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Spg018797 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018797
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:8416951..8421680
RNA-Seq ExpressionSpg018797
SyntenySpg018797
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025357.1 hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa]1.6e-1453.61Show/hide
Query:  LFGLSYTEGTKRAQDFRAKQE--DLWFSLVFRAFWGVQVASEALFGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        LFGLSY EGTKR +  R   +  +L  +++F                  L TLSVLRDND +VEIELPVPDTLPTSAES RS+S+TW+ELY ES+H+
Subjt:  LFGLSYTEGTKRAQDFRAKQE--DLWFSLVFRAFWGVQVASEALFGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-1353.61Show/hide
Query:  LFGLSYTEGTKRAQDFRAKQE--DLWFSLVFRAFWGVQVASEALFGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        LFGL Y EGTKR +  R   +  +L  +++F                  L TLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTW+EL  E VH+
Subjt:  LFGLSYTEGTKRAQDFRAKQE--DLWFSLVFRAFWGVQVASEALFGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-1385.71Show/hide
Query:  PLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        PL TLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTW+ELY ESVH+
Subjt:  PLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-1366.67Show/hide
Query:  QVASEALFGYI------PLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        ++ S  L+G +      PL TLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTW+ELY+E VH+
Subjt:  QVASEALFGYI------PLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-1366.67Show/hide
Query:  QVASEALFGYI------PLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        ++ S  L+G +      PL TLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTW+ELY+E VH+
Subjt:  QVASEALFGYI------PLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein8.8e-1453.61Show/hide
Query:  LFGLSYTEGTKRAQDFRAKQE--DLWFSLVFRAFWGVQVASEALFGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        LFGL Y EGTKR +  R   +  +L  +++F                  L TLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTW+EL  E VH+
Subjt:  LFGLSYTEGTKRAQDFRAKQE--DLWFSLVFRAFWGVQVASEALFGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

A0A5A7V9N3 Reverse transcriptase8.8e-1485.71Show/hide
Query:  PLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        PL TLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTW+ELY ESVH+
Subjt:  PLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

A0A5A7VMG9 Reverse transcriptase8.8e-1466.67Show/hide
Query:  QVASEALFGYI------PLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        ++ S  L+G +      PL TLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTW+ELY+E VH+
Subjt:  QVASEALFGYI------PLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

A0A5D3DIM8 Uncharacterized protein8.0e-1553.61Show/hide
Query:  LFGLSYTEGTKRAQDFRAKQE--DLWFSLVFRAFWGVQVASEALFGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        LFGLSY EGTKR +  R   +  +L  +++F                  L TLSVLRDND +VEIELPVPDTLPTSAES RS+S+TW+ELY ES+H+
Subjt:  LFGLSYTEGTKRAQDFRAKQE--DLWFSLVFRAFWGVQVASEALFGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

A0A5D3DX39 Reverse transcriptase8.8e-1466.67Show/hide
Query:  QVASEALFGYI------PLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        ++ S  L+G +      PL TLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTW+ELY+E VH+
Subjt:  QVASEALFGYI------PLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCTCTCTATGGCACGAGAGGGACTTCTGTTTTTTGGTTGGATCTCAAACAGGTTGTTCATTAGAGGAGCACTGGAACTTAAGGTGTAGAGGTCCATTGAGAATTAT
ACAACGAGGTGAAGATCAAGGGGCTGCTGCAAATCAAAGAATAAAGCTTGCAGAATTTGGTGAAATTTCGGTCAAGGCTTCAACGTTAGAAAAAGCTCAAGCAAAGCCAG
CCATAGCAGAATCTGAGTTCAACATGCCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTC
TGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGCATCAGAAGCTCTATTTGGTTACATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTAT
CGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACATGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAA
ATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCTCTCTATGGCACGAGAGGGACTTCTGTTTTTTGGTTGGATCTCAAACAGGTTGTTCATTAGAGGAGCACTGGAACTTAAGGTGTAGAGGTCCATTGAGAATTAT
ACAACGAGGTGAAGATCAAGGGGCTGCTGCAAATCAAAGAATAAAGCTTGCAGAATTTGGTGAAATTTCGGTCAAGGCTTCAACGTTAGAAAAAGCTCAAGCAAAGCCAG
CCATAGCAGAATCTGAGTTCAACATGCCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTC
TGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGCATCAGAAGCTCTATTTGGTTACATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTAT
CGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACATGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAA
ATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MPSLWHERDFCFLVGSQTGCSLEEHWNLRCRGPLRIIQRGEDQGAAANQRIKLAEFGEISVKASTLEKAQAKPAIAESEFNMPTSGFLFGLSYTEGTKRAQDFRAKQEDL
WFSLVFRAFWGVQVASEALFGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVL