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Spg018750 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018750
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionStructure-specific endonuclease subunit slx1
Genome locationscaffold3:13589993..13593211
RNA-Seq ExpressionSpg018750
SyntenySpg018750
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MQL90135.1 hypothetical protein [Colocasia esculenta]1.5e-0536.03Show/hide
Query:  DKSDKNKRS------RSKLSFNHCAGTKSFLSHREKKEQMVALSQEQA-SSSTPLSDEDIMATVLGTRSSYVKGMGYGPKPPHPQKKASYSQDQREENAR
        DK    KRS      RSKL   H  GTK+ ++H+   E+MV + Q+    S TP+ ++DI A VLG  S Y++G G+GPKPP   +    SQ    E   
Subjt:  DKSDKNKRS------RSKLSFNHCAGTKSFLSHREKKEQMVALSQEQA-SSSTPLSDEDIMATVLGTRSSYVKGMGYGPKPPHPQKKASYSQDQREENAR

Query:  MEARMKEQLDQAMEMQRDEYERRFRQMGELMERFTG
              +QL+Q +   RD+ E + R++  LM    G
Subjt:  MEARMKEQLDQAMEMQRDEYERRFRQMGELMERFTG

XP_020260850.1 uncharacterized protein LOC109837148 [Asparagus officinalis]3.9e-0934.27Show/hide
Query:  KSDKNKRSRSKLSFNHCAGTKSFLSHREKKEQMVALSQE--QASSSTPLSDEDIMATVLGTRSSYVKGMGYGPKPPHPQKKASYSQDQREENARMEARMK
        +S+KN  +RSKL+++H AG+KSF+SH+E+ +QM+ +  +  Q   +  ++DE+I A VL  +S Y+KG G+GP+PP  +   S   +  E+N  ++ +++
Subjt:  KSDKNKRSRSKLSFNHCAGTKSFLSHREKKEQMVALSQE--QASSSTPLSDEDIMATVLGTRSSYVKGMGYGPKPPHPQKKASYSQDQREENARMEARMK

Query:  E--QL----DQAMEMQRD---EYERRFRQMGELMERFTGAHPS
        E  QL     Q ++ Q +     E + ++  E M  F+  HPS
Subjt:  E--QL----DQAMEMQRD---EYERRFRQMGELMERFTGAHPS

XP_022143616.1 uncharacterized protein LOC111013476 [Momordica charantia]2.6e-1341.89Show/hide
Query:  DKSDKNKRSRSKLSFNHCAGTKSFLSHREKKEQMVALSQEQASSSTPLSDEDIMATVLGTRSSYVKGMGYGPKPPHPQKKASYSQDQREENARMEARM--
        +KS KNK +RSKL FNH  G K F  HRE  E+M+ L    AS     ++E+IM TVLG RS+YV GMGYGPKP   +  +S   D+  E+  +EAR+  
Subjt:  DKSDKNKRSRSKLSFNHCAGTKSFLSHREKKEQMVALSQEQASSSTPLSDEDIMATVLGTRSSYVKGMGYGPKPPHPQKKASYSQDQREENARMEARM--

Query:  ---------KEQLDQAMEMQRDEYERRFRQMGELMERFTGAHPSVSKD
                 +EQ+ +A+E Q  E+ R+  +M + M    G   S SKD
Subjt:  ---------KEQLDQAMEMQRDEYERRFRQMGELMERFTGAHPSVSKD

XP_022148911.1 uncharacterized protein LOC111017461 [Momordica charantia]1.3e-1241.79Show/hide
Query:  DKSDKNKRSRSKLSFNHCAGTKSFLSHREKKEQMVALSQEQASSSTPLSDEDIMATVLGTRSSYVKGMGYGPKPPHPQKKASYSQDQREENARMEARM--
        +KS KNK +RSKL FNH  G K F  HRE  E+M+ L    AS     ++E+IM TVLG RS+YV GMGYGPKP   +  +S   D+  E+  +EAR+  
Subjt:  DKSDKNKRSRSKLSFNHCAGTKSFLSHREKKEQMVALSQEQASSSTPLSDEDIMATVLGTRSSYVKGMGYGPKPPHPQKKASYSQDQREENARMEARM--

Query:  ---------KEQLDQAMEMQRDEYERRFRQMGEL
                 +EQ+ +A+E Q  E+ R+  +M ++
Subjt:  ---------KEQLDQAMEMQRDEYERRFRQMGEL

XP_022153681.1 uncharacterized protein LOC111021138 [Momordica charantia]1.7e-0952.7Show/hide
Query:  DKSDKNKRSRSKLSFNHCAGTKSFLSHREKKEQMVALSQEQASSSTPLSDEDIMATVLGTRSSYVKGMGYGPKP
        +KS KNK + SKL FNH    K F  HRE  E+M+ L    AS     ++E+IM TVLG RS+Y+ GMGYGPKP
Subjt:  DKSDKNKRSRSKLSFNHCAGTKSFLSHREKKEQMVALSQEQASSSTPLSDEDIMATVLGTRSSYVKGMGYGPKP

TrEMBL top hitse value%identityAlignment
A0A314YX60 Uncharacterized protein2.8e-0528.48Show/hide
Query:  TTKRSDKSDKNKRSRSKLSFNHCAGTKSFLSH---------------------------------REKKEQMVALSQEQASSST-PLSDEDIMATVLGTR
        T K  ++S +N ++RS L++NH  G+KSF++H                                 + K E+M+A+  E ++  T  ++D++I+A VLG +
Subjt:  TTKRSDKSDKNKRSRSKLSFNHCAGTKSFLSH---------------------------------REKKEQMVALSQEQASSST-PLSDEDIMATVLGTR

Query:  SSYVKGMGYGPKPPHPQKKASYSQDQREENARMEARMKEQLDQAMEMQR--DEYERRFRQMGELM
        S Y+KG G+GP+P     KA  SQ  +E    ++++ +E LD+  E+ +  +E +++F +  E M
Subjt:  SSYVKGMGYGPKPPHPQKKASYSQDQREENARMEARMKEQLDQAMEMQR--DEYERRFRQMGELM

A0A6A1WGC8 Uncharacterized protein2.2e-0527.1Show/hide
Query:  ASSHSSRVRGVSRGVGLDRIIEATGDRVSISWTP-EQGNSSFTRFVIDIKIG------------------------------DQDCTDTTKRSDK-SDKN
        ++S S R RG +RGV L++ + +   ++S+     E G  S T  ++  KIG                              DQ   D T+  DK S++N
Subjt:  ASSHSSRVRGVSRGVGLDRIIEATGDRVSISWTP-EQGNSSFTRFVIDIKIG------------------------------DQDCTDTTKRSDK-SDKN

Query:  KRSRSKLSFNHCAGTKSFLSHREKKEQMVALSQEQASSSTPLSDEDIMATVLGTRSSYVKGMGYGPKPPHPQKKASYSQDQREENARMEARMKEQLDQAM
        K++RSKL+ NH AG++SF   R   E+M A  ++        ++ ++ + +LG +S YV+G+G   KPP      + S D + + A+    + E +  A 
Subjt:  KRSRSKLSFNHCAGTKSFLSHREKKEQMVALSQEQASSSTPLSDEDIMATVLGTRSSYVKGMGYGPKPPHPQKKASYSQDQREENARMEARMKEQLDQAM

Query:  EMQRDEYERRFRQM
        E    E+ ++  +M
Subjt:  EMQRDEYERRFRQM

A0A6J1CQT5 uncharacterized protein LOC1110134761.3e-1341.89Show/hide
Query:  DKSDKNKRSRSKLSFNHCAGTKSFLSHREKKEQMVALSQEQASSSTPLSDEDIMATVLGTRSSYVKGMGYGPKPPHPQKKASYSQDQREENARMEARM--
        +KS KNK +RSKL FNH  G K F  HRE  E+M+ L    AS     ++E+IM TVLG RS+YV GMGYGPKP   +  +S   D+  E+  +EAR+  
Subjt:  DKSDKNKRSRSKLSFNHCAGTKSFLSHREKKEQMVALSQEQASSSTPLSDEDIMATVLGTRSSYVKGMGYGPKPPHPQKKASYSQDQREENARMEARM--

Query:  ---------KEQLDQAMEMQRDEYERRFRQMGELMERFTGAHPSVSKD
                 +EQ+ +A+E Q  E+ R+  +M + M    G   S SKD
Subjt:  ---------KEQLDQAMEMQRDEYERRFRQMGELMERFTGAHPSVSKD

A0A6J1D6S9 uncharacterized protein LOC1110174616.2e-1341.79Show/hide
Query:  DKSDKNKRSRSKLSFNHCAGTKSFLSHREKKEQMVALSQEQASSSTPLSDEDIMATVLGTRSSYVKGMGYGPKPPHPQKKASYSQDQREENARMEARM--
        +KS KNK +RSKL FNH  G K F  HRE  E+M+ L    AS     ++E+IM TVLG RS+YV GMGYGPKP   +  +S   D+  E+  +EAR+  
Subjt:  DKSDKNKRSRSKLSFNHCAGTKSFLSHREKKEQMVALSQEQASSSTPLSDEDIMATVLGTRSSYVKGMGYGPKPPHPQKKASYSQDQREENARMEARM--

Query:  ---------KEQLDQAMEMQRDEYERRFRQMGEL
                 +EQ+ +A+E Q  E+ R+  +M ++
Subjt:  ---------KEQLDQAMEMQRDEYERRFRQMGEL

A0A6J1DLF1 uncharacterized protein LOC1110211388.4e-1052.7Show/hide
Query:  DKSDKNKRSRSKLSFNHCAGTKSFLSHREKKEQMVALSQEQASSSTPLSDEDIMATVLGTRSSYVKGMGYGPKP
        +KS KNK + SKL FNH    K F  HRE  E+M+ L    AS     ++E+IM TVLG RS+Y+ GMGYGPKP
Subjt:  DKSDKNKRSRSKLSFNHCAGTKSFLSHREKKEQMVALSQEQASSSTPLSDEDIMATVLGTRSSYVKGMGYGPKP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGAAGCACAGTTTCCGCCGTGGTTTAAAAATAAAGTGGAAGTCGATGAAGAAGATGGAGACGATGATGAAGAAGAAGAAGATGAAGATGAAGATGGGGAAGATGA
AGACAATGAGGAAGAAGATGAAGATGGAGATGGGGAAGATAATGATACAATTTTTTCAAATAACGAAGACAATACTGTAGACATGGATGAGGCATCCTCTCACAGTTCCC
GAGTTCGTGGCGTTTCCCGTGGGGTTGGTCTTGATAGGATTATTGAGGCCACTGGTGACAGAGTTTCTATTTCATGGACTCCAGAGCAAGGAAATTCATCCTTTACGAGA
TTCGTAATAGATATAAAGATTGGAGATCAAGATTGCACCGATACTACAAAAAGATCGGATAAGTCAGACAAAAATAAGCGGAGCAGAAGTAAACTCTCATTTAATCATTG
TGCTGGAACAAAATCATTTCTCTCTCATAGAGAAAAGAAGGAACAAATGGTGGCATTATCTCAAGAGCAAGCTAGCTCAAGTACACCTCTGAGCGATGAAGACATTATGG
CCACTGTTCTTGGAACGAGATCGTCCTATGTCAAAGGAATGGGATATGGACCTAAACCACCACATCCTCAGAAGAAAGCATCTTACTCACAGGATCAACGAGAAGAAAAT
GCAAGAATGGAAGCAAGGATGAAAGAACAACTAGATCAAGCCATGGAAATGCAGCGGGATGAATATGAAAGAAGGTTTCGACAAATGGGTGAACTTATGGAAAGATTCAC
TGGAGCACACCCATCAGTTAGTAAGGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATGAAGCACAGTTTCCGCCGTGGTTTAAAAATAAAGTGGAAGTCGATGAAGAAGATGGAGACGATGATGAAGAAGAAGAAGATGAAGATGAAGATGGGGAAGATGA
AGACAATGAGGAAGAAGATGAAGATGGAGATGGGGAAGATAATGATACAATTTTTTCAAATAACGAAGACAATACTGTAGACATGGATGAGGCATCCTCTCACAGTTCCC
GAGTTCGTGGCGTTTCCCGTGGGGTTGGTCTTGATAGGATTATTGAGGCCACTGGTGACAGAGTTTCTATTTCATGGACTCCAGAGCAAGGAAATTCATCCTTTACGAGA
TTCGTAATAGATATAAAGATTGGAGATCAAGATTGCACCGATACTACAAAAAGATCGGATAAGTCAGACAAAAATAAGCGGAGCAGAAGTAAACTCTCATTTAATCATTG
TGCTGGAACAAAATCATTTCTCTCTCATAGAGAAAAGAAGGAACAAATGGTGGCATTATCTCAAGAGCAAGCTAGCTCAAGTACACCTCTGAGCGATGAAGACATTATGG
CCACTGTTCTTGGAACGAGATCGTCCTATGTCAAAGGAATGGGATATGGACCTAAACCACCACATCCTCAGAAGAAAGCATCTTACTCACAGGATCAACGAGAAGAAAAT
GCAAGAATGGAAGCAAGGATGAAAGAACAACTAGATCAAGCCATGGAAATGCAGCGGGATGAATATGAAAGAAGGTTTCGACAAATGGGTGAACTTATGGAAAGATTCAC
TGGAGCACACCCATCAGTTAGTAAGGATTAA
Protein sequenceShow/hide protein sequence
MHEAQFPPWFKNKVEVDEEDGDDDEEEEDEDEDGEDEDNEEEDEDGDGEDNDTIFSNNEDNTVDMDEASSHSSRVRGVSRGVGLDRIIEATGDRVSISWTPEQGNSSFTR
FVIDIKIGDQDCTDTTKRSDKSDKNKRSRSKLSFNHCAGTKSFLSHREKKEQMVALSQEQASSSTPLSDEDIMATVLGTRSSYVKGMGYGPKPPHPQKKASYSQDQREEN
ARMEARMKEQLDQAMEMQRDEYERRFRQMGELMERFTGAHPSVSKD