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Spg018635 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018635
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:10349756..10352392
RNA-Seq ExpressionSpg018635
SyntenySpg018635
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]3.2e-2052.73Show/hide
Query:  PRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLEGRPGGGV
        PRGNR +L T +L KTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+  + +             EG    +  DD+ WLHA+F AK  G PGGGV
Subjt:  PRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLEGRPGGGV

Query:  TVGDFERLRK
              R R+
Subjt:  TVGDFERLRK

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]3.2e-2052.94Show/hide
Query:  PRGNRSSLQTRELAKT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR
        PRGNR SLQTREL KT               V IELPVPD LPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV 
Subjt:  PRGNRSSLQTRELAKT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLEGRPGGGVT
        WLHA+FRAK  G PGGGVT
Subjt:  WLHAIFRAKLEGRPGGGVT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]7.8e-1950.83Show/hide
Query:  RGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDV
        RGNRSSLQ+ EL  T                 VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV
Subjt:  RGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDV

Query:  RWLHAIFRAKLEGRPGGGVT
         WLHA+FRAK  G PGGGVT
Subjt:  RWLHAIFRAKLEGRPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]3.2e-2052.89Show/hide
Query:  LRPRGNRSSLQTRELAKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDD
        L PRGNR SLQT EL KTV                IELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DD
Subjt:  LRPRGNRSSLQTRELAKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDD

Query:  VRWLHAIFRAKLEGRPGGGVT
        V WLHA+FRAK  G PGGGVT
Subjt:  VRWLHAIFRAKLEGRPGGGVT

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]7.8e-1950.83Show/hide
Query:  RGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDV
        RGNRSSLQ+ EL  T                 VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV
Subjt:  RGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDV

Query:  RWLHAIFRAKLEGRPGGGVT
         WLHA+FRAK  G PGGGVT
Subjt:  RWLHAIFRAKLEGRPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein1.5e-2052.73Show/hide
Query:  PRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLEGRPGGGV
        PRGNR +L T +L KTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+  + +             EG    +  DD+ WLHA+F AK  G PGGGV
Subjt:  PRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLEGRPGGGV

Query:  TVGDFERLRK
              R R+
Subjt:  TVGDFERLRK

A0A5A7UT17 CCHC-type domain-containing protein1.5e-2052.94Show/hide
Query:  PRGNRSSLQTRELAKT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR
        PRGNR SLQTREL KT               V IELPVPD LPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV 
Subjt:  PRGNRSSLQTRELAKT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLEGRPGGGVT
        WLHA+FRAK  G PGGGVT
Subjt:  WLHAIFRAKLEGRPGGGVT

A0A5A7V9N3 Reverse transcriptase3.8e-1950.83Show/hide
Query:  RGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDV
        RGNRSSLQ+ EL  T                 VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV
Subjt:  RGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDV

Query:  RWLHAIFRAKLEGRPGGGVT
         WLHA+FRAK  G PGGGVT
Subjt:  RWLHAIFRAKLEGRPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein1.5e-2052.89Show/hide
Query:  LRPRGNRSSLQTRELAKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDD
        L PRGNR SLQT EL KTV                IELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DD
Subjt:  LRPRGNRSSLQTRELAKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDD

Query:  VRWLHAIFRAKLEGRPGGGVT
        V WLHA+FRAK  G PGGGVT
Subjt:  VRWLHAIFRAKLEGRPGGGVT

A0A5D3DSY7 Putative Retrotransposon protein3.8e-1950.83Show/hide
Query:  RGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDV
        RGNRSSLQ+ EL  T                 VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV
Subjt:  RGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDV

Query:  RWLHAIFRAKLEGRPGGGVT
         WLHA+FRAK  G PGGGVT
Subjt:  RWLHAIFRAKLEGRPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGACTTCGAACTTCGGATGATCAGCTTCAACCCTCGGAGGCCAGGTGAGCTTGACTCAGATGAAGTGTATGAGCTCAAGCCAGATGAGTTGAGGCCAAGAGGAAA
TAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGAACAAGCTCCAGTACGT
GGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAAGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCATGCAATC
TTTCGGGCTAAGCTAGAAGGTCGTCCGGGAGGGGGTGTGACAGTTGGGGACTTCGAGAGGTTGAGGAAATACGTCAACCCTCTACAAGAATTAGTTTCATCCCAACCGTG
CATACACTTCGTTGAGGACTTGGGTAGGTTGAGGAAATACGCCAACCCCTCTGCAAGAATTAATTTCATCCCAATCGTG
mRNA sequenceShow/hide mRNA sequence
ATGGTCGACTTCGAACTTCGGATGATCAGCTTCAACCCTCGGAGGCCAGGTGAGCTTGACTCAGATGAAGTGTATGAGCTCAAGCCAGATGAGTTGAGGCCAAGAGGAAA
TAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGAACAAGCTCCAGTACGT
GGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAAGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCATGCAATC
TTTCGGGCTAAGCTAGAAGGTCGTCCGGGAGGGGGTGTGACAGTTGGGGACTTCGAGAGGTTGAGGAAATACGTCAACCCTCTACAAGAATTAGTTTCATCCCAACCGTG
CATACACTTCGTTGAGGACTTGGGTAGGTTGAGGAAATACGCCAACCCCTCTGCAAGAATTAATTTCATCCCAATCGTG
Protein sequenceShow/hide protein sequence
MVDFELRMISFNPRRPGELDSDEVYELKPDELRPRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAI
FRAKLEGRPGGGVTVGDFERLRKYVNPLQELVSSQPCIHFVEDLGRLRKYANPSARINFIPIV