; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018671 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018671
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold3:16684696..16692093
RNA-Seq ExpressionSpg018671
SyntenySpg018671
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052217.1 hypothetical protein E6C27_scaffold207G00280 [Cucumis melo var. makuwa]2.8e-1051.11Show/hide
Query:  ISIDYMTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSLEEDDVHWLHTIFRTKLAGGPEGVG
        +SIDY+TEILS RLYGT+CT+                 VEI+L V DTLPTSAESS  +      +  DDV WLH +FR K  GGP GVG
Subjt:  ISIDYMTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSLEEDDVHWLHTIFRTKLAGGPEGVG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.5e-1144.95Show/hide
Query:  MTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSL----------------EEDDVHWLHTIFRTKLAGGPEGV
        MTEILSPRLYGT+CT+                 VEI+LPV DTLPTSAESS      W+ L                 EDDV WLH +FR K AGGP G 
Subjt:  MTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSL----------------EEDDVHWLHTIFRTKLAGGPEGV

Query:  GPNGPTDQK
            PT ++
Subjt:  GPNGPTDQK

TYK01784.1 hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa]2.8e-1051.11Show/hide
Query:  ISIDYMTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSLEEDDVHWLHTIFRTKLAGGPEGVG
        +SIDY+TEILS RLYGT+CT+                 VEI+L V DTLPTSAESS  +      +  DDV WLH +FR K  GGP GVG
Subjt:  ISIDYMTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSLEEDDVHWLHTIFRTKLAGGPEGVG

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]3.6e-1041.67Show/hide
Query:  MTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSLEEDDVHWLHTIFRTKLAGGPEGVGPNGPTDQKLQRYETN
        MTEILS RLYGT+CT+                 VEI+LPV DTLPTSAESS         +  DDV WLH++FR K A GP G G       ++    T+
Subjt:  MTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSLEEDDVHWLHTIFRTKLAGGPEGVGPNGPTDQKLQRYETN

Query:  RLELINQVSLHSLTVGHSTK
        R    NQ  +   T G S +
Subjt:  RLELINQVSLHSLTVGHSTK

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.5e-1144.95Show/hide
Query:  MTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSL----------------EEDDVHWLHTIFRTKLAGGPEGV
        MTEILSPRLYGT+CT+                 VEI+LPV DTLPTSAESS      W+ L                 EDDV WLH +FR K AGGP G 
Subjt:  MTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSL----------------EEDDVHWLHTIFRTKLAGGPEGV

Query:  GPNGPTDQK
            PT ++
Subjt:  GPNGPTDQK

TrEMBL top hitse value%identityAlignment
A0A5A7UCL6 Reverse transcriptase domain-containing protein1.4e-1051.11Show/hide
Query:  ISIDYMTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSLEEDDVHWLHTIFRTKLAGGPEGVG
        +SIDY+TEILS RLYGT+CT+                 VEI+L V DTLPTSAESS  +      +  DDV WLH +FR K  GGP GVG
Subjt:  ISIDYMTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSLEEDDVHWLHTIFRTKLAGGPEGVG

A0A5A7VMG9 Reverse transcriptase7.2e-1244.95Show/hide
Query:  MTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSL----------------EEDDVHWLHTIFRTKLAGGPEGV
        MTEILSPRLYGT+CT+                 VEI+LPV DTLPTSAESS      W+ L                 EDDV WLH +FR K AGGP G 
Subjt:  MTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSL----------------EEDDVHWLHTIFRTKLAGGPEGV

Query:  GPNGPTDQK
            PT ++
Subjt:  GPNGPTDQK

A0A5D3BRJ2 Reverse transcriptase domain-containing protein1.4e-1051.11Show/hide
Query:  ISIDYMTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSLEEDDVHWLHTIFRTKLAGGPEGVG
        +SIDY+TEILS RLYGT+CT+                 VEI+L V DTLPTSAESS  +      +  DDV WLH +FR K  GGP GVG
Subjt:  ISIDYMTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSLEEDDVHWLHTIFRTKLAGGPEGVG

A0A5D3CU23 Retrotrans_gag domain-containing protein1.8e-1041.67Show/hide
Query:  MTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSLEEDDVHWLHTIFRTKLAGGPEGVGPNGPTDQKLQRYETN
        MTEILS RLYGT+CT+                 VEI+LPV DTLPTSAESS         +  DDV WLH++FR K A GP G G       ++    T+
Subjt:  MTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSLEEDDVHWLHTIFRTKLAGGPEGVGPNGPTDQKLQRYETN

Query:  RLELINQVSLHSLTVGHSTK
        R    NQ  +   T G S +
Subjt:  RLELINQVSLHSLTVGHSTK

A0A5D3DX39 Reverse transcriptase7.2e-1244.95Show/hide
Query:  MTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSL----------------EEDDVHWLHTIFRTKLAGGPEGV
        MTEILSPRLYGT+CT+                 VEI+LPV DTLPTSAESS      W+ L                 EDDV WLH +FR K AGGP G 
Subjt:  MTEILSPRLYGTMCTK-----------------VEIDLPVLDTLPTSAESSTFQEGQWVSL----------------EEDDVHWLHTIFRTKLAGGPEGV

Query:  GPNGPTDQK
            PT ++
Subjt:  GPNGPTDQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGAAGAAGACAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAATATGCCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAG
AGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCTCTGGTTTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGATTTCTATTGACTACA
TGACTGAGATATTGAGCCCGAGGCTATATGGTACCATGTGCACAAAGGTAGAGATCGATCTCCCGGTGCTTGATACACTGCCAACGTCTGCTGAAAGTTCAACGTTTCAG
GAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCATACCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGAAGGGGTGGGACCTAATGGACCTACAGA
TCAGAAGCTCCAACGATACGAGACTAATCGGCTTGAACTCATTAACCAAGTTAGTCTCCATTCGTTAACTGTGGGTCACTCCACTAAAGACCCACAGCTGCACTCTTCTC
ACTGCAGAATATTTCTGTGTCCACGGGATACCCCCACTCTCGTGTCTACTACATGGACGCTTCGGATCAATATGTCTGTATCAAATACAAAGCGGGCCGTATCACATAGT
GTTACCAGGATAAGATTAAACAAAATTAATTACGAATCGGTCCCAATCACGCTTTCGCTTTTTGGAATTACGGAATTCCAATCCTTCATCGAGGATATCACGAAAGAAGT
GGCTGGAGAAGAGCAGCAAAAAGAACCTGAAGAAGTGGCTGGGGGAGAACAACCGACACTAACTGAGGAAGGGAAAAAATCGGAACAGAGTGATCAACCTACCAAAACTC
AGCAGGAAGTTCAGGAAAAGCAAACAGAAGATGTGCAGGAACAAGGAAACGGTCAAGGAGCCCAAGAGCAGCAAGTTCAGACAGAGATTGTGTCGGAGCCATCGTGTCGC
CGTCACTACAAGAAAAAGGCGAGGGGAATCAAGGTGGTTAGAACGGACACTCCATCGTCGTCAACAACGGAGTCTGAGAAGGAGAATTCAGAAAGGGAGGATCAAGAAAA
AGAGGAAACTGAAAAGAATGAGGGAGAAGAGGCCCTGACAAAGCAACAAGAAGACAGGGGCAAAGGAGTTGCTGAAGCAACAGTCGAAGCAGAGGAGGCTGAGCGTGAAG
AGCAAAGAATGCCGGACTTCTTGTTTGAAATGGGATTTGGTGATGACTTGCCACATTTCTTACGTGCTGGGATTACAAACCACGGATGGGATCAGTTCTGCGCGAAACCA
GAACTGGTAAACTCGAATATTGTCCGCGAATTCTTCGCAAATATAGATGAAGAGGAAGGTTTTCAAGCCATGGTCCGAGGGGTCGCTGTAGATTGGAGCCCAGGTGCGAT
AAACTCTCTATTCAATCTCCAGGATTTTCCACGCGTCGACTACAATGAGATGGTGGTAGCACCATCTAATGATCAACTGAACGCGGCTCCAACACCTGGTTGGGCTTCAT
CAAATTGCATCTTCTACCGACAACCCACGACTCTACAGTTTCCCGAGATAGAGTGCTCCTGGGCAGAGGTGTCTATAACTCCAGACGATGTCATTCTGCTTGACAAGGGG
ATTATTTACACGCCCAACCTAGCGAGGCTTCAACGGACTCAAGAAGCTCGGCAAGGGGGGCTGGTGTGTGGCATCCATCAAATCCTACAGCAACTTCAACTTTCTTCCAG
TAGGCAGGAGTATGCTGAGAGGCAAGCTCAGACCTACTGGACCTATGCTAAGAGGAGGGATGCCACCCTAAGGAGGGCGCTGCAGTAA
mRNA sequenceShow/hide mRNA sequence
TTGAAGAAGACAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAATATGCCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAG
AGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCTCTGGTTTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGATTTCTATTGACTACA
TGACTGAGATATTGAGCCCGAGGCTATATGGTACCATGTGCACAAAGGTAGAGATCGATCTCCCGGTGCTTGATACACTGCCAACGTCTGCTGAAAGTTCAACGTTTCAG
GAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCATACCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGAAGGGGTGGGACCTAATGGACCTACAGA
TCAGAAGCTCCAACGATACGAGACTAATCGGCTTGAACTCATTAACCAAGTTAGTCTCCATTCGTTAACTGTGGGTCACTCCACTAAAGACCCACAGCTGCACTCTTCTC
ACTGCAGAATATTTCTGTGTCCACGGGATACCCCCACTCTCGTGTCTACTACATGGACGCTTCGGATCAATATGTCTGTATCAAATACAAAGCGGGCCGTATCACATAGT
GTTACCAGGATAAGATTAAACAAAATTAATTACGAATCGGTCCCAATCACGCTTTCGCTTTTTGGAATTACGGAATTCCAATCCTTCATCGAGGATATCACGAAAGAAGT
GGCTGGAGAAGAGCAGCAAAAAGAACCTGAAGAAGTGGCTGGGGGAGAACAACCGACACTAACTGAGGAAGGGAAAAAATCGGAACAGAGTGATCAACCTACCAAAACTC
AGCAGGAAGTTCAGGAAAAGCAAACAGAAGATGTGCAGGAACAAGGAAACGGTCAAGGAGCCCAAGAGCAGCAAGTTCAGACAGAGATTGTGTCGGAGCCATCGTGTCGC
CGTCACTACAAGAAAAAGGCGAGGGGAATCAAGGTGGTTAGAACGGACACTCCATCGTCGTCAACAACGGAGTCTGAGAAGGAGAATTCAGAAAGGGAGGATCAAGAAAA
AGAGGAAACTGAAAAGAATGAGGGAGAAGAGGCCCTGACAAAGCAACAAGAAGACAGGGGCAAAGGAGTTGCTGAAGCAACAGTCGAAGCAGAGGAGGCTGAGCGTGAAG
AGCAAAGAATGCCGGACTTCTTGTTTGAAATGGGATTTGGTGATGACTTGCCACATTTCTTACGTGCTGGGATTACAAACCACGGATGGGATCAGTTCTGCGCGAAACCA
GAACTGGTAAACTCGAATATTGTCCGCGAATTCTTCGCAAATATAGATGAAGAGGAAGGTTTTCAAGCCATGGTCCGAGGGGTCGCTGTAGATTGGAGCCCAGGTGCGAT
AAACTCTCTATTCAATCTCCAGGATTTTCCACGCGTCGACTACAATGAGATGGTGGTAGCACCATCTAATGATCAACTGAACGCGGCTCCAACACCTGGTTGGGCTTCAT
CAAATTGCATCTTCTACCGACAACCCACGACTCTACAGTTTCCCGAGATAGAGTGCTCCTGGGCAGAGGTGTCTATAACTCCAGACGATGTCATTCTGCTTGACAAGGGG
ATTATTTACACGCCCAACCTAGCGAGGCTTCAACGGACTCAAGAAGCTCGGCAAGGGGGGCTGGTGTGTGGCATCCATCAAATCCTACAGCAACTTCAACTTTCTTCCAG
TAGGCAGGAGTATGCTGAGAGGCAAGCTCAGACCTACTGGACCTATGCTAAGAGGAGGGATGCCACCCTAAGGAGGGCGCTGCAGTAA
Protein sequenceShow/hide protein sequence
LKKTGKAHAKPAIAESEFNMPTSGFLFGLSYTEGTKRAQDFRAKQEDLWFLWFFEHSGVYKLNQKLYLISIDYMTEILSPRLYGTMCTKVEIDLPVLDTLPTSAESSTFQ
EGQWVSLEEDDVHWLHTIFRTKLAGGPEGVGPNGPTDQKLQRYETNRLELINQVSLHSLTVGHSTKDPQLHSSHCRIFLCPRDTPTLVSTTWTLRINMSVSNTKRAVSHS
VTRIRLNKINYESVPITLSLFGITEFQSFIEDITKEVAGEEQQKEPEEVAGGEQPTLTEEGKKSEQSDQPTKTQQEVQEKQTEDVQEQGNGQGAQEQQVQTEIVSEPSCR
RHYKKKARGIKVVRTDTPSSSTTESEKENSEREDQEKEETEKNEGEEALTKQQEDRGKGVAEATVEAEEAEREEQRMPDFLFEMGFGDDLPHFLRAGITNHGWDQFCAKP
ELVNSNIVREFFANIDEEEGFQAMVRGVAVDWSPGAINSLFNLQDFPRVDYNEMVVAPSNDQLNAAPTPGWASSNCIFYRQPTTLQFPEIECSWAEVSITPDDVILLDKG
IIYTPNLARLQRTQEARQGGLVCGIHQILQQLQLSSSRQEYAERQAQTYWTYAKRRDATLRRALQ