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Spg018720 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018720
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold3:14745112..14756470
RNA-Seq ExpressionSpg018720
SyntenySpg018720
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025361.1 uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa]2.9e-1546.62Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPMPDKLAKF---------IFQTELSQGCTSCSTVQQGQQVSLEKDDVCWLHAISWTKLAGSS
        MTEILS RLYGTVCTQ                 VEIELP+ D L  F          F  ++  G      V  G    +  DDVCWLHA+   K AG  
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPMPDKLAKF---------IFQTELSQGCTSCSTVQQGQQVSLEKDDVCWLHAISWTKLAGSS

Query:  RGGVTTWSHATTYQQMTQVESGRDAGSYPRPRG
         G     SHATTYQQ TQ ESGRDAGSYPR  G
Subjt:  RGGVTTWSHATTYQQMTQVESGRDAGSYPRPRG

KAA0037251.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-1335.26Show/hide
Query:  PRGNRPSLQAKELAKATSIDYMTEILSPRLYGTVCTQVEIELPMPDKLAKFIFQTELSQGCTSCSTVQ-----------------------------QGQ
        PRGNRPSLQ  EL K  ++ +    LS  L       VEIELP+ D L      +  S G  S + ++                             +G 
Subjt:  PRGNRPSLQAKELAKATSIDYMTEILSPRLYGTVCTQVEIELPMPDKLAKFIFQTELSQGCTSCSTVQ-----------------------------QGQ

Query:  QVSLEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQVESGRDAGSYPRPRGNRPSLQARELAKAVEIELPVPDKLPESAKISQI
           +  DDVCWLHA+   K  G  RGGVTTWSHATTY Q TQ E G DAGSYPR         A+E  +  +     P+K+ E  ++ ++
Subjt:  QVSLEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQVESGRDAGSYPRPRGNRPSLQARELAKAVEIELPVPDKLPESAKISQI

KAA0066738.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.9e-1745.45Show/hide
Query:  PRGNRPSLQAKELAKATSIDYMT-------EILSPRLYGTVCTQVEIELPMPDKLAKFIFQTELSQGCTSCSTVQQGQQVSLEKDDVCWLHAISWTKLAG
        PRGNRPSLQ  EL K       T       +++   +       VEIELP PD L    ++   S    +     +G    +  DDVCWLHA+   K AG
Subjt:  PRGNRPSLQAKELAKATSIDYMT-------EILSPRLYGTVCTQVEIELPMPDKLAKFIFQTELSQGCTSCSTVQQGQQVSLEKDDVCWLHAISWTKLAG

Query:  SSRGGVTTWSHATTYQQMTQVESGRDAGSYPR
           GGVTTWSHATTYQQ TQ ES  DAGSYPR
Subjt:  SSRGGVTTWSHATTYQQMTQVESGRDAGSYPR

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]5.4e-1449.09Show/hide
Query:  GTVCTQV-----------------EIELPMPDKLAKFIFQTELSQGCTSCSTVQQGQQVSLEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQV
        GTVCTQV                 EIELP+PD L+      E S   +  + + +G       DDVCWLHAI   K+ G   GGVTTWSHATTYQQ TQ 
Subjt:  GTVCTQV-----------------EIELPMPDKLAKFIFQTELSQGCTSCSTVQQGQQVSLEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQV

Query:  ESGRDAGSYP
        ESG DAGSYP
Subjt:  ESGRDAGSYP

TYK07530.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-1335.26Show/hide
Query:  PRGNRPSLQAKELAKATSIDYMTEILSPRLYGTVCTQVEIELPMPDKLAKFIFQTELSQGCTSCSTVQ-----------------------------QGQ
        PRGNRPSLQ  EL K  ++ +    LS  L       VEIELP+ D L      +  S G  S + ++                             +G 
Subjt:  PRGNRPSLQAKELAKATSIDYMTEILSPRLYGTVCTQVEIELPMPDKLAKFIFQTELSQGCTSCSTVQ-----------------------------QGQ

Query:  QVSLEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQVESGRDAGSYPRPRGNRPSLQARELAKAVEIELPVPDKLPESAKISQI
           +  DDVCWLHA+   K  G  RGGVTTWSHATTY Q TQ E G DAGSYPR         A+E  +  +     P+K+ E  ++ ++
Subjt:  QVSLEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQVESGRDAGSYPRPRGNRPSLQARELAKAVEIELPVPDKLPESAKISQI

TrEMBL top hitse value%identityAlignment
A0A5A7T6M8 DNA/RNA polymerases superfamily protein1.3e-1335.26Show/hide
Query:  PRGNRPSLQAKELAKATSIDYMTEILSPRLYGTVCTQVEIELPMPDKLAKFIFQTELSQGCTSCSTVQ-----------------------------QGQ
        PRGNRPSLQ  EL K  ++ +    LS  L       VEIELP+ D L      +  S G  S + ++                             +G 
Subjt:  PRGNRPSLQAKELAKATSIDYMTEILSPRLYGTVCTQVEIELPMPDKLAKFIFQTELSQGCTSCSTVQ-----------------------------QGQ

Query:  QVSLEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQVESGRDAGSYPRPRGNRPSLQARELAKAVEIELPVPDKLPESAKISQI
           +  DDVCWLHA+   K  G  RGGVTTWSHATTY Q TQ E G DAGSYPR         A+E  +  +     P+K+ E  ++ ++
Subjt:  QVSLEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQVESGRDAGSYPRPRGNRPSLQARELAKAVEIELPVPDKLPESAKISQI

A0A5D3BNX1 Zf-CCHC domain-containing protein2.6e-1449.09Show/hide
Query:  GTVCTQV-----------------EIELPMPDKLAKFIFQTELSQGCTSCSTVQQGQQVSLEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQV
        GTVCTQV                 EIELP+PD L+      E S   +  + + +G       DDVCWLHAI   K+ G   GGVTTWSHATTYQQ TQ 
Subjt:  GTVCTQV-----------------EIELPMPDKLAKFIFQTELSQGCTSCSTVQQGQQVSLEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQV

Query:  ESGRDAGSYP
        ESG DAGSYP
Subjt:  ESGRDAGSYP

A0A5D3C867 DNA/RNA polymerases superfamily protein1.3e-1335.26Show/hide
Query:  PRGNRPSLQAKELAKATSIDYMTEILSPRLYGTVCTQVEIELPMPDKLAKFIFQTELSQGCTSCSTVQ-----------------------------QGQ
        PRGNRPSLQ  EL K  ++ +    LS  L       VEIELP+ D L      +  S G  S + ++                             +G 
Subjt:  PRGNRPSLQAKELAKATSIDYMTEILSPRLYGTVCTQVEIELPMPDKLAKFIFQTELSQGCTSCSTVQ-----------------------------QGQ

Query:  QVSLEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQVESGRDAGSYPRPRGNRPSLQARELAKAVEIELPVPDKLPESAKISQI
           +  DDVCWLHA+   K  G  RGGVTTWSHATTY Q TQ E G DAGSYPR         A+E  +  +     P+K+ E  ++ ++
Subjt:  QVSLEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQVESGRDAGSYPRPRGNRPSLQARELAKAVEIELPVPDKLPESAKISQI

A0A5D3DIE3 Retrotrans_gag domain-containing protein1.4e-1546.62Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPMPDKLAKF---------IFQTELSQGCTSCSTVQQGQQVSLEKDDVCWLHAISWTKLAGSS
        MTEILS RLYGTVCTQ                 VEIELP+ D L  F          F  ++  G      V  G    +  DDVCWLHA+   K AG  
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPMPDKLAKF---------IFQTELSQGCTSCSTVQQGQQVSLEKDDVCWLHAISWTKLAGSS

Query:  RGGVTTWSHATTYQQMTQVESGRDAGSYPRPRG
         G     SHATTYQQ TQ ESGRDAGSYPR  G
Subjt:  RGGVTTWSHATTYQQMTQVESGRDAGSYPRPRG

A0A5D3DVW9 DNA/RNA polymerases superfamily protein4.3e-1745.45Show/hide
Query:  PRGNRPSLQAKELAKATSIDYMT-------EILSPRLYGTVCTQVEIELPMPDKLAKFIFQTELSQGCTSCSTVQQGQQVSLEKDDVCWLHAISWTKLAG
        PRGNRPSLQ  EL K       T       +++   +       VEIELP PD L    ++   S    +     +G    +  DDVCWLHA+   K AG
Subjt:  PRGNRPSLQAKELAKATSIDYMT-------EILSPRLYGTVCTQVEIELPMPDKLAKFIFQTELSQGCTSCSTVQQGQQVSLEKDDVCWLHAISWTKLAG

Query:  SSRGGVTTWSHATTYQQMTQVESGRDAGSYPR
           GGVTTWSHATTYQQ TQ ES  DAGSYPR
Subjt:  SSRGGVTTWSHATTYQQMTQVESGRDAGSYPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGGAAGTAGGTTTAATTTCAGGAGAAAAGTAGATGATAGTAGAGAAGCACGAATTTTGAATAGCTGTGTTCGGGGGATTTCTGGACAAATCTCTTGGGGATCTCA
TTTTCATTCCTTCAAGCCAAGAGGAAATAGGCCGAGTCTACAGGCCAAGGAACTAGCCAAGGCTACTTCCATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATG
GTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGATGCCTGATAAACTGGCAAAGTTTATTTTCCAAACTGAGTTAAGTCAGGGTTGTACGTCATGTTCAACGGTTCAA
CAGGGTCAACAGGTATCGTTAGAGAAGGACGATGTCTGTTGGCTTCACGCCATCTCCTGGACTAAGCTAGCAGGTAGTTCGAGAGGGGGTGTGACAACTTGGAGTCATGC
CACCACGTACCAACAGATGACGCAGGTAGAATCAGGACGGGACGCAGGATCCTACCCAAGGCCAAGAGGAAATAGGCCAAGTCTACAGGCCAGGGAGCTAGCCAAGGCTG
TAGAGATCGAGCTCCCAGTACCTGATAAACTGCCAGAGTCTGCTAAAATCTCCCAGATCAAGTTTATTTTCCAAACTGAGTTAAGTCAGGGCTGCGCGTCATGTTCAACG
GTTCAACAGGTATCGTTAGAGAAGGACGATGTCCGTTGGCTTCACGCCCTCTCCCGGACTAAGCTAGCATGTCGAGACGTCGTGGCCGGCGTCTCGACGCTGACGGTGAT
TTGGGCTGTCCTCTATTTACGTAGCGTCAAGATGCCGCGAGGCAGGACAAGTATCTCCATTGGCATGAGGCCTTTTGGGGTAATCCAAAAGCAAAGCCATGAGGGTTTAT
GCCCAAAGTGGACAATATCATACCATTGTGGAGATATGTGGGTGTCTGTTGTCCCTTATAAGTGGTATCAGAGCCATGCCCCAAAGGTAGCCATGTCGGGTGGAATCCTT
GGGGTGCCGAACAAAGATGTTGTGAGCCTTAATAGTCATGGTGAAGGTCCGTGGTTGTGCTCTGGGAAGGCGGGTATACTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGGAAGTAGGTTTAATTTCAGGAGAAAAGTAGATGATAGTAGAGAAGCACGAATTTTGAATAGCTGTGTTCGGGGGATTTCTGGACAAATCTCTTGGGGATCTCA
TTTTCATTCCTTCAAGCCAAGAGGAAATAGGCCGAGTCTACAGGCCAAGGAACTAGCCAAGGCTACTTCCATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATG
GTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGATGCCTGATAAACTGGCAAAGTTTATTTTCCAAACTGAGTTAAGTCAGGGTTGTACGTCATGTTCAACGGTTCAA
CAGGGTCAACAGGTATCGTTAGAGAAGGACGATGTCTGTTGGCTTCACGCCATCTCCTGGACTAAGCTAGCAGGTAGTTCGAGAGGGGGTGTGACAACTTGGAGTCATGC
CACCACGTACCAACAGATGACGCAGGTAGAATCAGGACGGGACGCAGGATCCTACCCAAGGCCAAGAGGAAATAGGCCAAGTCTACAGGCCAGGGAGCTAGCCAAGGCTG
TAGAGATCGAGCTCCCAGTACCTGATAAACTGCCAGAGTCTGCTAAAATCTCCCAGATCAAGTTTATTTTCCAAACTGAGTTAAGTCAGGGCTGCGCGTCATGTTCAACG
GTTCAACAGGTATCGTTAGAGAAGGACGATGTCCGTTGGCTTCACGCCCTCTCCCGGACTAAGCTAGCATGTCGAGACGTCGTGGCCGGCGTCTCGACGCTGACGGTGAT
TTGGGCTGTCCTCTATTTACGTAGCGTCAAGATGCCGCGAGGCAGGACAAGTATCTCCATTGGCATGAGGCCTTTTGGGGTAATCCAAAAGCAAAGCCATGAGGGTTTAT
GCCCAAAGTGGACAATATCATACCATTGTGGAGATATGTGGGTGTCTGTTGTCCCTTATAAGTGGTATCAGAGCCATGCCCCAAAGGTAGCCATGTCGGGTGGAATCCTT
GGGGTGCCGAACAAAGATGTTGTGAGCCTTAATAGTCATGGTGAAGGTCCGTGGTTGTGCTCTGGGAAGGCGGGTATACTCTAA
Protein sequenceShow/hide protein sequence
MTGSRFNFRRKVDDSREARILNSCVRGISGQISWGSHFHSFKPRGNRPSLQAKELAKATSIDYMTEILSPRLYGTVCTQVEIELPMPDKLAKFIFQTELSQGCTSCSTVQ
QGQQVSLEKDDVCWLHAISWTKLAGSSRGGVTTWSHATTYQQMTQVESGRDAGSYPRPRGNRPSLQARELAKAVEIELPVPDKLPESAKISQIKFIFQTELSQGCASCST
VQQVSLEKDDVRWLHALSRTKLACRDVVAGVSTLTVIWAVLYLRSVKMPRGRTSISIGMRPFGVIQKQSHEGLCPKWTISYHCGDMWVSVVPYKWYQSHAPKVAMSGGIL
GVPNKDVVSLNSHGEGPWLCSGKAGIL