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Spg018742 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018742
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Genome locationscaffold3:19594440..19596868
RNA-Seq ExpressionSpg018742
SyntenySpg018742
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041195.1 hypothetical protein E6C27_scaffold128G001430 [Cucumis melo var. makuwa]1.6e-2452.74Show/hide
Query:  MSADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEKRNAEFLNDKSKLLAALAQT
        MSADQYAMDL FT VTRS++RS   Q GS TESSTPPRPSANL+RPS G VQMRPP SP +   SSTP P++YSQAVT  KR  E + + SK        
Subjt:  MSADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEKRNAEFLNDKSKLLAALAQT

Query:  TFDADFQRILQMETSSRSESPASSARGEENEPDYELDDPCLDSQPM
                     +SS S S +     E+ +P+Y+LDDP L+S+PM
Subjt:  TFDADFQRILQMETSSRSESPASSARGEENEPDYELDDPCLDSQPM

KAA0049709.1 hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa]9.3e-3363.27Show/hide
Query:  MSADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEKRNAEFLNDKSKLLAALAQT
        MSADQYAMDLGFT VTRSR+RS   + GS TESSTPP+PS NL+RPSGG+VQMR PVSP +   SSTP P++YSQAVT +KR        SKLLAALAQ 
Subjt:  MSADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEKRNAEFLNDKSKLLAALAQT

Query:  TFDADFQRILQ--METSSRSESPASSARGEENEPD--YELDDPCLDS
        T DADFQR+L   +  SS S+SP+SS + +E + D  Y+LDDP LDS
Subjt:  TFDADFQRILQ--METSSRSESPASSARGEENEPD--YELDDPCLDS

KAA0066384.1 hypothetical protein E6C27_scaffold21G004590 [Cucumis melo var. makuwa]1.0e-2351.75Show/hide
Query:  ADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEKRNAEFLNDKSKLLAALAQTTF
        ADQYAM++GFT VTRSR+RS   + GS+TES+TPPRPS NL+ PS G+VQMRPP SP +   SSTPS ++YSQAVT +KR       KS     +    +
Subjt:  ADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEKRNAEFLNDKSKLLAALAQTTF

Query:  DADFQRILQMETSSRSESPASSARGEEN--EPDYELDDPCLDS
        D   +   Q+  SS S+SP+SS + +E   +P+Y+LDDP LDS
Subjt:  DADFQRILQMETSSRSESPASSARGEEN--EPDYELDDPCLDS

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]3.0e-2344.68Show/hide
Query:  MSADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEK-------------------
        MS DQYAMDLG+T V +SR++S G    S  ESSTPPRPS NL+ P G ++QMR   SP +   SST  P++YSQAVT +K                   
Subjt:  MSADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEK-------------------

Query:  --------------------RNAEFLNDKSKLLAALAQTTFDADFQRILQ--METSSRSESPASSARGEENEPD--YELDDPCLDSQP
                            +NA+FLNDK K LAAL Q T DADFQR+L   + TSS S+   S  + +E + D  Y+LDDP LDSQP
Subjt:  --------------------RNAEFLNDKSKLLAALAQTTFDADFQRILQ--METSSRSESPASSARGEENEPD--YELDDPCLDSQP

TYK02422.1 hypothetical protein E5676_scaffold1738G00210 [Cucumis melo var. makuwa]8.4e-2654.11Show/hide
Query:  MSADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEKRNAEFLNDKSKLLAALAQT
        MSADQYAMDLGFT VTRSR+RS   Q GS TESSTPPRPSANL+RPS G VQMRPP SP +   SSTP P++YSQAVT   R  E + + SK +      
Subjt:  MSADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEKRNAEFLNDKSKLLAALAQT

Query:  TFDADFQRILQMETSSRSESPASSARGEENEPDYELDDPCLDSQPM
                     +SS S S +     E+ +P+Y+LDDP LDS+PM
Subjt:  TFDADFQRILQMETSSRSESPASSARGEENEPDYELDDPCLDSQPM

TrEMBL top hitse value%identityAlignment
A0A5A7TIF4 Uncharacterized protein7.7e-2552.74Show/hide
Query:  MSADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEKRNAEFLNDKSKLLAALAQT
        MSADQYAMDL FT VTRS++RS   Q GS TESSTPPRPSANL+RPS G VQMRPP SP +   SSTP P++YSQAVT  KR  E + + SK        
Subjt:  MSADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEKRNAEFLNDKSKLLAALAQT

Query:  TFDADFQRILQMETSSRSESPASSARGEENEPDYELDDPCLDSQPM
                     +SS S S +     E+ +P+Y+LDDP L+S+PM
Subjt:  TFDADFQRILQMETSSRSESPASSARGEENEPDYELDDPCLDSQPM

A0A5A7U8A0 Uncharacterized protein4.5e-3363.27Show/hide
Query:  MSADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEKRNAEFLNDKSKLLAALAQT
        MSADQYAMDLGFT VTRSR+RS   + GS TESSTPP+PS NL+RPSGG+VQMR PVSP +   SSTP P++YSQAVT +KR        SKLLAALAQ 
Subjt:  MSADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEKRNAEFLNDKSKLLAALAQT

Query:  TFDADFQRILQ--METSSRSESPASSARGEENEPD--YELDDPCLDS
        T DADFQR+L   +  SS S+SP+SS + +E + D  Y+LDDP LDS
Subjt:  TFDADFQRILQ--METSSRSESPASSARGEENEPD--YELDDPCLDS

A0A5D3BI61 Uncharacterized protein1.5e-2344.68Show/hide
Query:  MSADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEK-------------------
        MS DQYAMDLG+T V +SR++S G    S  ESSTPPRPS NL+ P G ++QMR   SP +   SST  P++YSQAVT +K                   
Subjt:  MSADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEK-------------------

Query:  --------------------RNAEFLNDKSKLLAALAQTTFDADFQRILQ--METSSRSESPASSARGEENEPD--YELDDPCLDSQP
                            +NA+FLNDK K LAAL Q T DADFQR+L   + TSS S+   S  + +E + D  Y+LDDP LDSQP
Subjt:  --------------------RNAEFLNDKSKLLAALAQTTFDADFQRILQ--METSSRSESPASSARGEENEPD--YELDDPCLDSQP

A0A5D3BPD3 Uncharacterized protein5.0e-2451.75Show/hide
Query:  ADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEKRNAEFLNDKSKLLAALAQTTF
        ADQYAM++GFT VTRSR+RS   + GS+TES+TPPRPS NL+ PS G+VQMRPP SP +   SSTPS ++YSQAVT +KR       KS     +    +
Subjt:  ADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEKRNAEFLNDKSKLLAALAQTTF

Query:  DADFQRILQMETSSRSESPASSARGEEN--EPDYELDDPCLDS
        D   +   Q+  SS S+SP+SS + +E   +P+Y+LDDP LDS
Subjt:  DADFQRILQMETSSRSESPASSARGEEN--EPDYELDDPCLDS

A0A5D3BUE2 Uncharacterized protein4.1e-2654.11Show/hide
Query:  MSADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEKRNAEFLNDKSKLLAALAQT
        MSADQYAMDLGFT VTRSR+RS   Q GS TESSTPPRPSANL+RPS G VQMRPP SP +   SSTP P++YSQAVT   R  E + + SK +      
Subjt:  MSADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEKRNAEFLNDKSKLLAALAQT

Query:  TFDADFQRILQMETSSRSESPASSARGEENEPDYELDDPCLDSQPM
                     +SS S S +     E+ +P+Y+LDDP LDS+PM
Subjt:  TFDADFQRILQMETSSRSESPASSARGEENEPDYELDDPCLDSQPM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGCTGATCAATATGCTATGGACCTCGGGTTTACTCCGGTAACCCGTTCCAGAGCAAGATCCGTCGGTACACAACCCGGATCGATCACGGAGTCATCTACTCCACC
TAGGCCTTCGGCCAATTTAGTCCGTCCTTCTGGCGGAATTGTTCAAATGAGACCTCCTGTCTCACCTGATACAAGGATAGGGTCATCAACCCCATCACCCTCTTCATATT
CTCAAGCGGTTACTCTTGAAAAGAGGAATGCCGAATTCCTAAATGATAAATCCAAGCTTCTGGCAGCTCTTGCTCAAACGACATTTGATGCAGACTTCCAGAGGATTCTT
CAAATGGAAACTTCTTCGAGAAGTGAATCTCCTGCTTCTTCTGCAAGAGGAGAAGAAAACGAACCAGACTACGAACTGGACGATCCATGCCTCGACTCACAACCTATGTC
GTATGACGCTTTGAAGCGCAGTACAGCTGTTGGTAAATCTACCTTGCCTTCTTGCCCAAAAAGTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTGCTGATCAATATGCTATGGACCTCGGGTTTACTCCGGTAACCCGTTCCAGAGCAAGATCCGTCGGTACACAACCCGGATCGATCACGGAGTCATCTACTCCACC
TAGGCCTTCGGCCAATTTAGTCCGTCCTTCTGGCGGAATTGTTCAAATGAGACCTCCTGTCTCACCTGATACAAGGATAGGGTCATCAACCCCATCACCCTCTTCATATT
CTCAAGCGGTTACTCTTGAAAAGAGGAATGCCGAATTCCTAAATGATAAATCCAAGCTTCTGGCAGCTCTTGCTCAAACGACATTTGATGCAGACTTCCAGAGGATTCTT
CAAATGGAAACTTCTTCGAGAAGTGAATCTCCTGCTTCTTCTGCAAGAGGAGAAGAAAACGAACCAGACTACGAACTGGACGATCCATGCCTCGACTCACAACCTATGTC
GTATGACGCTTTGAAGCGCAGTACAGCTGTTGGTAAATCTACCTTGCCTTCTTGCCCAAAAAGTGATTAG
Protein sequenceShow/hide protein sequence
MSADQYAMDLGFTPVTRSRARSVGTQPGSITESSTPPRPSANLVRPSGGIVQMRPPVSPDTRIGSSTPSPSSYSQAVTLEKRNAEFLNDKSKLLAALAQTTFDADFQRIL
QMETSSRSESPASSARGEENEPDYELDDPCLDSQPMSYDALKRSTAVGKSTLPSCPKSD