CuGenDBv2

Gene ID	Spg018745
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Genome location	scaffold3:4445621..4452302
RNA-Seq Expression	Spg018745
Synteny	Spg018745
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025376.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.1e-18

51.59

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Query:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG
        +  N+ +Q+ SVFD IK  TTR SV QRL  ++ E+E Q  T   TR S F RLS+STSKK D P  S FDRL+ TNDQ + ++KS + +   E ND++ 
Subjt:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG

Query:  FSSTVPSRMKRKPFVLINTEGLQTPK
          S VPSRMK+K FV INTEG  T K
Subjt:  FSSTVPSRMKRKPFVLINTEGLQTPK

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.5e-18

52.38

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Query:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG
        D  N+  Q+ SVFD IK  TTR SV QRL  ++ E+E Q  TS   R S F RLS+STSKK   P  S FDRL+ TNDQ + ++KSL+ +   E ND++ 
Subjt:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG

Query:  FSSTVPSRMKRKPFVLINTEGLQTPK
          S VPSRMKRK  V INTEG  T K
Subjt:  FSSTVPSRMKRKPFVLINTEGLQTPK

KAA0046209.1 gag protease polyprotein [Cucumis melo var. makuwa]

1.5e-18

52.38

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Query:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG
        +  N+ +Q+ SVFD IK  TTR SV QRL  +  E+E Q  T   TR S F RLS+STSKK D P  S FDRL+ TNDQ + ++KS + +   E ND++ 
Subjt:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG

Query:  FSSTVPSRMKRKPFVLINTEGLQTPK
          S VPSRMKRK FV INTEG  T K
Subjt:  FSSTVPSRMKRKPFVLINTEGLQTPK

KAA0061611.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.1e-18

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Query:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG
        +  N+ +Q+ SVFD IK  TTR SV QRL  ++ E+E Q  T   TR S F RLS+STSKK D P  SVFDRL+ T+DQ + ++KSL+ +   E ND++ 
Subjt:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG

Query:  FSSTVPSRMKRKPFVLINTEGLQTP
          S VPSRMKRK  V INTEG  +P
Subjt:  FSSTVPSRMKRKPFVLINTEGLQTP

TYK00108.1 retrotransposon gag protein [Cucumis melo var. makuwa]

2.3e-19

52.38

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Query:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG
        D  N+  Q+ SVFD IK  TTR SV QRL  ++ E++ Q  TS  TR S F RLS+STSKK D P  S FDR++  NDQ + ++KSL+ +   E ND++ 
Subjt:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG

Query:  FSSTVPSRMKRKPFVLINTEGLQTPK
          S VPSRMKRK FV INTEG  T K
Subjt:  FSSTVPSRMKRKPFVLINTEGLQTPK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SHQ6 Retrotransposon gag protein

5.5e-19

51.59

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Query:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG
        +  N+ +Q+ SVFD IK  TTR SV QRL  ++ E+E Q  T   TR S F RLS+STSKK D P  S FDRL+ TNDQ + ++KS + +   E ND++ 
Subjt:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG

Query:  FSSTVPSRMKRKPFVLINTEGLQTPK
          S VPSRMK+K FV INTEG  T K
Subjt:  FSSTVPSRMKRKPFVLINTEGLQTPK

A0A5A7TQ06 Retrotransposon gag protein

7.2e-19

52.38

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Query:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG
        D  N+  Q+ SVFD IK  TTR SV QRL  ++ E+E Q  TS   R S F RLS+STSKK   P  S FDRL+ TNDQ + ++KSL+ +   E ND++ 
Subjt:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG

Query:  FSSTVPSRMKRKPFVLINTEGLQTPK
          S VPSRMKRK  V INTEG  T K
Subjt:  FSSTVPSRMKRKPFVLINTEGLQTPK

A0A5A7TY80 Gag protease polyprotein

7.2e-19

52.38

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Query:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG
        +  N+ +Q+ SVFD IK  TTR SV QRL  +  E+E Q  T   TR S F RLS+STSKK D P  S FDRL+ TNDQ + ++KS + +   E ND++ 
Subjt:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG

Query:  FSSTVPSRMKRKPFVLINTEGLQTPK
          S VPSRMKRK FV INTEG  T K
Subjt:  FSSTVPSRMKRKPFVLINTEGLQTPK

A0A5A7V7A0 Retrotransposon gag protein

5.5e-19

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Query:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG
        +  N+ +Q+ SVFD IK  TTR SV QRL  ++ E+E Q  T   TR S F RLS+STSKK D P  SVFDRL+ T+DQ + ++KSL+ +   E ND++ 
Subjt:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG

Query:  FSSTVPSRMKRKPFVLINTEGLQTP
          S VPSRMKRK  V INTEG  +P
Subjt:  FSSTVPSRMKRKPFVLINTEGLQTP

A0A5D3BLW3 Retrotransposon gag protein

1.1e-19

52.38

Show/hide

Query:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG
        D  N+  Q+ SVFD IK  TTR SV QRL  ++ E++ Q  TS  TR S F RLS+STSKK D P  S FDR++  NDQ + ++KSL+ +   E ND++ 
Subjt:  DKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNG

Query:  FSSTVPSRMKRKPFVLINTEGLQTPK
          S VPSRMKRK FV INTEG  T K
Subjt:  FSSTVPSRMKRKPFVLINTEGLQTPK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGTGATCCAGAAGATAAAAAGAACGATGATAGCCAGAAAATCTCTGTCTTTGATCTCATTAAAGCGCCGACTACTCGTCTTTCAGTTCATCAGCGGCTGAAATATTC
ATCTTCGGAAAAGGAAGGCCAGGGAAAAACTTCTGCTCCTACTCGACGTTCAGTGTTTCATCGTCTGAGTGTGTCTACATCGAAGAAAGTAGATGAACCTTTGAGATCCG
TGTTTGACCGCCTTCAAGCAACAAATGACCAATGCAAAGGAAAGTTGAAAAGTCTCGAAACACAAGAATCCGATGAAATGAATGACAACAATGGTTTTTCCAGTACTGTT
CCTTCGCGGATGAAGAGGAAGCCTTTCGTTCTCATAAATACGGAAGGACTTCAAACCCCAAAGGAAGTTAGTGAGGTGGGATCCACTTCCATAGGTTGTCTAGTGAGTCA
TGTGGCCGGTGATTCATTGGCACCCATTCATGAGCTTGATTCTTTCGATCTTGCTGAGGATGAGCATTTAGGGGTGAGTTGCATAGATAGTGGAGAAGAATTGGAGAGTT
GTAGCACCTTTCAAGAACATGTTTGTGAGGAAGAAAAACAAAATGAGCTTGCAGTGACAGAGGAAGTTCAGGAGGTAGAGTTTGAGGTTGAAAAGCCTTCGTCTGTTTTA
TCTTTTCCATCCTTTATAAAATACGATTGTTCCTTTTTCTATTCTTACGAGTCAGTCTTAGAGACAATGCATGCTTTAAGTTTGGGGGTGGAATAG

mRNA sequence

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Protein sequence

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MSDPEDKKNDDSQKISVFDLIKAPTTRLSVHQRLKYSSSEKEGQGKTSAPTRRSVFHRLSVSTSKKVDEPLRSVFDRLQATNDQCKGKLKSLETQESDEMNDNNGFSSTV
PSRMKRKPFVLINTEGLQTPKEVSEVGSTSIGCLVSHVAGDSLAPIHELDSFDLAEDEHLGVSCIDSGEELESCSTFQEHVCEEEKQNELAVTEEVQEVEFEVEKPSSVL
SFPSFIKYDCSFFYSYESVLETMHALSLGVE

Spg018745 (gene) of Sponge gourd (cylindrica) v1 genome