; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018696 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018696
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold3:19178026..19184660
RNA-Seq ExpressionSpg018696
SyntenySpg018696
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040575.1 putative integrase [Cucumis melo var. makuwa]5.1e-1946.11Show/hide
Query:  RQNQDGTQDPTQSQSEKGSSTPREHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWSFIRF-------ELHRRNKEHSGVYKLNQKLYLG
        RQ   G  +P + + +     P +HF+ERVK EEEEEFRGLRLKKIGKSSC ASHCRI VQ      F+ F       E+H+ N++   +  L       
Subjt:  RQNQDGTQDPTQSQSEKGSSTPREHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWSFIRF-------ELHRRNKEHSGVYKLNQKLYLG

Query:  ISGQIGWESRFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPD
        +  + G   ++     RGNR SLQ GELDKT             PL T  VLRDNDAVVEIEL VPD
Subjt:  ISGQIGWESRFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPD

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-1462.77Show/hide
Query:  VYKLNQKLYLGI-SGQIG-WESRFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPRSAESSRSSSS
        V+K NQKLYL I SG+ G W+        RGNRSSLQ+GELD T             PL TLSVLRDNDAVVEIELPVPDTLP SAESS S+SS
Subjt:  VYKLNQKLYLGI-SGQIG-WESRFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPRSAESSRSSSS

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.1e-1649.68Show/hide
Query:  EHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWSFIRFELHRRNKEHSGVYKLNQKLYLGI-SGQIG-WESRFHFFRPRGNRSSLQTGEL
        EHF+ERVK EEEEEFR ++ +   +S+  +S             F+ F      +E   V+K NQKLYL I SG+ G W+       PRGNRSSLQTGEL
Subjt:  EHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWSFIRFELHRRNKEHSGVYKLNQKLYLGI-SGQIG-WESRFHFFRPRGNRSSLQTGEL

Query:  DKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPRSAESSRSSSSKTRG
        DKT   +          L TLSVLRDNDAVVEIELPVPD LP SA+SS S+S  + G
Subjt:  DKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPRSAESSRSSSSKTRG

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.0e-1942.55Show/hide
Query:  EHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWS---------FIRFELHRRNKEHSGVYKLNQKLYLGI-SGQIG-WESRFHFFRPRGN
        EHF+ERVK EEEEEFRGLRLKKIGKSSCKA+HCRI       WS         F+ F       E   V K NQKLY  I SG+ G W+       PRGN
Subjt:  EHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWS---------FIRFELHRRNKEHSGVYKLNQKLYLGI-SGQIG-WESRFHFFRPRGN

Query:  RSSLQTGELDKTPEAIWYRVH------------TGYIPLLTLSVLRDNDAVV----------------------------------------EIELPVPD
        RSSLQTG+LDK   +I Y                   PL TLSVLRDNDAVV                                        EIEL VPD
Subjt:  RSSLQTGELDKTPEAIWYRVH------------TGYIPLLTLSVLRDNDAVV----------------------------------------EIELPVPD

Query:  TLPRSAESSRSSSSKTRGASGASTYRARKIQRSSR
        TLP SAESS S+SS          Y+   ++ +SR
Subjt:  TLPRSAESSRSSSSKTRGASGASTYRARKIQRSSR

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.9e-1462.77Show/hide
Query:  VYKLNQKLYLGI-SGQIG-WESRFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPRSAESSRSSSS
        V+K NQKLYL I SG+ G W+        RGNRSSLQ+GELD T             PL TLSVLRDNDAVVEIELPVPDTLP SAESS S+SS
Subjt:  VYKLNQKLYLGI-SGQIG-WESRFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPRSAESSRSSSS

TrEMBL top hitse value%identityAlignment
A0A5A7TGM2 Putative integrase2.4e-1946.11Show/hide
Query:  RQNQDGTQDPTQSQSEKGSSTPREHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWSFIRF-------ELHRRNKEHSGVYKLNQKLYLG
        RQ   G  +P + + +     P +HF+ERVK EEEEEFRGLRLKKIGKSSC ASHCRI VQ      F+ F       E+H+ N++   +  L       
Subjt:  RQNQDGTQDPTQSQSEKGSSTPREHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWSFIRF-------ELHRRNKEHSGVYKLNQKLYLG

Query:  ISGQIGWESRFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPD
        +  + G   ++     RGNR SLQ GELDKT             PL T  VLRDNDAVVEIEL VPD
Subjt:  ISGQIGWESRFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPD

A0A5A7V9N3 Reverse transcriptase1.4e-1462.77Show/hide
Query:  VYKLNQKLYLGI-SGQIG-WESRFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPRSAESSRSSSS
        V+K NQKLYL I SG+ G W+        RGNRSSLQ+GELD T             PL TLSVLRDNDAVVEIELPVPDTLP SAESS S+SS
Subjt:  VYKLNQKLYLGI-SGQIG-WESRFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPRSAESSRSSSS

A0A5D3BZ50 Pentatricopeptide repeat-containing protein1.5e-1649.68Show/hide
Query:  EHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWSFIRFELHRRNKEHSGVYKLNQKLYLGI-SGQIG-WESRFHFFRPRGNRSSLQTGEL
        EHF+ERVK EEEEEFR ++ +   +S+  +S             F+ F      +E   V+K NQKLYL I SG+ G W+       PRGNRSSLQTGEL
Subjt:  EHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWSFIRFELHRRNKEHSGVYKLNQKLYLGI-SGQIG-WESRFHFFRPRGNRSSLQTGEL

Query:  DKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPRSAESSRSSSSKTRG
        DKT   +          L TLSVLRDNDAVVEIELPVPD LP SA+SS S+S  + G
Subjt:  DKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPRSAESSRSSSSKTRG

A0A5D3CAC6 Uncharacterized protein4.9e-2042.55Show/hide
Query:  EHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWS---------FIRFELHRRNKEHSGVYKLNQKLYLGI-SGQIG-WESRFHFFRPRGN
        EHF+ERVK EEEEEFRGLRLKKIGKSSCKA+HCRI       WS         F+ F       E   V K NQKLY  I SG+ G W+       PRGN
Subjt:  EHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWS---------FIRFELHRRNKEHSGVYKLNQKLYLGI-SGQIG-WESRFHFFRPRGN

Query:  RSSLQTGELDKTPEAIWYRVH------------TGYIPLLTLSVLRDNDAVV----------------------------------------EIELPVPD
        RSSLQTG+LDK   +I Y                   PL TLSVLRDNDAVV                                        EIEL VPD
Subjt:  RSSLQTGELDKTPEAIWYRVH------------TGYIPLLTLSVLRDNDAVV----------------------------------------EIELPVPD

Query:  TLPRSAESSRSSSSKTRGASGASTYRARKIQRSSR
        TLP SAESS S+SS          Y+   ++ +SR
Subjt:  TLPRSAESSRSSSSKTRGASGASTYRARKIQRSSR

A0A5D3DSY7 Putative Retrotransposon protein1.4e-1462.77Show/hide
Query:  VYKLNQKLYLGI-SGQIG-WESRFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPRSAESSRSSSS
        V+K NQKLYL I SG+ G W+        RGNRSSLQ+GELD T             PL TLSVLRDNDAVVEIELPVPDTLP SAESS S+SS
Subjt:  VYKLNQKLYLGI-SGQIG-WESRFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPRSAESSRSSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACATGGCAGAGTCATGCCACCACGTACCAGCAGACGACGCAGGCAGAATCAGGACGGGACGCAGGATCCTACCCAAAGTCAATCTGAAAAGGGATCCAGTACCCC
GAGAGAGCACTTTAAGGAGAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGAATCT
GTGTTCAACCTGTCAACCTCTGGTCTTTTATTCGGTTTGAGCTACACAGAAGGAATAAAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGGCATTTCT
GGACAAATTGGTTGGGAATCTCGTTTTCATTTCTTCCGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGAGGCTATATGGTACCGTGT
GCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAAGGTCTGCTGAAAGTT
CTAGATCAAGCTCCAGTAAAACGCGTGGAGCATCTGGTGCTTCCACGTATCGCGCAAGGAAGATCCAACGGTCTAGCCGTTGGACAGCACATCACGCATTTACCAGGCGA
TTATTTTACCGTTCATGGGGATTAATTTCCCATGATTACATGCAAATTAAACAAATATACGGTAAGTCTGAAATGGCTAGAACAAGAGGAAGAAGGGAAAGAGATACTGA
AGAAGAAGAGGTGCCTGTTACACCCGAGGCAACGAGGAAGAGAACGAAGAGAATGAAAACATCAGAAGAAAGAGAGGCCAAGAGATGGAGAAGGCAACAACGAGCTGAAG
CAACAGAGGTAGTGAGGAAAGTGATTGAGGATATCACTGAAGAAGTGGCTGAGGACGAGCAGCCAAAAGAACCTGAAGAAGTGGCTGGGGGAGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGACATGGCAGAGTCATGCCACCACGTACCAGCAGACGACGCAGGCAGAATCAGGACGGGACGCAGGATCCTACCCAAAGTCAATCTGAAAAGGGATCCAGTACCCC
GAGAGAGCACTTTAAGGAGAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGAATCT
GTGTTCAACCTGTCAACCTCTGGTCTTTTATTCGGTTTGAGCTACACAGAAGGAATAAAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGGCATTTCT
GGACAAATTGGTTGGGAATCTCGTTTTCATTTCTTCCGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGAGGCTATATGGTACCGTGT
GCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAAGGTCTGCTGAAAGTT
CTAGATCAAGCTCCAGTAAAACGCGTGGAGCATCTGGTGCTTCCACGTATCGCGCAAGGAAGATCCAACGGTCTAGCCGTTGGACAGCACATCACGCATTTACCAGGCGA
TTATTTTACCGTTCATGGGGATTAATTTCCCATGATTACATGCAAATTAAACAAATATACGGTAAGTCTGAAATGGCTAGAACAAGAGGAAGAAGGGAAAGAGATACTGA
AGAAGAAGAGGTGCCTGTTACACCCGAGGCAACGAGGAAGAGAACGAAGAGAATGAAAACATCAGAAGAAAGAGAGGCCAAGAGATGGAGAAGGCAACAACGAGCTGAAG
CAACAGAGGTAGTGAGGAAAGTGATTGAGGATATCACTGAAGAAGTGGCTGAGGACGAGCAGCCAAAAGAACCTGAAGAAGTGGCTGGGGGAGAGTAG
Protein sequenceShow/hide protein sequence
MRHGRVMPPRTSRRRRQNQDGTQDPTQSQSEKGSSTPREHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWSFIRFELHRRNKEHSGVYKLNQKLYLGIS
GQIGWESRFHFFRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPRSAESSRSSSSKTRGASGASTYRARKIQRSSRWTAHHAFTRR
LFYRSWGLISHDYMQIKQIYGKSEMARTRGRRERDTEEEEVPVTPEATRKRTKRMKTSEEREAKRWRRQQRAEATEVVRKVIEDITEEVAEDEQPKEPEEVAGGE