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Spg018726 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018726
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:20664124..20666432
RNA-Seq ExpressionSpg018726
SyntenySpg018726
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.9e-2250.34Show/hide
Query:  LFGLSYTGRTKRPRGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAVVEIELPMRDSLPTSAESSSSSSCTWVEL-----YIESVCYFPNRV
        LFGL Y   TKRPRGNR+SLQT +L KT              L TLSVLRDNDAVVEIELP+ D+LPTSAESS S+S TW+EL     ++E   YF N+V
Subjt:  LFGLSYTGRTKRPRGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAVVEIELPMRDSLPTSAESSSSSSCTWVEL-----YIESVCYFPNRV

Query:  MSRLHPMFNDSAGSTDV----ESVQIELAEYDPSIVESESRVMPPHTSR
        MS LH +FN S GST +        +    +  +       VMPP TSR
Subjt:  MSRLHPMFNDSAGSTDV----ESVQIELAEYDPSIVESESRVMPPHTSR

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]2.4e-1954.76Show/hide
Query:  LFGLSYTGRTKRPRGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAV-----------VEIELPMRDSLPTSAESSSSSSCTWVELYIESV-
        L GLSY   T RPRGNR SLQT KL KT              L TLSVLRDNDAV           VEIELPM D+LPT AES  S+S TW+ELY ESV 
Subjt:  LFGLSYTGRTKRPRGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAV-----------VEIELPMRDSLPTSAESSSSSSCTWVELYIESV-

Query:  ----CYFPNRVMSRLHPMFNDSAGST
            CY  N+VMS LH +FN S G T
Subjt:  ----CYFPNRVMSRLHPMFNDSAGST

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-1959.62Show/hide
Query:  RGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAVVEIELPMRDSLPTSAESSSSSSCTWVELYIESV-----CYFPNRVMSRLHPMFNDSAG
        RGNRSSLQ+ +L  T             PL TLSVLRDNDAVVEIELP+ D+LPTSAESS S+S TW+ELY ESV     CYF N+VMSRLH +F+   G
Subjt:  RGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAVVEIELPMRDSLPTSAESSSSSSCTWVELYIESV-----CYFPNRVMSRLHPMFNDSAG

Query:  STDV
        ST +
Subjt:  STDV

TYK01618.1 uncharacterized protein E5676_scaffold451G002250 [Cucumis melo var. makuwa]4.5e-1858.1Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAVVEIELPMRDSLPTSAESSSSSSCTWVELYIESV-----CYFPNRVMSRLHPMFNDSA
        PR NR SLQT +L KT             PL TLSVLRDNDAVVEIEL + ++LPTSAESS S+S TW+ELY ESV     CYF N+V+SRLH MF  S 
Subjt:  PRGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAVVEIELPMRDSLPTSAESSSSSSCTWVELYIESV-----CYFPNRVMSRLHPMFNDSA

Query:  GSTDV
        G T +
Subjt:  GSTDV

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.4e-1959.62Show/hide
Query:  RGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAVVEIELPMRDSLPTSAESSSSSSCTWVELYIESV-----CYFPNRVMSRLHPMFNDSAG
        RGNRSSLQ+ +L  T             PL TLSVLRDNDAVVEIELP+ D+LPTSAESS S+S TW+ELY ESV     CYF N+VMSRLH +F+   G
Subjt:  RGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAVVEIELPMRDSLPTSAESSSSSSCTWVELYIESV-----CYFPNRVMSRLHPMFNDSAG

Query:  STDV
        ST +
Subjt:  STDV

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.9e-2250.34Show/hide
Query:  LFGLSYTGRTKRPRGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAVVEIELPMRDSLPTSAESSSSSSCTWVEL-----YIESVCYFPNRV
        LFGL Y   TKRPRGNR+SLQT +L KT              L TLSVLRDNDAVVEIELP+ D+LPTSAESS S+S TW+EL     ++E   YF N+V
Subjt:  LFGLSYTGRTKRPRGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAVVEIELPMRDSLPTSAESSSSSSCTWVEL-----YIESVCYFPNRV

Query:  MSRLHPMFNDSAGSTDV----ESVQIELAEYDPSIVESESRVMPPHTSR
        MS LH +FN S GST +        +    +  +       VMPP TSR
Subjt:  MSRLHPMFNDSAGSTDV----ESVQIELAEYDPSIVESESRVMPPHTSR

A0A5A7UGD0 Uncharacterized protein1.2e-1954.76Show/hide
Query:  LFGLSYTGRTKRPRGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAV-----------VEIELPMRDSLPTSAESSSSSSCTWVELYIESV-
        L GLSY   T RPRGNR SLQT KL KT              L TLSVLRDNDAV           VEIELPM D+LPT AES  S+S TW+ELY ESV 
Subjt:  LFGLSYTGRTKRPRGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAV-----------VEIELPMRDSLPTSAESSSSSSCTWVELYIESV-

Query:  ----CYFPNRVMSRLHPMFNDSAGST
            CY  N+VMS LH +FN S G T
Subjt:  ----CYFPNRVMSRLHPMFNDSAGST

A0A5A7V9N3 Reverse transcriptase6.8e-2059.62Show/hide
Query:  RGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAVVEIELPMRDSLPTSAESSSSSSCTWVELYIESV-----CYFPNRVMSRLHPMFNDSAG
        RGNRSSLQ+ +L  T             PL TLSVLRDNDAVVEIELP+ D+LPTSAESS S+S TW+ELY ESV     CYF N+VMSRLH +F+   G
Subjt:  RGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAVVEIELPMRDSLPTSAESSSSSSCTWVELYIESV-----CYFPNRVMSRLHPMFNDSAG

Query:  STDV
        ST +
Subjt:  STDV

A0A5D3BRI2 Uncharacterized protein2.2e-1858.1Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAVVEIELPMRDSLPTSAESSSSSSCTWVELYIESV-----CYFPNRVMSRLHPMFNDSA
        PR NR SLQT +L KT             PL TLSVLRDNDAVVEIEL + ++LPTSAESS S+S TW+ELY ESV     CYF N+V+SRLH MF  S 
Subjt:  PRGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAVVEIELPMRDSLPTSAESSSSSSCTWVELYIESV-----CYFPNRVMSRLHPMFNDSA

Query:  GSTDV
        G T +
Subjt:  GSTDV

A0A5D3DSY7 Putative Retrotransposon protein6.8e-2059.62Show/hide
Query:  RGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAVVEIELPMRDSLPTSAESSSSSSCTWVELYIESV-----CYFPNRVMSRLHPMFNDSAG
        RGNRSSLQ+ +L  T             PL TLSVLRDNDAVVEIELP+ D+LPTSAESS S+S TW+ELY ESV     CYF N+VMSRLH +F+   G
Subjt:  RGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAVVEIELPMRDSLPTSAESSSSSSCTWVELYIESV-----CYFPNRVMSRLHPMFNDSAG

Query:  STDV
        ST +
Subjt:  STDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAATCTGGGTTCAACCTGCCTATCTCTGGTTTTTTATTCGGTTTGAGCTACACAGGAAGAACTAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAA
ACTAGCTAAGACACCCGAGGCTATATGGTACTGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTTCGTGACAACGATGCTGTTGTAGAGATCGAGCTCC
CGATGCGTGATTCACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCTGTACGTGGGTGGAGTTGTACATTGAGTCTGTCTGTTATTTTCCAAACCGAGTTATGTCA
CGGCTACACCCCATGTTCAACGATTCAGCAGGGTCAACAGACGTTGAGTCAGTTCAGATAGAACTAGCGGAGTACGATCCAAGTATTGTTGAGAGTGAGTCCAGAGTCAT
GCCACCACATACTAGTAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAATCTGGGTTCAACCTGCCTATCTCTGGTTTTTTATTCGGTTTGAGCTACACAGGAAGAACTAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAA
ACTAGCTAAGACACCCGAGGCTATATGGTACTGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTTCGTGACAACGATGCTGTTGTAGAGATCGAGCTCC
CGATGCGTGATTCACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCTGTACGTGGGTGGAGTTGTACATTGAGTCTGTCTGTTATTTTCCAAACCGAGTTATGTCA
CGGCTACACCCCATGTTCAACGATTCAGCAGGGTCAACAGACGTTGAGTCAGTTCAGATAGAACTAGCGGAGTACGATCCAAGTATTGTTGAGAGTGAGTCCAGAGTCAT
GCCACCACATACTAGTAGATAA
Protein sequenceShow/hide protein sequence
MAESGFNLPISGFLFGLSYTGRTKRPRGNRSSLQTRKLAKTPEAIWYCVHTGYIPLLTLSVLRDNDAVVEIELPMRDSLPTSAESSSSSSCTWVELYIESVCYFPNRVMS
RLHPMFNDSAGSTDVESVQIELAEYDPSIVESESRVMPPHTSR