVCWLHAIFRTELAGGPGGGV
        T+ ++ +  +SVLRDNDA+VEIELPVPDTLPTSAESS S+SS+ L+   E   V       ++ EDDVCWLHA+FR + AGGPGGGV
Subjt:  TKRLYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQ---ESQQV-------LLEEDDVCWLHAIFRTELAGGPGGGV

A0A5D3BAD1 Retrotrans_gag domain-containing protein6.0e-1664Show/hide
Query:  LYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQESQQVLLEEDDVCWLHAIFRTELAGGPGGGVT
        ++S+  +SVLRDNDA+VEIELPVPDTLPTSAES  S+S S        ++  DDVCWLHA+FR + AGGPGGGVT
Subjt:  LYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQESQQVLLEEDDVCWLHAIFRTELAGGPGGGVT

A0A5D3D150 Reverse transcriptase7.8e-1658.33Show/hide
Query:  LYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQ---ESQQV-------LLEEDDVCWLHAIFRTELAGGPGGGV
        ++S+  +SVLRDND +VEIELP+PDTLPTSAESS S+SS++L+   ES  V       ++  DDVCWLHA+FR +  GGPGGGV
Subjt:  LYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQ---ESQQV-------LLEEDDVCWLHAIFRTELAGGPGGGV

A0A5D3DX39 Reverse transcriptase1.2e-1659.77Show/hide
Query:  TKRLYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQ---ESQQV-------LLEEDDVCWLHAIFRTELAGGPGGGV
        T+ ++ +  +SVLRDNDA+VEIELPVPDTLPTSAESS S+SS+ L+   E   V       ++ EDDVCWLHA+FR + AGGPGGGV
Subjt:  TKRLYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQ---ESQQV-------LLEEDDVCWLHAIFRTELAGGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTACCGAATGGAAAAGCTAATGTTGGGAATGACCCTAAGGGACCCTATCCATTTCTGGAGATTACTTTTAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGA
ATCTGAGTTCAACCTGTCAACCTCTGGTTTTTTATTCAATTTGAGCTACACAGAAGGAACTAAGAGGTTATATTCCGTTGTTGACGTGAGTGTACTCCGCGACAACGATG
CTATCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACATCTGCTGAAAGTTCCAGTTCAAGCTCCAGTTCAATGTTACAGGAGAGTCAACAGGTATTGTTAGAG
GAGGACGATGTTTGTTGGCTTCACGCCATCTTCCGGACTGAGTTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTTGTTTCGATTCCTATGTTACAACCCTCCGAATGG
TTTAGTACCTCCAGGGCATACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTACCGAATGGAAAAGCTAATGTTGGGAATGACCCTAAGGGACCCTATCCATTTCTGGAGATTACTTTTAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGA
ATCTGAGTTCAACCTGTCAACCTCTGGTTTTTTATTCAATTTGAGCTACACAGAAGGAACTAAGAGGTTATATTCCGTTGTTGACGTGAGTGTACTCCGCGACAACGATG
CTATCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACATCTGCTGAAAGTTCCAGTTCAAGCTCCAGTTCAATGTTACAGGAGAGTCAACAGGTATTGTTAGAG
GAGGACGATGTTTGTTGGCTTCACGCCATCTTCCGGACTGAGTTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTTGTTTCGATTCCTATGTTACAACCCTCCGAATGG
TTTAGTACCTCCAGGGCATACTTAG
Protein sequenceShow/hide protein sequence
MLPNGKANVGNDPKGPYPFLEITFKIGKAHAKPAIAESEFNLSTSGFLFNLSYTEGTKRLYSVVDVSVLRDNDAIVEIELPVPDTLPTSAESSSSSSSSMLQESQQVLLE
EDDVCWLHAIFRTELAGGPGGGVTTLFRFLCYNPPNGLVPPGHT