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Spg018803 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018803
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase V subunit 5C-like
Genome locationscaffold3:18177164..18182410
RNA-Seq ExpressionSpg018803
SyntenySpg018803
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON35554.1 hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]1.0e-1150.6Show/hide
Query:  ANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCK--RAGVLENEEQL
        A  W  F+K  LLPTTH  TVS++R+LL  ++    SI+VG++I SEI  C  +K G LFFP+ IT LC+  RA  L NEE+L
Subjt:  ANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCK--RAGVLENEEQL

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]9.6e-1833.33Show/hide
Query:  ANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCK--RAGVLENEEQL-----------------
        A  W  F+K RLLPTTH  TVS++R+LL  ++    SI+VG++I SEI  C  +K G LFFP+ IT LC+  RA  L NEE+L                 
Subjt:  ANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCK--RAGVLENEEQL-----------------

Query:  --------------ALSTSKQ------------------------------EYAERQSLTFWSYVKRRDANLKKALAENFSKPYPALPVFPEDLL
                      A ++S +                              ++  +Q   FW+Y K RD  LKKAL  NF++P P  P FP+++L
Subjt:  --------------ALSTSKQ------------------------------EYAERQSLTFWSYVKRRDANLKKALAENFSKPYPALPVFPEDLL

PON59596.1 hypothetical protein PanWU01x14_158080 [Parasponia andersonii]5.1e-1934.36Show/hide
Query:  ANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCK--RAGVLENEEQLAL---------------
        A  W  F+K RLLPTTH  TVS++R+LL +++    SI+VG++I SEI  C  +K G LFFP+ IT LC+  RA  L NEE+L +               
Subjt:  ANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCK--RAGVLENEEQLAL---------------

Query:  ---------STSKQ-------------------------------------EYAERQSLTFWSYVKRRDANLKKALAENFSKPYPALPVFPEDLL
                 STS+                                      ++  +Q   FW+Y K RD  LKKAL  NF++P P  P FP++LL
Subjt:  ---------STSKQ-------------------------------------EYAERQSLTFWSYVKRRDANLKKALAENFSKPYPALPVFPEDLL

PON78020.1 hypothetical protein PanWU01x14_023740 [Parasponia andersonii]7.1e-2136.26Show/hide
Query:  ANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCKRAGVLENEEQL-------------------
        A  W  F+K RLLPTTH   VS++R+LL  ++    SI+VG++I SEI  C  +K G LFFP+ IT LC+ A  L NEE+L                   
Subjt:  ANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCKRAGVLENEEQL-------------------

Query:  -------------ALSTSK------------------QEYAERQSLTFWSYVKRRDANLKKALAENFSKPYPALPVFPEDLL
                     A S+S+                  QE+  +Q   FW+Y K RD  LKKAL  NF++P P  P FP+++L
Subjt:  -------------ALSTSK------------------QEYAERQSLTFWSYVKRRDANLKKALAENFSKPYPALPVFPEDLL

XP_024971944.1 uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus]7.1e-1338Show/hide
Query:  TFQSAHLKREANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCKRAGVLENEEQLALSTSKQEY
        T+++++LK  AN W+ FI+  L PTTHDS++S E+++L + +    +I+VGK++   I  C K++ GKLFFP+ I  L  +AGV E  + L +   ++++
Subjt:  TFQSAHLKREANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCKRAGVLENEEQLALSTSKQEY

TrEMBL top hitse value%identityAlignment
A0A2P5AGA5 Uncharacterized protein (Fragment)5.0e-1250.6Show/hide
Query:  ANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCK--RAGVLENEEQL
        A  W  F+K  LLPTTH  TVS++R+LL  ++    SI+VG++I SEI  C  +K G LFFP+ IT LC+  RA  L NEE+L
Subjt:  ANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCK--RAGVLENEEQL

A0A2P5BCG4 Uncharacterized protein (Fragment)4.6e-1833.33Show/hide
Query:  ANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCK--RAGVLENEEQL-----------------
        A  W  F+K RLLPTTH  TVS++R+LL  ++    SI+VG++I SEI  C  +K G LFFP+ IT LC+  RA  L NEE+L                 
Subjt:  ANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCK--RAGVLENEEQL-----------------

Query:  --------------ALSTSKQ------------------------------EYAERQSLTFWSYVKRRDANLKKALAENFSKPYPALPVFPEDLL
                      A ++S +                              ++  +Q   FW+Y K RD  LKKAL  NF++P P  P FP+++L
Subjt:  --------------ALSTSKQ------------------------------EYAERQSLTFWSYVKRRDANLKKALAENFSKPYPALPVFPEDLL

A0A2P5CEY2 Uncharacterized protein2.5e-1934.36Show/hide
Query:  ANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCK--RAGVLENEEQLAL---------------
        A  W  F+K RLLPTTH  TVS++R+LL +++    SI+VG++I SEI  C  +K G LFFP+ IT LC+  RA  L NEE+L +               
Subjt:  ANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCK--RAGVLENEEQLAL---------------

Query:  ---------STSKQ-------------------------------------EYAERQSLTFWSYVKRRDANLKKALAENFSKPYPALPVFPEDLL
                 STS+                                      ++  +Q   FW+Y K RD  LKKAL  NF++P P  P FP++LL
Subjt:  ---------STSKQ-------------------------------------EYAERQSLTFWSYVKRRDANLKKALAENFSKPYPALPVFPEDLL

A0A2P5CXU3 Uncharacterized protein (Fragment)1.1e-1149.43Show/hide
Query:  LKREANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCK--RAGVLENEEQL
        L   A  W  F+K RLLPTTH   VS+E VLL +++    SI+VG+II  EI  C  +K G LFFP+ IT +C+  RA  L NEE+L
Subjt:  LKREANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCK--RAGVLENEEQL

A0A2P5DXM3 Uncharacterized protein3.4e-2136.26Show/hide
Query:  ANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCKRAGVLENEEQL-------------------
        A  W  F+K RLLPTTH   VS++R+LL  ++    SI+VG++I SEI  C  +K G LFFP+ IT LC+ A  L NEE+L                   
Subjt:  ANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCKRAGVLENEEQL-------------------

Query:  -------------ALSTSK------------------QEYAERQSLTFWSYVKRRDANLKKALAENFSKPYPALPVFPEDLL
                     A S+S+                  QE+  +Q   FW+Y K RD  LKKAL  NF++P P  P FP+++L
Subjt:  -------------ALSTSK------------------QEYAERQSLTFWSYVKRRDANLKKALAENFSKPYPALPVFPEDLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTTTCAGTCAGCCCATCTGAAGAGGGAAGCAAATACATGGATGGGGTTTATCAAACAAAGGTTGCTTCCAACGACTCATGACTCGACGGTTTCTAGGGAACGGGT
TCTTCTGGCGTTCGCGATTTTTAGGTCTCTCAGCATTGATGTAGGGAAGATTATTGCCAGTGAAATATCTGGATGTTGGAAGAAGAAAGTGGGGAAGCTATTTTTCCCGA
ATACAATTACAATGCTTTGCAAGCGTGCAGGGGTTCTAGAGAATGAAGAACAACTTGCACTTTCGACCAGCAAGCAAGAGTATGCTGAGAGGCAATCTCTAACTTTCTGG
AGTTATGTTAAACGTCGTGATGCCAACCTGAAGAAGGCGCTAGCGGAAAATTTTTCCAAACCATACCCAGCCCTTCCAGTGTTCCCTGAGGATTTGTTGAACCCCTGGAT
TCCGCCCCCACCGATGGAAAGAGAAGAAGAGGATGATGAAAATGAGCAAGAAACCTTTTGCTTGAGCATTTCTTCTAGCCTGGTCACAGCTGCGACAAAGAAGATTCTGA
GAACTATTTTGCTGCAGCAGTCCTTGGTTTTGCAGAATGCTCAGCAGTTGGCGCATGGAAAGCTTGTTGCTGTAGCAGCTGGCGCATGGAAAGCTTGTTGCTGTAGCAAG
GAAAAATTGATCAAGTTTCTATCCAAGCAATACATGCTTTGGCTCAAAGCAACATATGCTTTGGCTCCAAACAACACATGCTTTGGCTCAAAGCAAGACATGCTTTGGCT
CAAAGCAACATATGCTTTGGCTCCAAGGAACACATGTTTTGGCTCCAAGCAAGAAAGCCTCCAGCTGGGAATGCCACATCAATTAATGAAGCCTTCCACGTGTAATTCAC
CTCCATCTGCTATTCTGCCTTTTCCAGCTCATGCTACAGCATATTCTGCAAAGAAAACTGGAGTTCCAGTTAGTTTAAATCCGAAATTAACGGGAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGTTTCAGTCAGCCCATCTGAAGAGGGAAGCAAATACATGGATGGGGTTTATCAAACAAAGGTTGCTTCCAACGACTCATGACTCGACGGTTTCTAGGGAACGGGT
TCTTCTGGCGTTCGCGATTTTTAGGTCTCTCAGCATTGATGTAGGGAAGATTATTGCCAGTGAAATATCTGGATGTTGGAAGAAGAAAGTGGGGAAGCTATTTTTCCCGA
ATACAATTACAATGCTTTGCAAGCGTGCAGGGGTTCTAGAGAATGAAGAACAACTTGCACTTTCGACCAGCAAGCAAGAGTATGCTGAGAGGCAATCTCTAACTTTCTGG
AGTTATGTTAAACGTCGTGATGCCAACCTGAAGAAGGCGCTAGCGGAAAATTTTTCCAAACCATACCCAGCCCTTCCAGTGTTCCCTGAGGATTTGTTGAACCCCTGGAT
TCCGCCCCCACCGATGGAAAGAGAAGAAGAGGATGATGAAAATGAGCAAGAAACCTTTTGCTTGAGCATTTCTTCTAGCCTGGTCACAGCTGCGACAAAGAAGATTCTGA
GAACTATTTTGCTGCAGCAGTCCTTGGTTTTGCAGAATGCTCAGCAGTTGGCGCATGGAAAGCTTGTTGCTGTAGCAGCTGGCGCATGGAAAGCTTGTTGCTGTAGCAAG
GAAAAATTGATCAAGTTTCTATCCAAGCAATACATGCTTTGGCTCAAAGCAACATATGCTTTGGCTCCAAACAACACATGCTTTGGCTCAAAGCAAGACATGCTTTGGCT
CAAAGCAACATATGCTTTGGCTCCAAGGAACACATGTTTTGGCTCCAAGCAAGAAAGCCTCCAGCTGGGAATGCCACATCAATTAATGAAGCCTTCCACGTGTAATTCAC
CTCCATCTGCTATTCTGCCTTTTCCAGCTCATGCTACAGCATATTCTGCAAAGAAAACTGGAGTTCCAGTTAGTTTAAATCCGAAATTAACGGGAAATTAA
Protein sequenceShow/hide protein sequence
MTFQSAHLKREANTWMGFIKQRLLPTTHDSTVSRERVLLAFAIFRSLSIDVGKIIASEISGCWKKKVGKLFFPNTITMLCKRAGVLENEEQLALSTSKQEYAERQSLTFW
SYVKRRDANLKKALAENFSKPYPALPVFPEDLLNPWIPPPPMEREEEDDENEQETFCLSISSSLVTAATKKILRTILLQQSLVLQNAQQLAHGKLVAVAAGAWKACCCSK
EKLIKFLSKQYMLWLKATYALAPNNTCFGSKQDMLWLKATYALAPRNTCFGSKQESLQLGMPHQLMKPSTCNSPPSAILPFPAHATAYSAKKTGVPVSLNPKLTGN