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Spg018763 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018763
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSWIM-type domain-containing protein
Genome locationscaffold3:9587724..9593507
RNA-Seq ExpressionSpg018763
SyntenySpg018763
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN72555.1 hypothetical protein VITISV_015793 [Vitis vinifera]4.6e-1269.39Show/hide
Query:  YPNVELMRGNGRPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHR
        +PN  L+R  GRP SSRIRNEMDWREP +K RCG+C+QEGHN R CP+R
Subjt:  YPNVELMRGNGRPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHR

RVW52006.1 hypothetical protein CK203_068088 [Vitis vinifera]3.5e-1269.39Show/hide
Query:  YPNVELMRGNGRPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHR
        +PN  L+R  GRP SSRIRNEMDWREP +K RCG+C+QEGHN+R CP+R
Subjt:  YPNVELMRGNGRPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHR

RVW87805.1 hypothetical protein CK203_044024 [Vitis vinifera]1.0e-1170.83Show/hide
Query:  PNVELMRGNGRPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHR
        PN  L+R  GRP SSRIRNEMDWREP +K RCG+C+QEGHN R CP+R
Subjt:  PNVELMRGNGRPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHR

RVX19406.1 hypothetical protein CK203_008540 [Vitis vinifera]3.5e-1269.39Show/hide
Query:  YPNVELMRGNGRPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHR
        +PN  L+R  GRP SSRIRNEMDWREP +K RCG+C+QEGHN+R CP+R
Subjt:  YPNVELMRGNGRPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHR

XP_038877923.1 uncharacterized protein LOC120070133 [Benincasa hispida]1.3e-1431.53Show/hide
Query:  MNGNIVHGLNGIEYFVEPFVQFNVPRDIVYDQFIQWSCNGLSIDRTEGLEVIFRYGTIGFEGSTYYVPVPLRSEIDFRFMMSLALPLPNRVELFIPRQNI
        M+GNIV+G +GIEY  +P ++ N+ R   ++  I    +  SI+R + +EVIFRYG+     ST+++P+ LRS+ID +FMMS A   PNRVEL+I + ++
Subjt:  MNGNIVHGLNGIEYFVEPFVQFNVPRDIVYDQFIQWSCNGLSIDRTEGLEVIFRYGTIGFEGSTYYVPVPLRSEIDFRFMMSLALPLPNRVELFIPRQNI

Query:  VHIDPNR-PIEHVSEPNYTPEDEAEDDLNVDNVDEVGVDNLDGENVDTALVTNEDVGTEPDNESTEGPSDDDGEED---PQMYDEHEIPEFFTQLDMATI
              R  +E V   ++  EDE  D     N +EV +D                              DDD + D    Q Y  HE+PE FT++D+  +
Subjt:  VHIDPNR-PIEHVSEPNYTPEDEAEDDLNVDNVDEVGVDNLDGENVDTALVTNEDVGTEPDNESTEGPSDDDGEED---PQMYDEHEIPEFFTQLDMATI

Query:  NSLSNTGVEKEFSYPNVELMRG
         +  ++   ++ +  +  L++G
Subjt:  NSLSNTGVEKEFSYPNVELMRG

TrEMBL top hitse value%identityAlignment
A0A2N9GZ23 SWIM-type domain-containing protein1.1e-0856.86Show/hide
Query:  PNVELMRGNGRPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHRAAG
        P+  ++R  GRP S+RIRNEMDWRE   K RCG+C++EGHN+R CP+  +G
Subjt:  PNVELMRGNGRPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHRAAG

A0A438EWG2 SWIM-type domain-containing protein1.7e-1269.39Show/hide
Query:  YPNVELMRGNGRPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHR
        +PN  L+R  GRP SSRIRNEMDWREP +K RCG+C+QEGHN+R CP+R
Subjt:  YPNVELMRGNGRPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHR

A0A438HTP0 Uncharacterized protein4.9e-1270.83Show/hide
Query:  PNVELMRGNGRPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHR
        PN  L+R  GRP SSRIRNEMDWREP +K RCG+C+QEGHN R CP+R
Subjt:  PNVELMRGNGRPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHR

A0A438KDW5 SWIM-type domain-containing protein1.7e-1269.39Show/hide
Query:  YPNVELMRGNGRPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHR
        +PN  L+R  GRP SSRIRNEMDWREP +K RCG+C+QEGHN+R CP+R
Subjt:  YPNVELMRGNGRPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHR

A5BP71 PMD domain-containing protein2.2e-1269.39Show/hide
Query:  YPNVELMRGNGRPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHR
        +PN  L+R  GRP SSRIRNEMDWREP +K RCG+C+QEGHN R CP+R
Subjt:  YPNVELMRGNGRPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGGGAACATAGTGCACGGTCTGAATGGTATAGAATATTTCGTCGAACCATTTGTTCAGTTCAATGTTCCTCGTGATATTGTATATGACCAATTCATTCAATGGTC
ATGCAATGGATTGTCGATTGATAGAACTGAAGGGTTGGAAGTCATCTTTAGATATGGCACTATTGGGTTCGAAGGGTCTACTTATTATGTTCCTGTCCCGTTACGAAGTG
AGATTGACTTTAGGTTTATGATGAGCCTTGCTCTACCTCTTCCTAATAGAGTAGAACTCTTTATTCCTCGCCAAAACATCGTTCATATAGATCCAAATAGACCCATTGAA
CACGTATCTGAACCTAATTATACACCGGAGGATGAAGCTGAAGATGACTTGAATGTTGATAATGTTGATGAAGTGGGTGTGGATAATTTGGATGGGGAGAATGTAGACAC
TGCCCTAGTCACGAATGAAGACGTTGGAACAGAACCTGACAATGAAAGCACTGAAGGACCGTCTGATGATGATGGGGAGGAAGATCCTCAGATGTATGACGAGCACGAAA
TCCCAGAGTTTTTCACCCAACTGGACATGGCAACCATCAATTCACTTTCTAACACAGGTGTTGAAAAAGAATTCTCGTATCCTAACGTAGAGTTGATGAGAGGGAATGGT
CGACCATGCAGTTCTCGTATAAGAAACGAGATGGATTGGAGGGAGCCAATCATTAAAACACGATGTGGAGTATGTAGACAGGAAGGGCATAATCAAAGAAATTGTCCTCA
TCGTGCAGCTGGAAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGGATACGACCCGCTTTGTATATTGATACAAACGTAGTGATCCAACGCGTTCATGTAGTTG
ACATGCGAGTGAGGGATGACCTAGGCAACTTGGCCTTAATCCTAAGTGGATTATGGACTCCTGTCCATGAGGGATTGTCCTTTGATTTGTATGGGTTGTTCATTAGAGGA
GCACTGGTACTTAAGGATCAAGAGAATACCGGTGAATCCTTGGTGGTAGTGTTCATGGTGAGCTCCTTGCTGATTTTTCCAGATTCATCAAGTGTAGTTGGGCAAAAAGA
TCAAGAACGATCCTTACGAACGACGCTGGAAATCAGAAAAACAGAGTGTAGAACAGAGGAATCGTCGACTGCAGAGTTTACTAGAAAACTTCTCGGCCGAAATCTCGACC
GGGATCCCGACCGAGATCGAGACCGGGATCCCGACCGAGATCGAGACCGGGATCGTGACCGGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGGGAACATAGTGCACGGTCTGAATGGTATAGAATATTTCGTCGAACCATTTGTTCAGTTCAATGTTCCTCGTGATATTGTATATGACCAATTCATTCAATGGTC
ATGCAATGGATTGTCGATTGATAGAACTGAAGGGTTGGAAGTCATCTTTAGATATGGCACTATTGGGTTCGAAGGGTCTACTTATTATGTTCCTGTCCCGTTACGAAGTG
AGATTGACTTTAGGTTTATGATGAGCCTTGCTCTACCTCTTCCTAATAGAGTAGAACTCTTTATTCCTCGCCAAAACATCGTTCATATAGATCCAAATAGACCCATTGAA
CACGTATCTGAACCTAATTATACACCGGAGGATGAAGCTGAAGATGACTTGAATGTTGATAATGTTGATGAAGTGGGTGTGGATAATTTGGATGGGGAGAATGTAGACAC
TGCCCTAGTCACGAATGAAGACGTTGGAACAGAACCTGACAATGAAAGCACTGAAGGACCGTCTGATGATGATGGGGAGGAAGATCCTCAGATGTATGACGAGCACGAAA
TCCCAGAGTTTTTCACCCAACTGGACATGGCAACCATCAATTCACTTTCTAACACAGGTGTTGAAAAAGAATTCTCGTATCCTAACGTAGAGTTGATGAGAGGGAATGGT
CGACCATGCAGTTCTCGTATAAGAAACGAGATGGATTGGAGGGAGCCAATCATTAAAACACGATGTGGAGTATGTAGACAGGAAGGGCATAATCAAAGAAATTGTCCTCA
TCGTGCAGCTGGAAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGGATACGACCCGCTTTGTATATTGATACAAACGTAGTGATCCAACGCGTTCATGTAGTTG
ACATGCGAGTGAGGGATGACCTAGGCAACTTGGCCTTAATCCTAAGTGGATTATGGACTCCTGTCCATGAGGGATTGTCCTTTGATTTGTATGGGTTGTTCATTAGAGGA
GCACTGGTACTTAAGGATCAAGAGAATACCGGTGAATCCTTGGTGGTAGTGTTCATGGTGAGCTCCTTGCTGATTTTTCCAGATTCATCAAGTGTAGTTGGGCAAAAAGA
TCAAGAACGATCCTTACGAACGACGCTGGAAATCAGAAAAACAGAGTGTAGAACAGAGGAATCGTCGACTGCAGAGTTTACTAGAAAACTTCTCGGCCGAAATCTCGACC
GGGATCCCGACCGAGATCGAGACCGGGATCCCGACCGAGATCGAGACCGGGATCGTGACCGGGATTGA
Protein sequenceShow/hide protein sequence
MNGNIVHGLNGIEYFVEPFVQFNVPRDIVYDQFIQWSCNGLSIDRTEGLEVIFRYGTIGFEGSTYYVPVPLRSEIDFRFMMSLALPLPNRVELFIPRQNIVHIDPNRPIE
HVSEPNYTPEDEAEDDLNVDNVDEVGVDNLDGENVDTALVTNEDVGTEPDNESTEGPSDDDGEEDPQMYDEHEIPEFFTQLDMATINSLSNTGVEKEFSYPNVELMRGNG
RPCSSRIRNEMDWREPIIKTRCGVCRQEGHNQRNCPHRAAGRDKAGYLILVTLWIRPALYIDTNVVIQRVHVVDMRVRDDLGNLALILSGLWTPVHEGLSFDLYGLFIRG
ALVLKDQENTGESLVVVFMVSSLLIFPDSSSVVGQKDQERSLRTTLEIRKTECRTEESSTAEFTRKLLGRNLDRDPDRDRDRDPDRDRDRDRDRD