; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018790 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018790
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationscaffold3:10411350..10415557
RNA-Seq ExpressionSpg018790
SyntenySpg018790
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH00303.1 Ribonuclease H-like superfamily protein [Prunus dulcis]4.0e-1627.31Show/hide
Query:  GEMEERKMIKSLIICWLMWTFRNTIFHSKLRPDTTQLQSQISRYMEEFQIEDDTHRVATLLAPRSTG-----------NWIPPPPRMWKLNCDAVWNEEK
        G +EE   + + ++ W +W  RNT+  + +R       + +   ++EF + +    VAT +  +  G            W  PPP + KLNCD  W  + 
Subjt:  GEMEERKMIKSLIICWLMWTFRNTIFHSKLRPDTTQLQSQISRYMEEFQIEDDTHRVATLLAPRSTG-----------NWIPPPPRMWKLNCDAVWNEEK

Query:  HLRGLGWIVRNGNDAPIIAGFCCIAKPWRIPWLETLAISEGLR-TLPPDSPSVLVECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQVEGLYHVLK
           G+GW++R+G    I AG C   +       E  A+ E L   L      V VE D+L +I++LN E+  + E+   + +V  L          +  +
Subjt:  HLRGLGWIVRNGNDAPIIAGFCCIAKPWRIPWLETLAISEGLR-TLPPDSPSVLVECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQVEGLYHVLK

Query:  RHNQMAHNLARKACLGGSSASWAHSFPNWILDLNLADI
        + NQ AHN+A  A   G   SW    P W+ +    DI
Subjt:  RHNQMAHNLARKACLGGSSASWAHSFPNWILDLNLADI

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.7e-2029.44Show/hide
Query:  DSGEMEERKMIKSLIICWLMWTFRNTIFHSKLRPDTTQLQSQISRY----------MEEFQIEDDTHRVATLLAPRSTGNWIPPPPRMWKLNCDAVWNEE
        D    EER+  +S+II W +W  RN      + P+T  +Q  I RY          ++      D H +   +   +   W PP    WKLN +A W  +
Subjt:  DSGEMEERKMIKSLIICWLMWTFRNTIFHSKLRPDTTQLQSQISRY----------MEEFQIEDDTHRVATLLAPRSTGNWIPPPPRMWKLNCDAVWNEE

Query:  KHLRGLGWIVRNGNDAPIIAGFCCIAKPWRIPWLETLAISEGLRTLPPD-SPSVLVECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQVEGLYHVL
         +  G+GWI+R+     I A    I     I +LE +AI EGLR +  +    + +E D+L+ I LL+ +  D+TE+   + E+  +  + ++  + H+ 
Subjt:  KHLRGLGWIVRNGNDAPIIAGFCCIAKPWRIPWLETLAISEGLRTLPPD-SPSVLVECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQVEGLYHVL

Query:  KRHNQMAHNLARKA
        +  N++AH LAR+A
Subjt:  KRHNQMAHNLARKA

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]4.3e-1829.41Show/hide
Query:  DYLENLWRKADSGEMEERKMIKSLIICWLMWTFRNTIFHSKLRPDTTQLQSQISRYMEEFQIEDDTHRVATLL------APRSTGNWIPPPPRMWKLNCD
        DY + +WR +D     + K    L++ W +WT+RN I HS +     Q  SQ  R   E +I + T  +   L       PR+ G W PP   +WKLN D
Subjt:  DYLENLWRKADSGEMEERKMIKSLIICWLMWTFRNTIFHSKLRPDTTQLQSQISRYMEEFQIEDDTHRVATLL------APRSTGNWIPPPPRMWKLNCD

Query:  AVWNEEKHLRGLGWIVRNGNDAPIIAGFCCIAKPWRIPWLETLAISEGLRTLPPDSPSVLVECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQVEG
        A W +  H  GLGWIVR+ ++   I   C  A        ++L +  G++        + +E D L+++ ++N      TE+   + ++        +EG
Subjt:  AVWNEEKHLRGLGWIVRNGNDAPIIAGFCCIAKPWRIPWLETLAISEGLRTLPPDSPSVLVECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQVEG

Query:  LYHVLKRHNQMAHNLARKACL
          H+  + N +AH +AR+AC+
Subjt:  LYHVLKRHNQMAHNLARKACL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.3e-1930.19Show/hide
Query:  LIICWLMWTFRN-TIFHSKLRPDTTQLQSQISRYMEEFQIEDDTHRVATLLAPRSTGNWIPPPPRMWKLNCDAVWNEEKHLRGLGWIVRNGNDAPIIAGF
        LI  W++W  RN  IF  +    +T +Q Q+++++ E   + +T          +   W PPP  +W LN DA W++  H  G+GWI+R+ +   ++AG 
Subjt:  LIICWLMWTFRN-TIFHSKLRPDTTQLQSQISRYMEEFQIEDDTHRVATLLAPRSTGNWIPPPPRMWKLNCDAVWNEEKHLRGLGWIVRNGNDAPIIAGF

Query:  CCIAKPWRIPWLETLAISEGLRTLPPDSPSVL----VECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQVEGLYHVLKRHNQMAHNLARKACLGGS
          +     +  LE  AI EGLR L   +  VL    +E D+ ++  LLN + +D T+    + E+ +L+   ++     V +  N  AH+LA++A +   
Subjt:  CCIAKPWRIPWLETLAISEGLRTLPPDSPSVL----VECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQVEGLYHVLKRHNQMAHNLARKACLGGS

Query:  SASWAHSFPNWI
        S  W   FPNW+
Subjt:  SASWAHSFPNWI

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]5.0e-1928.83Show/hide
Query:  DSGEMEERKMIKSLIICWLMWTFRNTIFHSKLRPDTTQLQSQISRYMEEFQIED----------DTHRVATLLAPRSTGNWIPPPPRMWKLNCDAVWNEE
        D    EER+  +S+II W +W  RN      +  +T  +Q  I RY+      D          D H +   +   +   W PP    WKLN DA W  +
Subjt:  DSGEMEERKMIKSLIICWLMWTFRNTIFHSKLRPDTTQLQSQISRYMEEFQIED----------DTHRVATLLAPRSTGNWIPPPPRMWKLNCDAVWNEE

Query:  KHLRGLGWIVRNGNDAPIIAGFCCIAKPWRIPWLETLAISEGLRTLPPD---------SPSVLVECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQ
         +  G+GWI+R+     I A    I     I +LE +AI EGLR +  +            + +E D+L+ I LL+ +  D+TE+   + E+  +  + +
Subjt:  KHLRGLGWIVRNGNDAPIIAGFCCIAKPWRIPWLETLAISEGLRTLPPD---------SPSVLVECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQ

Query:  VEGLYHVLKRHNQMAHNLARKA
        +  + H+ +  N++AH+LAR+A
Subjt:  VEGLYHVLKRHNQMAHNLARKA

TrEMBL top hitse value%identityAlignment
A0A4Y1R838 Ribonuclease H-like superfamily protein1.9e-1627.31Show/hide
Query:  GEMEERKMIKSLIICWLMWTFRNTIFHSKLRPDTTQLQSQISRYMEEFQIEDDTHRVATLLAPRSTG-----------NWIPPPPRMWKLNCDAVWNEEK
        G +EE   + + ++ W +W  RNT+  + +R       + +   ++EF + +    VAT +  +  G            W  PPP + KLNCD  W  + 
Subjt:  GEMEERKMIKSLIICWLMWTFRNTIFHSKLRPDTTQLQSQISRYMEEFQIEDDTHRVATLLAPRSTG-----------NWIPPPPRMWKLNCDAVWNEEK

Query:  HLRGLGWIVRNGNDAPIIAGFCCIAKPWRIPWLETLAISEGLR-TLPPDSPSVLVECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQVEGLYHVLK
           G+GW++R+G    I AG C   +       E  A+ E L   L      V VE D+L +I++LN E+  + E+   + +V  L          +  +
Subjt:  HLRGLGWIVRNGNDAPIIAGFCCIAKPWRIPWLETLAISEGLR-TLPPDSPSVLVECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQVEGLYHVLK

Query:  RHNQMAHNLARKACLGGSSASWAHSFPNWILDLNLADI
        + NQ AHN+A  A   G   SW    P W+ +    DI
Subjt:  RHNQMAHNLARKACLGGSSASWAHSFPNWILDLNLADI

A0A6J1CP26 uncharacterized protein LOC1110134121.3e-2029.44Show/hide
Query:  DSGEMEERKMIKSLIICWLMWTFRNTIFHSKLRPDTTQLQSQISRY----------MEEFQIEDDTHRVATLLAPRSTGNWIPPPPRMWKLNCDAVWNEE
        D    EER+  +S+II W +W  RN      + P+T  +Q  I RY          ++      D H +   +   +   W PP    WKLN +A W  +
Subjt:  DSGEMEERKMIKSLIICWLMWTFRNTIFHSKLRPDTTQLQSQISRY----------MEEFQIEDDTHRVATLLAPRSTGNWIPPPPRMWKLNCDAVWNEE

Query:  KHLRGLGWIVRNGNDAPIIAGFCCIAKPWRIPWLETLAISEGLRTLPPD-SPSVLVECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQVEGLYHVL
         +  G+GWI+R+     I A    I     I +LE +AI EGLR +  +    + +E D+L+ I LL+ +  D+TE+   + E+  +  + ++  + H+ 
Subjt:  KHLRGLGWIVRNGNDAPIIAGFCCIAKPWRIPWLETLAISEGLRTLPPD-SPSVLVECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQVEGLYHVL

Query:  KRHNQMAHNLARKA
        +  N++AH LAR+A
Subjt:  KRHNQMAHNLARKA

A0A6J1D4B6 uncharacterized protein LOC1110171812.1e-1829.41Show/hide
Query:  DYLENLWRKADSGEMEERKMIKSLIICWLMWTFRNTIFHSKLRPDTTQLQSQISRYMEEFQIEDDTHRVATLL------APRSTGNWIPPPPRMWKLNCD
        DY + +WR +D     + K    L++ W +WT+RN I HS +     Q  SQ  R   E +I + T  +   L       PR+ G W PP   +WKLN D
Subjt:  DYLENLWRKADSGEMEERKMIKSLIICWLMWTFRNTIFHSKLRPDTTQLQSQISRYMEEFQIEDDTHRVATLL------APRSTGNWIPPPPRMWKLNCD

Query:  AVWNEEKHLRGLGWIVRNGNDAPIIAGFCCIAKPWRIPWLETLAISEGLRTLPPDSPSVLVECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQVEG
        A W +  H  GLGWIVR+ ++   I   C  A        ++L +  G++        + +E D L+++ ++N      TE+   + ++        +EG
Subjt:  AVWNEEKHLRGLGWIVRNGNDAPIIAGFCCIAKPWRIPWLETLAISEGLRTLPPDSPSVLVECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQVEG

Query:  LYHVLKRHNQMAHNLARKACL
          H+  + N +AH +AR+AC+
Subjt:  LYHVLKRHNQMAHNLARKACL

A0A6J1DNV9 uncharacterized protein LOC1110224036.4e-2030.19Show/hide
Query:  LIICWLMWTFRN-TIFHSKLRPDTTQLQSQISRYMEEFQIEDDTHRVATLLAPRSTGNWIPPPPRMWKLNCDAVWNEEKHLRGLGWIVRNGNDAPIIAGF
        LI  W++W  RN  IF  +    +T +Q Q+++++ E   + +T          +   W PPP  +W LN DA W++  H  G+GWI+R+ +   ++AG 
Subjt:  LIICWLMWTFRN-TIFHSKLRPDTTQLQSQISRYMEEFQIEDDTHRVATLLAPRSTGNWIPPPPRMWKLNCDAVWNEEKHLRGLGWIVRNGNDAPIIAGF

Query:  CCIAKPWRIPWLETLAISEGLRTLPPDSPSVL----VECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQVEGLYHVLKRHNQMAHNLARKACLGGS
          +     +  LE  AI EGLR L   +  VL    +E D+ ++  LLN + +D T+    + E+ +L+   ++     V +  N  AH+LA++A +   
Subjt:  CCIAKPWRIPWLETLAISEGLRTLPPDSPSVL----VECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQVEGLYHVLKRHNQMAHNLARKACLGGS

Query:  SASWAHSFPNWI
        S  W   FPNW+
Subjt:  SASWAHSFPNWI

A0A6J1DSV1 uncharacterized protein LOC1110236082.4e-1928.83Show/hide
Query:  DSGEMEERKMIKSLIICWLMWTFRNTIFHSKLRPDTTQLQSQISRYMEEFQIED----------DTHRVATLLAPRSTGNWIPPPPRMWKLNCDAVWNEE
        D    EER+  +S+II W +W  RN      +  +T  +Q  I RY+      D          D H +   +   +   W PP    WKLN DA W  +
Subjt:  DSGEMEERKMIKSLIICWLMWTFRNTIFHSKLRPDTTQLQSQISRYMEEFQIED----------DTHRVATLLAPRSTGNWIPPPPRMWKLNCDAVWNEE

Query:  KHLRGLGWIVRNGNDAPIIAGFCCIAKPWRIPWLETLAISEGLRTLPPD---------SPSVLVECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQ
         +  G+GWI+R+     I A    I     I +LE +AI EGLR +  +            + +E D+L+ I LL+ +  D+TE+   + E+  +  + +
Subjt:  KHLRGLGWIVRNGNDAPIIAGFCCIAKPWRIPWLETLAISEGLRTLPPD---------SPSVLVECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQ

Query:  VEGLYHVLKRHNQMAHNLARKA
        +  + H+ +  N++AH+LAR+A
Subjt:  VEGLYHVLKRHNQMAHNLARKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G03566.1 unknown protein3.7e-0429.03Show/hide
Query:  ICWLMWTFRNTIFHSKLRPDTTQLQSQISRYMEEFQIEDDTHRVAT------LLAPRSTGNWIPPPPRMWKLNCDAVWNEEKHLRGLGWIVRN
        + W +W  RNT   +  + D   L + I+   EE ++ +    + T       L PR    W  PP    K N    W  + H+ G  WIVRN
Subjt:  ICWLMWTFRNTIFHSKLRPDTTQLQSQISRYMEEFQIEDDTHRVAT------LLAPRSTGNWIPPPPRMWKLNCDAVWNEEKHLRGLGWIVRN

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.3e-0422.64Show/hide
Query:  WLMWTF----RNTIF-HSKLRPDTT--QLQSQISRYMEEFQIEDDTHRVATLLAPRSTGNWIPPPPRMWKLNCDAVWNEEKHLRGLGWIVRNGNDAPIIA
        WLMW       + +F H++ +  TT     +    +++     +  +        R+T  W PP     K N DA  +E   + GLGWI+RN     I  
Subjt:  WLMWTF----RNTIF-HSKLRPDTT--QLQSQISRYMEEFQIEDDTHRVATLLAPRSTGNWIPPPPRMWKLNCDAVWNEEKHLRGLGWIVRNGNDAPIIA

Query:  GFCCIAKPWRIPWLETLAISEGLR-TLPPDSPSVLVECDALQIIRLLNGEEDDETELRNFIGEVKS-LKSEKQVEGLYHVLKRHNQMAHNLARKACLGGS
        G             E   +   ++ +       V+ E D   I R++N  +     L++F+  ++S + S + +E  +   +  N  A  LA++A    +
Subjt:  GFCCIAKPWRIPWLETLAISEGLR-TLPPDSPSVLVECDALQIIRLLNGEEDDETELRNFIGEVKS-LKSEKQVEGLYHVLKRHNQMAHNLARKACLGGS

Query:  SASWAHSFPNWI
          S  HS P ++
Subjt:  SASWAHSFPNWI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTCTCGACCCCTCTTTCCCTCCTCATCTCCGATCCTTTTCTTGCCGCCGACGACCAACCACCACCGGAAGCGTCGCCGCCGTCCAACCATCGTCATTGCAAACTC
GAATAAGCAGCACCTATGCATCAATGGATACCACCATCCCAGTTATTGCCCTCAAATTGTCACTGTTTTATCGAAGGATTGGTCTCCGGCGGATTATCTAGAGAACCTAT
GGAGAAAAGCAGATTCAGGAGAGATGGAGGAAAGGAAAATGATTAAAAGCCTAATTATCTGTTGGCTGATGTGGACTTTCAGAAACACAATCTTTCATTCCAAATTAAGG
CCAGATACAACACAGTTACAGTCTCAAATTTCCAGATATATGGAAGAATTTCAGATAGAGGATGATACTCACAGGGTTGCAACTCTTTTGGCCCCGAGGTCTACAGGAAA
TTGGATCCCGCCTCCGCCGAGAATGTGGAAACTCAACTGCGATGCTGTGTGGAATGAGGAGAAGCATCTCAGGGGTTTGGGCTGGATTGTTCGAAATGGGAACGACGCTC
CTATTATTGCTGGGTTTTGTTGCATCGCTAAACCGTGGAGGATACCGTGGTTGGAGACACTGGCGATTAGCGAAGGCCTTCGCACGCTCCCACCAGATTCTCCCTCTGTT
TTGGTGGAGTGTGACGCCCTCCAAATAATTAGACTCTTGAATGGAGAAGAAGACGATGAGACTGAGTTGAGGAACTTCATTGGGGAAGTCAAATCCCTAAAATCTGAGAA
GCAAGTGGAAGGCTTGTACCATGTTCTGAAGAGGCACAACCAGATGGCACATAATCTTGCACGCAAGGCATGTCTGGGTGGGAGTTCTGCTTCTTGGGCCCACTCTTTTC
CTAATTGGATTCTTGATTTAAATTTAGCTGACATTGGAGGTTTAAATACCAATAGTGGGGGATCCTGTCCCATAGGTGTTATCCCAATGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCTCTCGACCCCTCTTTCCCTCCTCATCTCCGATCCTTTTCTTGCCGCCGACGACCAACCACCACCGGAAGCGTCGCCGCCGTCCAACCATCGTCATTGCAAACTC
GAATAAGCAGCACCTATGCATCAATGGATACCACCATCCCAGTTATTGCCCTCAAATTGTCACTGTTTTATCGAAGGATTGGTCTCCGGCGGATTATCTAGAGAACCTAT
GGAGAAAAGCAGATTCAGGAGAGATGGAGGAAAGGAAAATGATTAAAAGCCTAATTATCTGTTGGCTGATGTGGACTTTCAGAAACACAATCTTTCATTCCAAATTAAGG
CCAGATACAACACAGTTACAGTCTCAAATTTCCAGATATATGGAAGAATTTCAGATAGAGGATGATACTCACAGGGTTGCAACTCTTTTGGCCCCGAGGTCTACAGGAAA
TTGGATCCCGCCTCCGCCGAGAATGTGGAAACTCAACTGCGATGCTGTGTGGAATGAGGAGAAGCATCTCAGGGGTTTGGGCTGGATTGTTCGAAATGGGAACGACGCTC
CTATTATTGCTGGGTTTTGTTGCATCGCTAAACCGTGGAGGATACCGTGGTTGGAGACACTGGCGATTAGCGAAGGCCTTCGCACGCTCCCACCAGATTCTCCCTCTGTT
TTGGTGGAGTGTGACGCCCTCCAAATAATTAGACTCTTGAATGGAGAAGAAGACGATGAGACTGAGTTGAGGAACTTCATTGGGGAAGTCAAATCCCTAAAATCTGAGAA
GCAAGTGGAAGGCTTGTACCATGTTCTGAAGAGGCACAACCAGATGGCACATAATCTTGCACGCAAGGCATGTCTGGGTGGGAGTTCTGCTTCTTGGGCCCACTCTTTTC
CTAATTGGATTCTTGATTTAAATTTAGCTGACATTGGAGGTTTAAATACCAATAGTGGGGGATCCTGTCCCATAGGTGTTATCCCAATGCTTTAA
Protein sequenceShow/hide protein sequence
MVSRPLFPSSSPILFLPPTTNHHRKRRRRPTIVIANSNKQHLCINGYHHPSYCPQIVTVLSKDWSPADYLENLWRKADSGEMEERKMIKSLIICWLMWTFRNTIFHSKLR
PDTTQLQSQISRYMEEFQIEDDTHRVATLLAPRSTGNWIPPPPRMWKLNCDAVWNEEKHLRGLGWIVRNGNDAPIIAGFCCIAKPWRIPWLETLAISEGLRTLPPDSPSV
LVECDALQIIRLLNGEEDDETELRNFIGEVKSLKSEKQVEGLYHVLKRHNQMAHNLARKACLGGSSASWAHSFPNWILDLNLADIGGLNTNSGGSCPIGVIPML