; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018839 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018839
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold3:21332950..21334897
RNA-Seq ExpressionSpg018839
SyntenySpg018839
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]3.5e-1739.31Show/hide
Query:  MSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHG
        MSA E   SK+ E   KR +   R+   DK Q      R R  Q+D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++   R K +YCLFH DHG
Subjt:  MSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHG

Query:  HSTRNCVQLKDEIEALIRNGYLKEF------TTKAEADQRWPRQTRD--------DPGKDKAPTLRAHATARE
        H+T++C  LK+E+E LI  GYLKE+      T   E+D+   R+ R         + G+ + P +R    +RE
Subjt:  HSTRNCVQLKDEIEALIRNGYLKEF------TTKAEADQRWPRQTRD--------DPGKDKAPTLRAHATARE

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]9.8e-2041.04Show/hide
Query:  MSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHG
        MSA E   SK+ E + KR +   R+   DK Q      R R  Q+D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K++   R K +YCLFHRDHG
Subjt:  MSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHG

Query:  HSTRNCVQLKDEIEALIRNGYLKEF------TTKAEADQRWPRQTRD--------DPGKDKAPTLRAHATARE
        H+T++C  LK+E+E LIR GYLKE+      T   E+D+   R+ R         + G+ +   +R   T+RE
Subjt:  HSTRNCVQLKDEIEALIRNGYLKEF------TTKAEADQRWPRQTRD--------DPGKDKAPTLRAHATARE

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]7.5e-2041.03Show/hide
Query:  MSAEEL------LKSKKLEREHKRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCL
        MSAEE       L+ K+ +++ +R       S+ +K+ R+         Q+D  +KFE+YTPT++P EQ+LMEI++  LL  P  +K+ P+ R K +YCL
Subjt:  MSAEEL------LKSKKLEREHKRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCL

Query:  FHRDHGHSTRNCVQLKDEIEALIRNGYLKEFTTKAEADQRWPRQTRDDPGKDKAPT
        FHRDHGH+T +C  LK+E+E LIR GYLKE+    +A    P +  D    +K+PT
Subjt:  FHRDHGHSTRNCVQLKDEIEALIRNGYLKEFTTKAEADQRWPRQTRDDPGKDKAPT

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]2.0e-1745.11Show/hide
Query:  MSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHG
        MSA E   SK+ E + KR +   R+   DK Q      R R  Q+D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K     R K +YCLFHRDH 
Subjt:  MSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHG

Query:  HSTRNCVQLKDEIEALIRNGYLKEFTTKAEADQ
        H+T++   LK+E+E LIR GYL+E+  + +A Q
Subjt:  HSTRNCVQLKDEIEALIRNGYLKEFTTKAEADQ

XP_024042801.1 uncharacterized protein LOC112099618 [Citrus clementina]1.7e-1642.86Show/hide
Query:  KRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCVQLKDEIEAL
        KR    ++   K+K  R++  G      +    +F RYTP ++P+EQ+LM+IRN +LL  P+ +K  P+ RD+S+YC +HRDH H+  +C  LK+EI++L
Subjt:  KRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCVQLKDEIEAL

Query:  IRNGYLKEFTTK
        I+ GYLKEF  K
Subjt:  IRNGYLKEFTTK

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128051.7e-1739.31Show/hide
Query:  MSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHG
        MSA E   SK+ E   KR +   R+   DK Q      R R  Q+D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++   R K +YCLFH DHG
Subjt:  MSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHG

Query:  HSTRNCVQLKDEIEALIRNGYLKEF------TTKAEADQRWPRQTRD--------DPGKDKAPTLRAHATARE
        H+T++C  LK+E+E LI  GYLKE+      T   E+D+   R+ R         + G+ + P +R    +RE
Subjt:  HSTRNCVQLKDEIEALIRNGYLKEF------TTKAEADQRWPRQTRD--------DPGKDKAPTLRAHATARE

A0A6J1DWY0 uncharacterized protein LOC1110252934.7e-2041.04Show/hide
Query:  MSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHG
        MSA E   SK+ E + KR +   R+   DK Q      R R  Q+D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K++   R K +YCLFHRDHG
Subjt:  MSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHG

Query:  HSTRNCVQLKDEIEALIRNGYLKEF------TTKAEADQRWPRQTRD--------DPGKDKAPTLRAHATARE
        H+T++C  LK+E+E LIR GYLKE+      T   E+D+   R+ R         + G+ +   +R   T+RE
Subjt:  HSTRNCVQLKDEIEALIRNGYLKEF------TTKAEADQRWPRQTRD--------DPGKDKAPTLRAHATARE

A0A6J1DYL6 uncharacterized protein LOC1110257859.9e-1845.11Show/hide
Query:  MSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHG
        MSA E   SK+ E + KR +   R+   DK Q      R R  Q+D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K     R K +YCLFHRDH 
Subjt:  MSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHG

Query:  HSTRNCVQLKDEIEALIRNGYLKEFTTKAEADQ
        H+T++   LK+E+E LIR GYL+E+  + +A Q
Subjt:  HSTRNCVQLKDEIEALIRNGYLKEFTTKAEADQ

A0A6J1DZ52 uncharacterized protein LOC1110256123.6e-2041.03Show/hide
Query:  MSAEEL------LKSKKLEREHKRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCL
        MSAEE       L+ K+ +++ +R       S+ +K+ R+         Q+D  +KFE+YTPT++P EQ+LMEI++  LL  P  +K+ P+ R K +YCL
Subjt:  MSAEEL------LKSKKLEREHKRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCL

Query:  FHRDHGHSTRNCVQLKDEIEALIRNGYLKEFTTKAEADQRWPRQTRDDPGKDKAPT
        FHRDHGH+T +C  LK+E+E LIR GYLKE+    +A    P +  D    +K+PT
Subjt:  FHRDHGHSTRNCVQLKDEIEALIRNGYLKEFTTKAEADQRWPRQTRDDPGKDKAPT

A0A7N2N013 Ribonuclease H4.1e-1642.34Show/hide
Query:  MSAEELLKSKKLEREHKRPSSSDR--DSRKDKKQRIDDHGRGRPDQR--DYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFH
        M+AE+ L S++      RP   DR  DSR+D+ ++    G  R D+R      +F  +TP + P +Q+LM+I++   L  P KLKS+P  R + +YC FH
Subjt:  MSAEELLKSKKLEREHKRPSSSDR--DSRKDKKQRIDDHGRGRPDQR--DYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFH

Query:  RDHGHSTRNCVQLKDEIEALIRNGYLKEFTTKAEADQ
        RDHGH T +C  LK +IEALIR G L++F  K   DQ
Subjt:  RDHGHSTRNCVQLKDEIEALIRNGYLKEFTTKAEADQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGCAGAGGAGTTGCTTAAGTCAAAGAAGTTAGAACGTGAACACAAGAGGCCTTCTTCATCTGACCGCGACAGTAGGAAGGACAAAAAGCAGCGGATCGACGACCA
TGGCCGAGGCCGACCAGACCAAAGAGACTACTTGAAGAAGTTTGAAAGGTACACCCCTACTTCAATCCCACAGGAGCAGATCTTGATGGAGATAAGGAATACAAACCTGC
TCAACGCGCCCAGGAAGCTGAAGTCCAATCCTGACAACAGAGACAAGAGTCAGTATTGTCTCTTTCATCGAGATCATGGACATTCAACTAGGAACTGCGTTCAGCTAAAG
GACGAGATTGAAGCGCTGATTCGGAACGGATACCTGAAGGAGTTCACCACTAAGGCCGAGGCAGACCAGAGGTGGCCAAGGCAGACCAGAGATGACCCAGGCAAAGACAA
GGCTCCCACGCTTAGAGCCCACGCCACTGCTCGCGAGCCTGGACTACCAAGTCTACCTCACCTCAGAGCTCAAACACTTGCTCAAGCACTTCATATAAGTCAAGCTCACC
TGGCGGAGGCCGAGACCGAGCACCTCTTGCCAAAATCGAGCACCTCTTGCCGAGGCCGAGCACAAACTTTAAAGGGAGCTAAGTTTCAGGCTAACAGGGGCATGAGGCCG
ATGCCGAAGCCTAGCCTCTTCCCTCATTCTTCTTTTGCAGAAATTAACTTTTTGATGCAGGATCATGAGATCTTCCATTTTTCCTACATTCTACTTGTGGATAAGCCCTG
GATCCGGGATGATGCACTCCGAATGACCAAGTACGGGGGTCTCGCTGACCGGTCAGCGAGTCGGGGTCCAGGGGCGGCCTCTTCCCGAGGCCGAGGCCGACCCAACAAGC
TAAAAGGAGGATGGCAGTGCTCGGCCTCTTCCCAAGGCCGACCAGCACCACTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGCAGAGGAGTTGCTTAAGTCAAAGAAGTTAGAACGTGAACACAAGAGGCCTTCTTCATCTGACCGCGACAGTAGGAAGGACAAAAAGCAGCGGATCGACGACCA
TGGCCGAGGCCGACCAGACCAAAGAGACTACTTGAAGAAGTTTGAAAGGTACACCCCTACTTCAATCCCACAGGAGCAGATCTTGATGGAGATAAGGAATACAAACCTGC
TCAACGCGCCCAGGAAGCTGAAGTCCAATCCTGACAACAGAGACAAGAGTCAGTATTGTCTCTTTCATCGAGATCATGGACATTCAACTAGGAACTGCGTTCAGCTAAAG
GACGAGATTGAAGCGCTGATTCGGAACGGATACCTGAAGGAGTTCACCACTAAGGCCGAGGCAGACCAGAGGTGGCCAAGGCAGACCAGAGATGACCCAGGCAAAGACAA
GGCTCCCACGCTTAGAGCCCACGCCACTGCTCGCGAGCCTGGACTACCAAGTCTACCTCACCTCAGAGCTCAAACACTTGCTCAAGCACTTCATATAAGTCAAGCTCACC
TGGCGGAGGCCGAGACCGAGCACCTCTTGCCAAAATCGAGCACCTCTTGCCGAGGCCGAGCACAAACTTTAAAGGGAGCTAAGTTTCAGGCTAACAGGGGCATGAGGCCG
ATGCCGAAGCCTAGCCTCTTCCCTCATTCTTCTTTTGCAGAAATTAACTTTTTGATGCAGGATCATGAGATCTTCCATTTTTCCTACATTCTACTTGTGGATAAGCCCTG
GATCCGGGATGATGCACTCCGAATGACCAAGTACGGGGGTCTCGCTGACCGGTCAGCGAGTCGGGGTCCAGGGGCGGCCTCTTCCCGAGGCCGAGGCCGACCCAACAAGC
TAAAAGGAGGATGGCAGTGCTCGGCCTCTTCCCAAGGCCGACCAGCACCACTTTTGTAA
Protein sequenceShow/hide protein sequence
MSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRIDDHGRGRPDQRDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCVQLK
DEIEALIRNGYLKEFTTKAEADQRWPRQTRDDPGKDKAPTLRAHATAREPGLPSLPHLRAQTLAQALHISQAHLAEAETEHLLPKSSTSCRGRAQTLKGAKFQANRGMRP
MPKPSLFPHSSFAEINFLMQDHEIFHFSYILLVDKPWIRDDALRMTKYGGLADRSASRGPGAASSRGRGRPNKLKGGWQCSASSQGRPAPLL