; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018820 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018820
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposable element Tf2
Genome locationscaffold3:18956677..18961851
RNA-Seq ExpressionSpg018820
SyntenySpg018820
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025901.1 hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa]1.8e-1751.02Show/hide
Query:  DKYKFSHAELKAVKQWFADNGYLQDLSKKKNAEFLNSKSKLIAALAQTTTEADFQKILNQATSIASSSSHHNS--EIEDEKGDNDYDLNDPFLDSQPI
        +KY F HA +K +K+WF +NGYLQD+ + KN +FLN KSKL+A LAQ TT+ADFQ++L    + ++SS   +S  + ++E+ D +YDL++PFLDSQP+
Subjt:  DKYKFSHAELKAVKQWFADNGYLQDLSKKKNAEFLNSKSKLIAALAQTTTEADFQKILNQATSIASSSSHHNS--EIEDEKGDNDYDLNDPFLDSQPI

KAA0034823.1 hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa]3.9e-2053.7Show/hide
Query:  IVKILQIKWWDKYKFSHAELKAVKQWFADNGYLQDLSKKKNAEFLNSKSKLIAALAQTTTEADFQKILNQATSIASSSSHHNSEI--EDEKGDNDYDLND
        + K L+IK W+KY F HA +K +K+WFA+N YLQD+ ++KN EFLN KSKL+ ALAQ TT+ADFQ++L+ A + +SSS   +S I  ++E+ D +YDL+D
Subjt:  IVKILQIKWWDKYKFSHAELKAVKQWFADNGYLQDLSKKKNAEFLNSKSKLIAALAQTTTEADFQKILNQATSIASSSSHHNSEI--EDEKGDNDYDLND

Query:  PFLDSQPI
          LDSQP+
Subjt:  PFLDSQPI

KAA0049709.1 hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa]1.1e-1437.31Show/hide
Query:  MSVDEYAMDLGFTPVNRPRTRSASIQIRESMESLTPPPRPSASLIRPT-VVTPMKPTVSPSTPSSSHQGSSIPTTFAEATNTYTYFKQIVKILQIKWWDK
        MS D+YAMDLGFT V R R+RS+SI+I    ES T PP+PS +LIRP+  V  M+   SP +PSS+ + S+ PTT+++A                     
Subjt:  MSVDEYAMDLGFTPVNRPRTRSASIQIRESMESLTPPPRPSASLIRPT-VVTPMKPTVSPSTPSSSHQGSSIPTTFAEATNTYTYFKQIVKILQIKWWDK

Query:  YKFSHAELKAVKQWFADNGYLQDLSKKKNAEFLNSKSKLIAALAQTTTEADFQKILNQATSIASSSSHHNSEI--EDEKGDNDYDLNDPFLDS
                                         + +SKL+AALAQ TT+ADFQ++L+   + +SSS   +S I  ++E+ D +YDL+DP+LDS
Subjt:  YKFSHAELKAVKQWFADNGYLQDLSKKKNAEFLNSKSKLIAALAQTTTEADFQKILNQATSIASSSSHHNSEI--EDEKGDNDYDLNDPFLDS

KAA0059031.1 polyprotein [Cucumis melo var. makuwa]4.6e-2150.81Show/hide
Query:  PPRPSASLIRPT-VVTPMKPTVSPSTPSSSHQGSSIPTTFAEA--------TNTYTYFKQIVKILQIKWWDKYKFSHAELKAVKQWFADNGYLQDLSKKK
        PPRPSA+LIR + +   M+P  S    SS+ + S+  TT+++         T +Y  +K ++K L+IKWW KY F HA +K +K+WFADNGYLQD+ ++K
Subjt:  PPRPSASLIRPT-VVTPMKPTVSPSTPSSSHQGSSIPTTFAEA--------TNTYTYFKQIVKILQIKWWDKYKFSHAELKAVKQWFADNGYLQDLSKKK

Query:  NAEFLNSKSKLIAALAQTTTEADF
        N EFLN KSKL+AALAQ TT+ADF
Subjt:  NAEFLNSKSKLIAALAQTTTEADF

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]6.8e-2545.13Show/hide
Query:  MSVDEYAMDLGFTPVNRPRTRSASIQIRESMESLTPPPRPSASLIRP-TVVTPMKPTVSPSTPSSSHQGSSIPTTFAEATNTYTYFKQIVKILQIKWWDK
        MSVD+YAMDLG+T V + R++S+ I IR  MES T PPRPS +LI P   V  M+   S ++PSS+ + S++PTT+++A    T  KQ V  ++IK + +
Subjt:  MSVDEYAMDLGFTPVNRPRTRSASIQIRESMESLTPPPRPSASLIRP-TVVTPMKPTVSPSTPSSSHQGSSIPTTFAEATNTYTYFKQIVKILQIKWWDK

Query:  YKFSHAELKAVKQWFADNGYLQDLSKKKNAEFLNSKSKLIAALAQTTTEADFQKILNQATSIASSSSHHNSEI--EDEKGDNDYDLNDPFLDSQP
              +   ++  +  NG LQD+ ++KNA+FLN K K +AAL Q T +ADFQ++L+ A + +SSS    S I  ++E+ D +YDL+DPFLDSQP
Subjt:  YKFSHAELKAVKQWFADNGYLQDLSKKKNAEFLNSKSKLIAALAQTTTEADFQKILNQATSIASSSSHHNSEI--EDEKGDNDYDLNDPFLDSQP

TrEMBL top hitse value%identityAlignment
A0A5A7SNT5 Uncharacterized protein8.7e-1851.02Show/hide
Query:  DKYKFSHAELKAVKQWFADNGYLQDLSKKKNAEFLNSKSKLIAALAQTTTEADFQKILNQATSIASSSSHHNS--EIEDEKGDNDYDLNDPFLDSQPI
        +KY F HA +K +K+WF +NGYLQD+ + KN +FLN KSKL+A LAQ TT+ADFQ++L    + ++SS   +S  + ++E+ D +YDL++PFLDSQP+
Subjt:  DKYKFSHAELKAVKQWFADNGYLQDLSKKKNAEFLNSKSKLIAALAQTTTEADFQKILNQATSIASSSSHHNS--EIEDEKGDNDYDLNDPFLDSQPI

A0A5A7SWC0 Uncharacterized protein1.9e-2053.7Show/hide
Query:  IVKILQIKWWDKYKFSHAELKAVKQWFADNGYLQDLSKKKNAEFLNSKSKLIAALAQTTTEADFQKILNQATSIASSSSHHNSEI--EDEKGDNDYDLND
        + K L+IK W+KY F HA +K +K+WFA+N YLQD+ ++KN EFLN KSKL+ ALAQ TT+ADFQ++L+ A + +SSS   +S I  ++E+ D +YDL+D
Subjt:  IVKILQIKWWDKYKFSHAELKAVKQWFADNGYLQDLSKKKNAEFLNSKSKLIAALAQTTTEADFQKILNQATSIASSSSHHNSEI--EDEKGDNDYDLND

Query:  PFLDSQPI
          LDSQP+
Subjt:  PFLDSQPI

A0A5A7U8A0 Uncharacterized protein5.3e-1537.31Show/hide
Query:  MSVDEYAMDLGFTPVNRPRTRSASIQIRESMESLTPPPRPSASLIRPT-VVTPMKPTVSPSTPSSSHQGSSIPTTFAEATNTYTYFKQIVKILQIKWWDK
        MS D+YAMDLGFT V R R+RS+SI+I    ES T PP+PS +LIRP+  V  M+   SP +PSS+ + S+ PTT+++A                     
Subjt:  MSVDEYAMDLGFTPVNRPRTRSASIQIRESMESLTPPPRPSASLIRPT-VVTPMKPTVSPSTPSSSHQGSSIPTTFAEATNTYTYFKQIVKILQIKWWDK

Query:  YKFSHAELKAVKQWFADNGYLQDLSKKKNAEFLNSKSKLIAALAQTTTEADFQKILNQATSIASSSSHHNSEI--EDEKGDNDYDLNDPFLDS
                                         + +SKL+AALAQ TT+ADFQ++L+   + +SSS   +S I  ++E+ D +YDL+DP+LDS
Subjt:  YKFSHAELKAVKQWFADNGYLQDLSKKKNAEFLNSKSKLIAALAQTTTEADFQKILNQATSIASSSSHHNSEI--EDEKGDNDYDLNDPFLDS

A0A5A7UZX0 Polyprotein2.2e-2150.81Show/hide
Query:  PPRPSASLIRPT-VVTPMKPTVSPSTPSSSHQGSSIPTTFAEA--------TNTYTYFKQIVKILQIKWWDKYKFSHAELKAVKQWFADNGYLQDLSKKK
        PPRPSA+LIR + +   M+P  S    SS+ + S+  TT+++         T +Y  +K ++K L+IKWW KY F HA +K +K+WFADNGYLQD+ ++K
Subjt:  PPRPSASLIRPT-VVTPMKPTVSPSTPSSSHQGSSIPTTFAEA--------TNTYTYFKQIVKILQIKWWDKYKFSHAELKAVKQWFADNGYLQDLSKKK

Query:  NAEFLNSKSKLIAALAQTTTEADF
        N EFLN KSKL+AALAQ TT+ADF
Subjt:  NAEFLNSKSKLIAALAQTTTEADF

A0A5D3BI61 Uncharacterized protein3.3e-2545.13Show/hide
Query:  MSVDEYAMDLGFTPVNRPRTRSASIQIRESMESLTPPPRPSASLIRP-TVVTPMKPTVSPSTPSSSHQGSSIPTTFAEATNTYTYFKQIVKILQIKWWDK
        MSVD+YAMDLG+T V + R++S+ I IR  MES T PPRPS +LI P   V  M+   S ++PSS+ + S++PTT+++A    T  KQ V  ++IK + +
Subjt:  MSVDEYAMDLGFTPVNRPRTRSASIQIRESMESLTPPPRPSASLIRP-TVVTPMKPTVSPSTPSSSHQGSSIPTTFAEATNTYTYFKQIVKILQIKWWDK

Query:  YKFSHAELKAVKQWFADNGYLQDLSKKKNAEFLNSKSKLIAALAQTTTEADFQKILNQATSIASSSSHHNSEI--EDEKGDNDYDLNDPFLDSQP
              +   ++  +  NG LQD+ ++KNA+FLN K K +AAL Q T +ADFQ++L+ A + +SSS    S I  ++E+ D +YDL+DPFLDSQP
Subjt:  YKFSHAELKAVKQWFADNGYLQDLSKKKNAEFLNSKSKLIAALAQTTTEADFQKILNQATSIASSSSHHNSEI--EDEKGDNDYDLNDPFLDSQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGTGGACGAATATGCAATGGACTTGGGTTTCACTCCAGTGAATCGCCCAAGGACCAGAAGTGCTTCGATTCAAATCAGAGAATCAATGGAGTCTTTAACTCCACC
ACCGAGGCCATCTGCCTCTCTCATTCGACCTACTGTCGTTACTCCAATGAAACCTACTGTCTCACCTTCTACTCCATCTTCATCTCATCAGGGATCATCAATCCCTACAA
CCTTTGCTGAAGCCACAAATACCTATACTTATTTCAAACAAATTGTTAAAATTCTTCAAATCAAATGGTGGGACAAGTATAAGTTCTCACACGCAGAACTCAAAGCCGTC
AAACAATGGTTCGCCGACAACGGCTACCTTCAAGACCTCTCCAAAAAGAAAAACGCTGAATTTCTAAATTCAAAATCAAAGCTGATAGCTGCTCTGGCGCAAACAACGAC
TGAAGCAGACTTTCAGAAAATTTTGAATCAAGCGACTTCAATTGCATCCTCATCTTCTCACCATAATTCTGAAATTGAAGACGAAAAAGGTGACAATGACTATGATCTCA
ATGATCCTTTCTTAGATTCACAACCCATCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAAGAATCATTCTTGATTTTCAGAGACGTCAACAGAGG
ACCAATCGTATTTTAATTAGGTTCCCTAAAATACCAATACATTGGCAAAATGCTAGAACTATTCTAGATCATACAGGGATTGAAAATGCATCAACGTTATGGGCATATGG
CCTTCCACTGCTATCCTCTGAGATCAGGAACGTAGTTGTGGGACAACTTGATCTTGAATTGGAAGCACACAAGAGAAGAGTTCTTCTCGGTGTTCTAGCCCCCACTCGGT
CTTGTCCTCGAAAAGTGGTTTACTATTTCATGGTTCGGTCTTATGAAAAGTCATTGCATAGGATATCCTCGCTCGCATGTCTACTGATGTGCGTCGTGTTGCTAATGCGC
AACAGCTTGCTTAAGTGCAAGTATACACTATCAAGTAATAAAGTGGAAAGTATTTCGGATATCGTACCCAAGGGAGATGGTGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCGTGGACGAATATGCAATGGACTTGGGTTTCACTCCAGTGAATCGCCCAAGGACCAGAAGTGCTTCGATTCAAATCAGAGAATCAATGGAGTCTTTAACTCCACC
ACCGAGGCCATCTGCCTCTCTCATTCGACCTACTGTCGTTACTCCAATGAAACCTACTGTCTCACCTTCTACTCCATCTTCATCTCATCAGGGATCATCAATCCCTACAA
CCTTTGCTGAAGCCACAAATACCTATACTTATTTCAAACAAATTGTTAAAATTCTTCAAATCAAATGGTGGGACAAGTATAAGTTCTCACACGCAGAACTCAAAGCCGTC
AAACAATGGTTCGCCGACAACGGCTACCTTCAAGACCTCTCCAAAAAGAAAAACGCTGAATTTCTAAATTCAAAATCAAAGCTGATAGCTGCTCTGGCGCAAACAACGAC
TGAAGCAGACTTTCAGAAAATTTTGAATCAAGCGACTTCAATTGCATCCTCATCTTCTCACCATAATTCTGAAATTGAAGACGAAAAAGGTGACAATGACTATGATCTCA
ATGATCCTTTCTTAGATTCACAACCCATCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAAGAATCATTCTTGATTTTCAGAGACGTCAACAGAGG
ACCAATCGTATTTTAATTAGGTTCCCTAAAATACCAATACATTGGCAAAATGCTAGAACTATTCTAGATCATACAGGGATTGAAAATGCATCAACGTTATGGGCATATGG
CCTTCCACTGCTATCCTCTGAGATCAGGAACGTAGTTGTGGGACAACTTGATCTTGAATTGGAAGCACACAAGAGAAGAGTTCTTCTCGGTGTTCTAGCCCCCACTCGGT
CTTGTCCTCGAAAAGTGGTTTACTATTTCATGGTTCGGTCTTATGAAAAGTCATTGCATAGGATATCCTCGCTCGCATGTCTACTGATGTGCGTCGTGTTGCTAATGCGC
AACAGCTTGCTTAAGTGCAAGTATACACTATCAAGTAATAAAGTGGAAAGTATTTCGGATATCGTACCCAAGGGAGATGGTGACTAG
Protein sequenceShow/hide protein sequence
MSVDEYAMDLGFTPVNRPRTRSASIQIRESMESLTPPPRPSASLIRPTVVTPMKPTVSPSTPSSSHQGSSIPTTFAEATNTYTYFKQIVKILQIKWWDKYKFSHAELKAV
KQWFADNGYLQDLSKKKNAEFLNSKSKLIAALAQTTTEADFQKILNQATSIASSSSHHNSEIEDEKGDNDYDLNDPFLDSQPIGEDQMVVFFVVAEQSRIILDFQRRQQR
TNRILIRFPKIPIHWQNARTILDHTGIENASTLWAYGLPLLSSEIRNVVVGQLDLELEAHKRRVLLGVLAPTRSCPRKVVYYFMVRSYEKSLHRISSLACLLMCVVLLMR
NSLLKCKYTLSSNKVESISDIVPKGDGD