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Spg018765 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018765
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:4499538..4513698
RNA-Seq ExpressionSpg018765
SyntenySpg018765
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.5e-0448.39Show/hide
Query:  VEIELPVPNTLPTSPESSRSSSSSMVQQ----------GKQVSLEEDDVCWLHAISRTKLAG
        VEIELP+P+TLPTS ESS S+SS++++           G    +  DDVCWLHA+ R K  G
Subjt:  VEIELPVPNTLPTSPESSRSSSSSMVQQ----------GKQVSLEEDDVCWLHAISRTKLAG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-0451.61Show/hide
Query:  VEIELPVPNTLPTSPESSRSSSSSMVQQGKQV----------SLEEDDVCWLHAISRTKLAG
        VEIELPVP+TLPTS ESS S+SS+ ++   +            + EDDVCWLHA+ R K AG
Subjt:  VEIELPVPNTLPTSPESSRSSSSSMVQQGKQV----------SLEEDDVCWLHAISRTKLAG

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]7.5e-0431.94Show/hide
Query:  VRPRGNRSSLQTRKLAKTPCLHENAT-IESAHVRSEAVEHENSIVEPASVRSEAVDTGTTVEPADLSTVAIDLFVKDTPTRMSPTWMLWIIASVSNTKWA
        V PRGNRSSLQT +L K     +  T I S  +          ++ P S  S   D    V      +V    + KD      P +++ ++         
Subjt:  VRPRGNRSSLQTRKLAKTPCLHENAT-IESAHVRSEAVEHENSIVEPASVRSEAVDTGTTVEPADLSTVAIDLFVKDTPTRMSPTWMLWIIASVSNTKWA

Query:  VSHSVTRIRRALHNVIGHVEIELPVPNTLPTSPESSRSSSS-------------SMVQQGKQVSLE--------EDDVCWLHAISRTKLAG
           +V    R LH++   +EIEL VP+TLPTS ESS S+SS             S V+   ++  E        E+DVCWLHA+ R K+AG
Subjt:  VSHSVTRIRRALHNVIGHVEIELPVPNTLPTSPESSRSSSS-------------SMVQQGKQVSLE--------EDDVCWLHAISRTKLAG

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.5e-0448.39Show/hide
Query:  VEIELPVPNTLPTSPESSRSSSSSMVQQ----------GKQVSLEEDDVCWLHAISRTKLAG
        VEIELP+P+TLPTS ESS S+SS++++           G    +  DDVCWLHA+ R K  G
Subjt:  VEIELPVPNTLPTSPESSRSSSSSMVQQ----------GKQVSLEEDDVCWLHAISRTKLAG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-0451.61Show/hide
Query:  VEIELPVPNTLPTSPESSRSSSSSMVQQGKQV----------SLEEDDVCWLHAISRTKLAG
        VEIELPVP+TLPTS ESS S+SS+ ++   +            + EDDVCWLHA+ R K AG
Subjt:  VEIELPVPNTLPTSPESSRSSSSSMVQQGKQV----------SLEEDDVCWLHAISRTKLAG

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase3.6e-0448.39Show/hide
Query:  VEIELPVPNTLPTSPESSRSSSSSMVQQ----------GKQVSLEEDDVCWLHAISRTKLAG
        VEIELP+P+TLPTS ESS S+SS++++           G    +  DDVCWLHA+ R K  G
Subjt:  VEIELPVPNTLPTSPESSRSSSSSMVQQ----------GKQVSLEEDDVCWLHAISRTKLAG

A0A5A7VMG9 Reverse transcriptase9.5e-0551.61Show/hide
Query:  VEIELPVPNTLPTSPESSRSSSSSMVQQGKQV----------SLEEDDVCWLHAISRTKLAG
        VEIELPVP+TLPTS ESS S+SS+ ++   +            + EDDVCWLHA+ R K AG
Subjt:  VEIELPVPNTLPTSPESSRSSSSSMVQQGKQV----------SLEEDDVCWLHAISRTKLAG

A0A5D3CAC6 Uncharacterized protein3.6e-0431.94Show/hide
Query:  VRPRGNRSSLQTRKLAKTPCLHENAT-IESAHVRSEAVEHENSIVEPASVRSEAVDTGTTVEPADLSTVAIDLFVKDTPTRMSPTWMLWIIASVSNTKWA
        V PRGNRSSLQT +L K     +  T I S  +          ++ P S  S   D    V      +V    + KD      P +++ ++         
Subjt:  VRPRGNRSSLQTRKLAKTPCLHENAT-IESAHVRSEAVEHENSIVEPASVRSEAVDTGTTVEPADLSTVAIDLFVKDTPTRMSPTWMLWIIASVSNTKWA

Query:  VSHSVTRIRRALHNVIGHVEIELPVPNTLPTSPESSRSSSS-------------SMVQQGKQVSLE--------EDDVCWLHAISRTKLAG
           +V    R LH++   +EIEL VP+TLPTS ESS S+SS             S V+   ++  E        E+DVCWLHA+ R K+AG
Subjt:  VSHSVTRIRRALHNVIGHVEIELPVPNTLPTSPESSRSSSS-------------SMVQQGKQVSLE--------EDDVCWLHAISRTKLAG

A0A5D3D150 Reverse transcriptase3.6e-0448.39Show/hide
Query:  VEIELPVPNTLPTSPESSRSSSSSMVQQ----------GKQVSLEEDDVCWLHAISRTKLAG
        VEIELP+P+TLPTS ESS S+SS++++           G    +  DDVCWLHA+ R K  G
Subjt:  VEIELPVPNTLPTSPESSRSSSSSMVQQ----------GKQVSLEEDDVCWLHAISRTKLAG

A0A5D3DX39 Reverse transcriptase9.5e-0551.61Show/hide
Query:  VEIELPVPNTLPTSPESSRSSSSSMVQQGKQV----------SLEEDDVCWLHAISRTKLAG
        VEIELPVP+TLPTS ESS S+SS+ ++   +            + EDDVCWLHA+ R K AG
Subjt:  VEIELPVPNTLPTSPESSRSSSSSMVQQGKQV----------SLEEDDVCWLHAISRTKLAG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCATTTCAAGGGAGAGGGTGGAGGAAGAAGAAGAAGAAGATTGCTGAGGGTTTGAGGTTGAAGAAGAGAGGAAAAGCTCATGCAAGTGCAACAATGGCAGAATCAGGGTT
CAACCTGCCTATCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAAGAACTAAGAGAGCACAAAATTTTTGTGCAAACGAGGAAGATCTCTGGTTTTCTCTGGTTTTTC
GAGCATTCTGGGGTTTACAAGTTGAATCAGAAGCTCTATTTGTGGTTTACTATTTCGTGGTCCGGTCTTATGCAAACTCATTGCATAGGATACCCCCGCTCGCATGTCTG
CTACATGGACGTTTTGGATCAATACGTTTGTATCAAATACGAAGCTGGTTGTATCTCATAGTTACTAGGGTAAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAA
ACTAGCTAAGACACCCTGTCTACACGAAAACGCTACCATCGAGTCTGCACACGTCAGATCTGAAGCCGTCGAGCACGAAAACTCCATCGTCGAGCCTGCAAGCGTCAGAT
CTGAAGCTGTCGACACTGGAACCACCGTGGAACCTGCCGATCTGTCCACTGTTGCCATCGATTTGTTCGTCAAGGATACCCCCACTCGCATGTCTCCTACATGGATGCTT
TGGATCATTGCATCTGTATCGAATACAAAGTGGGCCGTATCACATAGTGTCACCAGGATAAGGCGTGCCCTACACAACGTGATCGGTCATGTAGAGATCGAGCTCCCGGT
GCCTAATACACTACCAACGTCTCCTGAAAGTTCCAGATCAAGCTCCAGTTCAATGGTTCAACAGGGTAAACAGGTATCATTAGAGGAGGATGATGTCTGTTGGCTTCACG
CCATCTCTCGGACTAAGCTAGCAGGGCAAGGATTGCTGAAGAAAACTATAGAAAAAGAGCAGTGTTATGCTGCCAATTTTGCTTCTCAAACCCATAAACTCATAACTCTT
CATAAGCTTGAAATCCAAGCACTTTCCCTTCCAATTCCCATTACTAGAGGATCCCACAATCCGTTCCAAAGGCCTGAGAATAGAACGGAAGATCTTGTGGTGGTTCATGA
TCAGTTGGACCCTTGGGGTGGGGTGAAAGACATCTCATTCATTCTCTTACTCTCAGAGAATTCCCTTGAAGGCTCCCACCAGTCTCCTGCCTCTAGAAGTCTCAAAGTCA
TACCGGTGTAG
mRNA sequenceShow/hide mRNA sequence
GCATTTCAAGGGAGAGGGTGGAGGAAGAAGAAGAAGAAGATTGCTGAGGGTTTGAGGTTGAAGAAGAGAGGAAAAGCTCATGCAAGTGCAACAATGGCAGAATCAGGGTT
CAACCTGCCTATCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAAGAACTAAGAGAGCACAAAATTTTTGTGCAAACGAGGAAGATCTCTGGTTTTCTCTGGTTTTTC
GAGCATTCTGGGGTTTACAAGTTGAATCAGAAGCTCTATTTGTGGTTTACTATTTCGTGGTCCGGTCTTATGCAAACTCATTGCATAGGATACCCCCGCTCGCATGTCTG
CTACATGGACGTTTTGGATCAATACGTTTGTATCAAATACGAAGCTGGTTGTATCTCATAGTTACTAGGGTAAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAA
ACTAGCTAAGACACCCTGTCTACACGAAAACGCTACCATCGAGTCTGCACACGTCAGATCTGAAGCCGTCGAGCACGAAAACTCCATCGTCGAGCCTGCAAGCGTCAGAT
CTGAAGCTGTCGACACTGGAACCACCGTGGAACCTGCCGATCTGTCCACTGTTGCCATCGATTTGTTCGTCAAGGATACCCCCACTCGCATGTCTCCTACATGGATGCTT
TGGATCATTGCATCTGTATCGAATACAAAGTGGGCCGTATCACATAGTGTCACCAGGATAAGGCGTGCCCTACACAACGTGATCGGTCATGTAGAGATCGAGCTCCCGGT
GCCTAATACACTACCAACGTCTCCTGAAAGTTCCAGATCAAGCTCCAGTTCAATGGTTCAACAGGGTAAACAGGTATCATTAGAGGAGGATGATGTCTGTTGGCTTCACG
CCATCTCTCGGACTAAGCTAGCAGGGCAAGGATTGCTGAAGAAAACTATAGAAAAAGAGCAGTGTTATGCTGCCAATTTTGCTTCTCAAACCCATAAACTCATAACTCTT
CATAAGCTTGAAATCCAAGCACTTTCCCTTCCAATTCCCATTACTAGAGGATCCCACAATCCGTTCCAAAGGCCTGAGAATAGAACGGAAGATCTTGTGGTGGTTCATGA
TCAGTTGGACCCTTGGGGTGGGGTGAAAGACATCTCATTCATTCTCTTACTCTCAGAGAATTCCCTTGAAGGCTCCCACCAGTCTCCTGCCTCTAGAAGTCTCAAAGTCA
TACCGGTGTAG
Protein sequenceShow/hide protein sequence
AFQGRGWRKKKKKIAEGLRLKKRGKAHASATMAESGFNLPISGFLFGLSYTERTKRAQNFCANEEDLWFSLVFRAFWGLQVESEALFVVYYFVVRSYANSLHRIPPLACL
LHGRFGSIRLYQIRSWLYLIVTRVRPRGNRSSLQTRKLAKTPCLHENATIESAHVRSEAVEHENSIVEPASVRSEAVDTGTTVEPADLSTVAIDLFVKDTPTRMSPTWML
WIIASVSNTKWAVSHSVTRIRRALHNVIGHVEIELPVPNTLPTSPESSRSSSSSMVQQGKQVSLEEDDVCWLHAISRTKLAGQGLLKKTIEKEQCYAANFASQTHKLITL
HKLEIQALSLPIPITRGSHNPFQRPENRTEDLVVVHDQLDPWGGVKDISFILLLSENSLEGSHQSPASRSLKVIPV