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Spg018778 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018778
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold3:12773472..12783564
RNA-Seq ExpressionSpg018778
SyntenySpg018778
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]5.3e-0673.68Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
KAA0040839.1 uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa]7.7e-0560.47Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDES
        VRVA  PTQYA+ FGDKT+W AG++ TQ+ IHSF  LG +  S
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDES
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-0563.41Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSFP LG +
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.8e-0776.32Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSFPLLG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]1.6e-0562.79Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDE
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH FP LG VD+
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDE
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class2.6e-0673.68Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
A0A5A7THR9 Uncharacterized protein3.7e-0560.47Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDES
        VRVA  PTQYA+ FGDKT+W AG++ TQ+ IHSF  LG +  S
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDES
A0A5A7TKJ4 Gag/pol protein5.7e-0663.41Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSFP LG +
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
A0A5A7VFG5 Ty1-copia retrotransposon protein2.3e-0776.32Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSFPLLG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-947.5e-0662.79Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDE
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH FP LG VD+
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCGGAAAGGGGGTAGCGTCGCGACGTTATACGGCACAGCGTCGCGACGCTGTGACGTCATCGACTTGCCGGCCAAGAAATGGACAGCGTCTCGACGCTAGGCGTTTTCC
AGAACTTCCAGCTACGGATTGGGCTTCTTTTCTTGGGCCAACTTCAATTCTTTTTGGGCTTTTTCTTCATACATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCT
TCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTCTGTGATTACGGACACT
CGTGAAGGATTGACTTACCGGCATAGGTCTACATCCATGGAAACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTAATTGGGAATTCCAATCCTTTCACATTAAGGCAGT
CAAAACTGTATTCCCTAATGCTTTTCACTGCGCAATGTCGGGAGCCGATAACGCTAATTTGGTGTTACTTCGGGCCAATTACGGAGTTTTGGAGCCATCTCGGTGTCTTG
GACAGCGAGGAGCCGCTCCCCATCTCCCTTCTCGTTTTCGACCTCAGCAACTTTCCGGCGTTTCTTCTTCGTCTTCGACCGTAGCAGCCGCCGCCTGGTCCCGTTCCCCT
CTTCTTCATCGACCTCCGCAGCTCCGACGCCGGCGTCAAGTGCAACTCGTGAATTCCGGCGGCGACAGCTTCGGTGTTCGACCATCGGCGGCGTGGGATAGGGCCGAGAT
TATTGCATTTTCCGGCAGTGGCGTCGTTCGGCGCGTCCAGCAGGGCTTGGCGGCGTCTCAGCGACTATCGGGCAAGCGTTCTCTTCATAATCGGCGGTTCAAGTATAGAG
TCTTCAAGTTTCTGTGTAGTTGGGCACTATTGACATTGGGTAAGTGTTTTAAACTTGTGTTTTGGTTGGGTTATGGTACTAGAGGCTTACCCATTGATTGTGGCTATTGT
TTCCAAGGTTTTCTTCGCGTTCGGAACCTTAATCGTCTTGCTCTTGGATCCGTTATGTGCATAAGGGATGGGCTGAATATTGTTGTAGTTGTGGTTGAAGCCTGGATGCA
AGGTTTGACTCGCTATGTCTATAGGAGTGTTTTGTTCTTGTTCCAGAGCTCAGTTTCAGGCACGCTAGCGTGCGCTCTCTCAGTTCAGGACGGTGTTGAGCTTATGATCA
GGCACGTTGCTCGTGCGCCGTTTGGCACCAGGCATGTTTACATGCGTCAGTGGTACTTGAGAGCGTTGGCGATCGGCGAGAGTCGTGGCTTGGCTGGCTATGGGACTGCA
GCTGCAAATTTTGTCATTTTCCTTAGGAATACAATTCCTTTCATTCTAACATCAGTTTCATGTTGA
mRNA sequenceShow/hide mRNA sequence
CTCGGAAAGGGGGTAGCGTCGCGACGTTATACGGCACAGCGTCGCGACGCTGTGACGTCATCGACTTGCCGGCCAAGAAATGGACAGCGTCTCGACGCTAGGCGTTTTCC
AGAACTTCCAGCTACGGATTGGGCTTCTTTTCTTGGGCCAACTTCAATTCTTTTTGGGCTTTTTCTTCATACATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCT
TCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTCTGTGATTACGGACACT
CGTGAAGGATTGACTTACCGGCATAGGTCTACATCCATGGAAACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTAATTGGGAATTCCAATCCTTTCACATTAAGGCAGT
CAAAACTGTATTCCCTAATGCTTTTCACTGCGCAATGTCGGGAGCCGATAACGCTAATTTGGTGTTACTTCGGGCCAATTACGGAGTTTTGGAGCCATCTCGGTGTCTTG
GACAGCGAGGAGCCGCTCCCCATCTCCCTTCTCGTTTTCGACCTCAGCAACTTTCCGGCGTTTCTTCTTCGTCTTCGACCGTAGCAGCCGCCGCCTGGTCCCGTTCCCCT
CTTCTTCATCGACCTCCGCAGCTCCGACGCCGGCGTCAAGTGCAACTCGTGAATTCCGGCGGCGACAGCTTCGGTGTTCGACCATCGGCGGCGTGGGATAGGGCCGAGAT
TATTGCATTTTCCGGCAGTGGCGTCGTTCGGCGCGTCCAGCAGGGCTTGGCGGCGTCTCAGCGACTATCGGGCAAGCGTTCTCTTCATAATCGGCGGTTCAAGTATAGAG
TCTTCAAGTTTCTGTGTAGTTGGGCACTATTGACATTGGGTAAGTGTTTTAAACTTGTGTTTTGGTTGGGTTATGGTACTAGAGGCTTACCCATTGATTGTGGCTATTGT
TTCCAAGGTTTTCTTCGCGTTCGGAACCTTAATCGTCTTGCTCTTGGATCCGTTATGTGCATAAGGGATGGGCTGAATATTGTTGTAGTTGTGGTTGAAGCCTGGATGCA
AGGTTTGACTCGCTATGTCTATAGGAGTGTTTTGTTCTTGTTCCAGAGCTCAGTTTCAGGCACGCTAGCGTGCGCTCTCTCAGTTCAGGACGGTGTTGAGCTTATGATCA
GGCACGTTGCTCGTGCGCCGTTTGGCACCAGGCATGTTTACATGCGTCAGTGGTACTTGAGAGCGTTGGCGATCGGCGAGAGTCGTGGCTTGGCTGGCTATGGGACTGCA
GCTGCAAATTTTGTCATTTTCCTTAGGAATACAATTCCTTTCATTCTAACATCAGTTTCATGTTGA
Protein sequenceShow/hide protein sequence
LGKGVASRRYTAQRRDAVTSSTCRPRNGQRLDARRFPELPATDWASFLGPTSILFGLFLHTWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDESVITDT
REGLTYRHRSTSMETEMFYSEKSSANWEFQSFHIKAVKTVFPNAFHCAMSGADNANLVLLRANYGVLEPSRCLGQRGAAPHLPSRFRPQQLSGVSSSSSTVAAAAWSRSP
LLHRPPQLRRRRQVQLVNSGGDSFGVRPSAAWDRAEIIAFSGSGVVRRVQQGLAASQRLSGKRSLHNRRFKYRVFKFLCSWALLTLGKCFKLVFWLGYGTRGLPIDCGYC
FQGFLRVRNLNRLALGSVMCIRDGLNIVVVVVEAWMQGLTRYVYRSVLFLFQSSVSGTLACALSVQDGVELMIRHVARAPFGTRHVYMRQWYLRALAIGESRGLAGYGTA
AANFVIFLRNTIPFILTSVSC