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Spg018749 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018749
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold3:19099380..19105286
RNA-Seq ExpressionSpg018749
SyntenySpg018749
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]1.6e-1847.26Show/hide
Query:  PGFLFCLS----YTEGIKRAAENLES-VLYMFGAFLERLV---GNPVFISSGQ-EEIGYILLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTF
        P  L+CLS    +T  ++ +   L+  VL +  + LE L    GN + + +G+ ++    LLLTL+VL DNDA+VEIELPV DTLP SAESS S+S S  
Subjt:  PGFLFCLS----YTEGIKRAAENLES-VLYMFGAFLERLV---GNPVFISSGQ-EEIGYILLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTF

Query:  QEGQRVSIEEDDVRWLHAIFRTKLAGGLGGGVTTWYQSQVAPWEMR
               + EDDV WLH +FR K AGG GGGVTTWYQ  + P   R
Subjt:  QEGQRVSIEEDDVRWLHAIFRTKLAGGLGGGVTTWYQSQVAPWEMR

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]3.7e-1559.38Show/hide
Query:  FLERLVGNPVFISSGQEEIGYIL-LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSIEEDDVRWLHAIFRTKLAGGLGGGVT
        +L R  GN   + +G+ +   I  L TLSVLRDNDAVVEIELPVPDTLPTSAES  S+S ST        +  DDV WLHA+FR K AGG GGGVT
Subjt:  FLERLVGNPVFISSGQEEIGYIL-LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSIEEDDVRWLHAIFRTKLAGGLGGGVT

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]4.0e-1752Show/hide
Query:  MFGAFLERLVGNPVFISSGQEEIGYIL------------------------LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSIEE
        MFGA L+ LV   VFISSG   I  ++                        L TLSVLRDNDAV EIELPVPDTL TSAESS S+S S         +  
Subjt:  MFGAFLERLVGNPVFISSGQEEIGYIL------------------------LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSIEE

Query:  DDVRWLHAIFRTKLAGGLGGGVTTW
        DDV WLHAIFR K+ GG GGGVTTW
Subjt:  DDVRWLHAIFRTKLAGGLGGGVTTW

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]3.0e-1767.09Show/hide
Query:  TLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSIEEDDVRWLHAIFRTKLAGGLGGGVTTWYQSQVAP
        TLSVL DNDAVVEIELPV DTLPTSAESS S+S S         +  DDV WLH++FR K A G GGGVTTWYQS+V P
Subjt:  TLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSIEEDDVRWLHAIFRTKLAGGLGGGVTTWYQSQVAP

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-1545.8Show/hide
Query:  GNPVFISSGQ-EEIGYILLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQRVSIEEDDVRWLH
        GN   + +G+ ++I    L TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SS+  +                          EG    +  DDV WLH
Subjt:  GNPVFISSGQ-EEIGYILLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQRVSIEEDDVRWLH

Query:  AIFRTKLAGGLGGGVTTWYQSQVAPWEMRHG
        AIFR K AGG GGGVT        P+E+  G
Subjt:  AIFRTKLAGGLGGGVTTWYQSQVAPWEMRHG

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein3.1e-1545.8Show/hide
Query:  GNPVFISSGQ-EEIGYILLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQRVSIEEDDVRWLH
        GN   + +G+ ++I    L TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SS+  +                          EG    +  DDV WLH
Subjt:  GNPVFISSGQ-EEIGYILLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQRVSIEEDDVRWLH

Query:  AIFRTKLAGGLGGGVTTWYQSQVAPWEMRHG
        AIFR K AGG GGGVT        P+E+  G
Subjt:  AIFRTKLAGGLGGGVTTWYQSQVAPWEMRHG

A0A5D3BAD1 Retrotrans_gag domain-containing protein1.8e-1559.38Show/hide
Query:  FLERLVGNPVFISSGQEEIGYIL-LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSIEEDDVRWLHAIFRTKLAGGLGGGVT
        +L R  GN   + +G+ +   I  L TLSVLRDNDAVVEIELPVPDTLPTSAES  S+S ST        +  DDV WLHA+FR K AGG GGGVT
Subjt:  FLERLVGNPVFISSGQEEIGYIL-LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSIEEDDVRWLHAIFRTKLAGGLGGGVT

A0A5D3BNX1 Zf-CCHC domain-containing protein1.9e-1752Show/hide
Query:  MFGAFLERLVGNPVFISSGQEEIGYIL------------------------LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSIEE
        MFGA L+ LV   VFISSG   I  ++                        L TLSVLRDNDAV EIELPVPDTL TSAESS S+S S         +  
Subjt:  MFGAFLERLVGNPVFISSGQEEIGYIL------------------------LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSIEE

Query:  DDVRWLHAIFRTKLAGGLGGGVTTW
        DDV WLHAIFR K+ GG GGGVTTW
Subjt:  DDVRWLHAIFRTKLAGGLGGGVTTW

A0A5D3BSA6 Retrotrans_gag domain-containing protein7.8e-1947.26Show/hide
Query:  PGFLFCLS----YTEGIKRAAENLES-VLYMFGAFLERLV---GNPVFISSGQ-EEIGYILLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTF
        P  L+CLS    +T  ++ +   L+  VL +  + LE L    GN + + +G+ ++    LLLTL+VL DNDA+VEIELPV DTLP SAESS S+S S  
Subjt:  PGFLFCLS----YTEGIKRAAENLES-VLYMFGAFLERLV---GNPVFISSGQ-EEIGYILLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTF

Query:  QEGQRVSIEEDDVRWLHAIFRTKLAGGLGGGVTTWYQSQVAPWEMR
               + EDDV WLH +FR K AGG GGGVTTWYQ  + P   R
Subjt:  QEGQRVSIEEDDVRWLHAIFRTKLAGGLGGGVTTWYQSQVAPWEMR

A0A5D3CU23 Retrotrans_gag domain-containing protein1.5e-1767.09Show/hide
Query:  TLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSIEEDDVRWLHAIFRTKLAGGLGGGVTTWYQSQVAP
        TLSVL DNDAVVEIELPV DTLPTSAESS S+S S         +  DDV WLH++FR K A G GGGVTTWYQS+V P
Subjt:  TLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSIEEDDVRWLHAIFRTKLAGGLGGGVTTWYQSQVAP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTTGTTCGTTGAAGAATTCAGAGTCGTCACCGGAGTGGTCGGTTGGATGAGGACACGTGTCAAGCAACAGTTGGGCGTTCGGTTGGAGCGTGCGTCAGGCAATTC
GCTGGTTCAAGCTGATTTGGAGCCGGTTCAGCTTGGTTCAAGCTCATTTGAAGCTGGTTCATCATGGTTCAGCACAATTTTTGCTGGTTCGAAGAGTTTGGATGCGGCTA
GAGTTACCTCCTACATGGGAACTGACCCGATCCATGCTCGGCTTCGTGTTGCCTTCGGCGCGGCCTCCCTTCGGAAAGTGTTTGCATGGGTCCATAACAAGGTGAATGAG
GAGAATGTCTATAGAAAAGCTCAAGCAAAACCAGCCATTGCAGAATCTGTGTTCAACCTGTCAACCCCTGGTTTTTTATTCTGTTTGAGCTACACAGAAGGAATTAAGAG
GGCAGCAGAGAACCTCGAATCTGTGTTGTATATGTTCGGGGCATTTCTGGAAAGATTGGTTGGGAATCCCGTTTTTATTTCTTCCGGCCAAGAGGAAATAGGATATATTC
TGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACATCTGCTGAAAGTTCCAGGTCAAGCTCCAGT
TCTACATTTCAGGAGGGTCAACGGGTATCAATAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAAC
TTGGTATCAGAGCCAGGTAGCTCCATGGGAAATGAGACATGGTAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGTTGTTCGTTGAAGAATTCAGAGTCGTCACCGGAGTGGTCGGTTGGATGAGGACACGTGTCAAGCAACAGTTGGGCGTTCGGTTGGAGCGTGCGTCAGGCAATTC
GCTGGTTCAAGCTGATTTGGAGCCGGTTCAGCTTGGTTCAAGCTCATTTGAAGCTGGTTCATCATGGTTCAGCACAATTTTTGCTGGTTCGAAGAGTTTGGATGCGGCTA
GAGTTACCTCCTACATGGGAACTGACCCGATCCATGCTCGGCTTCGTGTTGCCTTCGGCGCGGCCTCCCTTCGGAAAGTGTTTGCATGGGTCCATAACAAGGTGAATGAG
GAGAATGTCTATAGAAAAGCTCAAGCAAAACCAGCCATTGCAGAATCTGTGTTCAACCTGTCAACCCCTGGTTTTTTATTCTGTTTGAGCTACACAGAAGGAATTAAGAG
GGCAGCAGAGAACCTCGAATCTGTGTTGTATATGTTCGGGGCATTTCTGGAAAGATTGGTTGGGAATCCCGTTTTTATTTCTTCCGGCCAAGAGGAAATAGGATATATTC
TGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACATCTGCTGAAAGTTCCAGGTCAAGCTCCAGT
TCTACATTTCAGGAGGGTCAACGGGTATCAATAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAAC
TTGGTATCAGAGCCAGGTAGCTCCATGGGAAATGAGACATGGTAGTTAG
Protein sequenceShow/hide protein sequence
MVLFVEEFRVVTGVVGWMRTRVKQQLGVRLERASGNSLVQADLEPVQLGSSSFEAGSSWFSTIFAGSKSLDAARVTSYMGTDPIHARLRVAFGAASLRKVFAWVHNKVNE
ENVYRKAQAKPAIAESVFNLSTPGFLFCLSYTEGIKRAAENLESVLYMFGAFLERLVGNPVFISSGQEEIGYILLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS
STFQEGQRVSIEEDDVRWLHAIFRTKLAGGLGGGVTTWYQSQVAPWEMRHGS