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Spg018672 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018672
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionATP-dependent RNA helicase DHX36-like protein
Genome locationscaffold3:12081166..12083689
RNA-Seq ExpressionSpg018672
SyntenySpg018672
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6745799.1 hypothetical protein POTOM_050308 [Populus tomentosa]2.1e-1280.39Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        M ETSITINDV FVVDCGKAKETSY ALNNT CLLPSWISKAAA+  K ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS

KAG6746825.1 hypothetical protein POTOM_049194 [Populus tomentosa]2.1e-1280.39Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        M ETSITINDV FVVDCGKAKETSY ALNNT CLLPSWISKAAA+  K ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS

KDP46986.1 hypothetical protein JCGZ_02422 [Jatropha curcas]2.1e-1280.39Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        M ETSITINDV FVVDCGKAKETSY ALNNT CLLPSWISKAAA+  K ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS

XP_011000486.1 PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Populus euphratica]2.1e-1280.39Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        M ETSITINDV FVVDCGKAKETSY ALNNT CLLPSWISKAAA+  K ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS

XP_037496022.1 DExH-box ATP-dependent RNA helicase DExH3, partial [Jatropha curcas]2.1e-1280.39Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        M ETSITINDV FVVDCGKAKETSY ALNNT CLLPSWISKAAA+  K ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS

TrEMBL top hitse value%identityAlignment
A0A067LES7 Uncharacterized protein1.0e-1280.39Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        M ETSITINDV FVVDCGKAKETSY ALNNT CLLPSWISKAAA+  K ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS

A0A2K1XHT6 Uncharacterized protein1.0e-1280.39Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        M ETSITINDV FVVDCGKAKETSY ALNNT CLLPSWISKAAA+  K ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS

A0A4U5P2K9 ATP-dependent RNA helicase DHX36-like isoform X11.0e-1280.39Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        M ETSITINDV FVVDCGKAKETSY ALNNT CLLPSWISKAAA+  K ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS

A0A6M2EY54 Uncharacterized protein1.0e-1280.39Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        M ETSITINDV FVVDCGKAKETSY ALNNT CLLPSWISKAAA+  K ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS

G7LCG1 ATP-dependent RNA helicase DHX36-like protein1.3e-1272.41Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKSVALKTME
        M ETSITINDV FVVDCGKAKETSY ALNNT CLLPSWISKAAA+  K ++  +++ E
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKSVALKTME

SwissProt top hitse value%identityAlignment
B2RR83 3'-5' RNA helicase YTHDC26.7e-0652.94Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        + ETSIT+NDV FV+D GK KE S+ ALN    L   WISKA+A   K ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS

F4HYJ7 DExH-box ATP-dependent RNA helicase DExH31.7e-1474.51Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        M ETSITINDV +V+DCGKAKETSY ALNNT CLLPSWISKAAA+  + ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS

F4ILR7 DExH-box ATP-dependent RNA helicase DExH11.8e-1164.71Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        + E+SITI+DV +VVDCGKAKETSY ALN   CLLPSWISKA+A   + ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS

F4IM84 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial2.3e-1472.55Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        + ETSITINDV FV+DCGKAKETSY ALNNT CLLPSWISK +AQ  + ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS

Q9H6S0 3'-5' RNA helicase YTHDC26.7e-0652.94Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        + ETSIT+NDV FV+D GK KE S+ ALN    L   WISKA+A   K ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS

Arabidopsis top hitse value%identityAlignment
AT1G48650.1 DEA(D/H)-box RNA helicase family protein1.2e-1574.51Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        M ETSITINDV +V+DCGKAKETSY ALNNT CLLPSWISKAAA+  + ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS

AT1G48650.2 DEA(D/H)-box RNA helicase family protein1.2e-1574.51Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        M ETSITINDV +V+DCGKAKETSY ALNNT CLLPSWISKAAA+  + ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS

AT2G01130.1 DEA(D/H)-box RNA helicase family protein1.6e-1572.55Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        + ETSITINDV FV+DCGKAKETSY ALNNT CLLPSWISK +AQ  + ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS

AT2G35920.1 RNA helicase family protein1.3e-1264.71Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        + E+SITI+DV +VVDCGKAKETSY ALN   CLLPSWISKA+A   + ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS

AT5G04895.1 DEA(D/H)-box RNA helicase family protein2.3e-1470.59Show/hide
Query:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS
        M E SITINDV FVVDCGKAKET+Y ALNNT CLLPSWIS+A+A+  + ++
Subjt:  MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGAGACTAGTATCACCATCAATGATGTTGGTTTTGTTGTTGATTGTGGAAAAGCGAAGGAGACATCCTATGCTGCACTAAATAACACTCGTTGTTTGCTTCCATC
CTGGATCTCTAAGGCTGCTGCCCAACTAAACAAAGAGAAATCAGTTGCTTTGAAAACAATGGAGGATGGCCAGGTTATGCTGTATTCGGTAGTTTTTCTTGTTGCTCCAG
AGATGATGCAAATTTTGTTATGCAAGTGCACGGTAGCTCAAGATCCTTGCAACCTTGGTGCTGTGTTATCTTTGAAGGAGGGAGATCATCCTCTCCAATTTATTCTCAAG
AGTTCTAGGCAGCATGGAGACTTTTTACTAGTTGGCATACATAATTATCAAGCTATGAGATGTTCCAAAGTATATTGCTTATTGCTTGACGAATTGATCCTCATGAAA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGAGACTAGTATCACCATCAATGATGTTGGTTTTGTTGTTGATTGTGGAAAAGCGAAGGAGACATCCTATGCTGCACTAAATAACACTCGTTGTTTGCTTCCATC
CTGGATCTCTAAGGCTGCTGCCCAACTAAACAAAGAGAAATCAGTTGCTTTGAAAACAATGGAGGATGGCCAGGTTATGCTGTATTCGGTAGTTTTTCTTGTTGCTCCAG
AGATGATGCAAATTTTGTTATGCAAGTGCACGGTAGCTCAAGATCCTTGCAACCTTGGTGCTGTGTTATCTTTGAAGGAGGGAGATCATCCTCTCCAATTTATTCTCAAG
AGTTCTAGGCAGCATGGAGACTTTTTACTAGTTGGCATACATAATTATCAAGCTATGAGATGTTCCAAAGTATATTGCTTATTGCTTGACGAATTGATCCTCATGAAA
Protein sequenceShow/hide protein sequence
MVETSITINDVGFVVDCGKAKETSYAALNNTRCLLPSWISKAAAQLNKEKSVALKTMEDGQVMLYSVVFLVAPEMMQILLCKCTVAQDPCNLGAVLSLKEGDHPLQFILK
SSRQHGDFLLVGIHNYQAMRCSKVYCLLLDELILMK