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Spg018661 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018661
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold3:20650225..20652362
RNA-Seq ExpressionSpg018661
SyntenySpg018661
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]1.1e-0869.09Show/hide
Query:  LFGLSYTRRTKRPIGNRPSLWTRKLAKTVEIELPVPDTLPTSAESSSSSSSSAIQ
        LF LSY   TKRP GNRPSL T KL KTVEIELP+PDTLPT AES  S+SS+ ++
Subjt:  LFGLSYTRRTKRPIGNRPSLWTRKLAKTVEIELPVPDTLPTSAESSSSSSSSAIQ

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.5e-0737.69Show/hide
Query:  LFGLSYTRRTKRPIGNRPSLWTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSS-----------------------------AI
        LFGL Y   TKRP GNR SL T +L KT                 VEIELPVPDTLPTSAESS S+SS+                              +
Subjt:  LFGLSYTRRTKRPIGNRPSLWTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSS-----------------------------AI

Query:  QQGQQVSLEEDDVCWLHAISLTKLTDRTSG
          G    +  D+VCWLHA+   K      G
Subjt:  QQGQQVSLEEDDVCWLHAISLTKLTDRTSG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.8e-0936.55Show/hide
Query:  MAESGFNLPISGFLFGLSYTRRTK----------------------RPIGNRPSLWTRKLAKTVEIELPVPDTLPTSAESSSSSSSSAIQ----------
        +AESG N      LFGLSY    +                       P GNRP+L T KL KTVEIELPVPDTLPTSAESS S+SS+ ++          
Subjt:  MAESGFNLPISGFLFGLSYTRRTK----------------------RPIGNRPSLWTRKLAKTVEIELPVPDTLPTSAESSSSSSSSAIQ----------

Query:  ----------------QGQQVSLEEDDVCWLHAISLTKLTDRTSG
                        +G    +  DD+CWLHA+   K      G
Subjt:  ----------------QGQQVSLEEDDVCWLHAISLTKLTDRTSG

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]3.5e-0749.45Show/hide
Query:  RPIGNRPSLWTRKLAKT-----------------VEIELPVPDTLPTSAES-SSSSSSSAIQQGQQVSLEEDDVCWLHAISLTKLTDRTSG
        RP GNRPSL T KL KT                 VEIELPVPDTLPTSAES  S+S S+ I +G       DDVCWLHA+   K      G
Subjt:  RPIGNRPSLWTRKLAKT-----------------VEIELPVPDTLPTSAES-SSSSSSSAIQQGQQVSLEEDDVCWLHAISLTKLTDRTSG

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]4.5e-0748.04Show/hide
Query:  PIGNRPSLWTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSA-IQQGQQVSLEEDDVCWLHAISLTKLTDRTSGVRPKYCQEWV
        P GNR SL T KL KT                 VEIELPVPDT PTSAESS S+SSSA I +G       DDVCWLHA+   K+   T    P  C   V
Subjt:  PIGNRPSLWTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSA-IQQGQQVSLEEDDVCWLHAISLTKLTDRTSGVRPKYCQEWV

Query:  QS
        +S
Subjt:  QS

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein5.2e-0969.09Show/hide
Query:  LFGLSYTRRTKRPIGNRPSLWTRKLAKTVEIELPVPDTLPTSAESSSSSSSSAIQ
        LF LSY   TKRP GNRPSL T KL KTVEIELP+PDTLPT AES  S+SS+ ++
Subjt:  LFGLSYTRRTKRPIGNRPSLWTRKLAKTVEIELPVPDTLPTSAESSSSSSSSAIQ

A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.7e-0737.69Show/hide
Query:  LFGLSYTRRTKRPIGNRPSLWTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSS-----------------------------AI
        LFGL Y   TKRP GNR SL T +L KT                 VEIELPVPDTLPTSAESS S+SS+                              +
Subjt:  LFGLSYTRRTKRPIGNRPSLWTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSS-----------------------------AI

Query:  QQGQQVSLEEDDVCWLHAISLTKLTDRTSG
          G    +  D+VCWLHA+   K      G
Subjt:  QQGQQVSLEEDDVCWLHAISLTKLTDRTSG

A0A5A7UAH6 CCHC-type domain-containing protein1.4e-0936.55Show/hide
Query:  MAESGFNLPISGFLFGLSYTRRTK----------------------RPIGNRPSLWTRKLAKTVEIELPVPDTLPTSAESSSSSSSSAIQ----------
        +AESG N      LFGLSY    +                       P GNRP+L T KL KTVEIELPVPDTLPTSAESS S+SS+ ++          
Subjt:  MAESGFNLPISGFLFGLSYTRRTK----------------------RPIGNRPSLWTRKLAKTVEIELPVPDTLPTSAESSSSSSSSAIQ----------

Query:  ----------------QGQQVSLEEDDVCWLHAISLTKLTDRTSG
                        +G    +  DD+CWLHA+   K      G
Subjt:  ----------------QGQQVSLEEDDVCWLHAISLTKLTDRTSG

A0A5D3BAD1 Retrotrans_gag domain-containing protein1.7e-0749.45Show/hide
Query:  RPIGNRPSLWTRKLAKT-----------------VEIELPVPDTLPTSAES-SSSSSSSAIQQGQQVSLEEDDVCWLHAISLTKLTDRTSG
        RP GNRPSL T KL KT                 VEIELPVPDTLPTSAES  S+S S+ I +G       DDVCWLHA+   K      G
Subjt:  RPIGNRPSLWTRKLAKT-----------------VEIELPVPDTLPTSAES-SSSSSSSAIQQGQQVSLEEDDVCWLHAISLTKLTDRTSG

A0A5D3BQ75 Uncharacterized protein2.2e-0748.04Show/hide
Query:  PIGNRPSLWTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSA-IQQGQQVSLEEDDVCWLHAISLTKLTDRTSGVRPKYCQEWV
        P GNR SL T KL KT                 VEIELPVPDT PTSAESS S+SSSA I +G       DDVCWLHA+   K+   T    P  C   V
Subjt:  PIGNRPSLWTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSA-IQQGQQVSLEEDDVCWLHAISLTKLTDRTSGVRPKYCQEWV

Query:  QS
        +S
Subjt:  QS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAATCGGGGTTCAACCTGCCTATCTCTGGTTTTTTATTCGGTTTGAGCTACACAAGAAGAACTAAGAGGCCAATAGGAAATAGGCCGAGTCTATGGACCAGGAA
ACTAGCCAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTTCAGCGATTCAGCAAGGTCAACAGGTAT
CGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAACAGATAGAACTAGCGGAGTACGGCCCAAGTATTGTCAAGAGTGGGTCCAGTCAGGA
CTAGAATGTGGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAATCGGGGTTCAACCTGCCTATCTCTGGTTTTTTATTCGGTTTGAGCTACACAAGAAGAACTAAGAGGCCAATAGGAAATAGGCCGAGTCTATGGACCAGGAA
ACTAGCCAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTTCAGCGATTCAGCAAGGTCAACAGGTAT
CGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAACAGATAGAACTAGCGGAGTACGGCCCAAGTATTGTCAAGAGTGGGTCCAGTCAGGA
CTAGAATGTGGGTAG
Protein sequenceShow/hide protein sequence
MAESGFNLPISGFLFGLSYTRRTKRPIGNRPSLWTRKLAKTVEIELPVPDTLPTSAESSSSSSSSAIQQGQQVSLEEDDVCWLHAISLTKLTDRTSGVRPKYCQEWVQSG
LECG