CuGenDBv2

Gene ID	Spg018853
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transcription initiation factor IIE subunit beta
Genome location	scaffold3:21536762..21541489
RNA-Seq Expression	Spg018853
Synteny	Spg018853
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0005673 - transcription factor TFIIE complex (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR003166 - Transcription factor TFIIE beta subunit, DNA-binding domain IPR016656 - Transcription initiation factor TFIIE, beta subunit IPR040501 - TFA2, Winged helix domain 2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008452012.1 PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo]

1.5e-132

80.49

Show/hide

Query:  MALQEKLDRFKKQQERCQTTLTGIAA----SKSTPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDAC
        MALQE+LDRFKKQQERCQ+TL+GIAA    SKSTPKFTPAPA+SIARP APAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQA TPEQIN+AC
Subjt:  MALQEKLDRFKKQQERCQTTLTGIAA----SKSTPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRG
        YVDINSNKAVYDSLRNNPKVHYDGR FSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYP+VMEDLQ                               
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRG

Query:  ISFIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASS
                            ALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASS
Subjt:  ISFIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASS

Query:  KPKPKKKKQEISKRTKLTNAHLPELFKN
        KPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  KPKPKKKKQEISKRTKLTNAHLPELFKN

XP_011653191.1 general transcription factor IIE subunit 2 [Cucumis sativus]

1.4e-133

80.49

Show/hide

Query:  MALQEKLDRFKKQQERCQTTLTGIAA----SKSTPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDAC
        MALQE+LDRFKKQQERCQ+TL+GIAA    SKSTPKFTPAPA+SIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQA TPEQIN+AC
Subjt:  MALQEKLDRFKKQQERCQTTLTGIAA----SKSTPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRG
        YVDINSNKAVYDSLRNNPKVHYDGR FSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKDAYP+VMEDLQ                               
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRG

Query:  ISFIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASS
                            ALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASS
Subjt:  ISFIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASS

Query:  KPKPKKKKQEISKRTKLTNAHLPELFKN
        KPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  KPKPKKKKQEISKRTKLTNAHLPELFKN

XP_022136771.1 general transcription factor IIE subunit 2-like [Momordica charantia]

3.7e-131

79.75

Show/hide

Query:  MALQEKLDRFKKQQERCQTTLTGIAASK--STPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDACYV
        MALQ+KLDRFKKQQERCQTTLTGIAASK  STPKFTPAPA+   RPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETR AHTPEQIN+ACYV
Subjt:  MALQEKLDRFKKQQERCQTTLTGIAASK--STPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDACYV

Query:  DINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRGIS
        DINSNKAV+DSLRNNPKVHYDGR F+YKSKHDLKDK+QLLYLIRKFPEGIAVIDLKD+YPTVMEDLQ                                 
Subjt:  DINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRGIS

Query:  FIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKP
                          ALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKP
Subjt:  FIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKP

Query:  KPKKKKQEISKRTKLTNAHLPELFKN
        KPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  KPKKKKQEISKRTKLTNAHLPELFKN

XP_022984812.1 general transcription factor IIE subunit 2-like [Cucurbita maxima]

1.2e-129

78.9

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Query:  MALQEKLDRFKKQQERCQTTLTGIAASK---STPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDACY
        MALQEKLDRFK+QQERCQTTL+GIAASK   +TP+FTPAPA+S  RPPAPA+KFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQA TPEQIN+ACY
Subjt:  MALQEKLDRFKKQQERCQTTLTGIAASK---STPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDACY

Query:  VDINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRGI
        VDINSNKAV+DSLRNNPKVHYDGR FSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YP+VMEDLQ                                
Subjt:  VDINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRGI

Query:  SFIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSK
                           ALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSK
Subjt:  SFIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSK

Query:  PKPKKKKQEISKRTKLTNAHLPELFKN
        PKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  PKPKKKKQEISKRTKLTNAHLPELFKN

XP_038906431.1 general transcription factor IIE subunit 2-like [Benincasa hispida]

3.2e-130

79.88

Show/hide

Query:  MALQEKLDRFKKQQERCQTTLTGIA----ASKSTPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDAC
        MALQE+LDRFKKQQERCQTTL+GIA    ASKSTPKFTPAPA+S  RPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQA TPEQIN+AC
Subjt:  MALQEKLDRFKKQQERCQTTLTGIA----ASKSTPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRG
        YVDINSNKAV+DSLRNNPKVHYDGR FSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYP+VMEDLQ                               
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRG

Query:  ISFIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASS
                            ALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASS
Subjt:  ISFIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASS

Query:  KPKPKKKKQEISKRTKLTNAHLPELFKN
        KPK KKKKQEISKRTKLTNAHLPELFKN
Subjt:  KPKPKKKKQEISKRTKLTNAHLPELFKN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWU5 Transcription initiation factor IIE subunit beta

6.6e-134

80.49

Show/hide

Query:  MALQEKLDRFKKQQERCQTTLTGIAA----SKSTPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDAC
        MALQE+LDRFKKQQERCQ+TL+GIAA    SKSTPKFTPAPA+SIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQA TPEQIN+AC
Subjt:  MALQEKLDRFKKQQERCQTTLTGIAA----SKSTPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRG
        YVDINSNKAVYDSLRNNPKVHYDGR FSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKDAYP+VMEDLQ                               
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRG

Query:  ISFIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASS
                            ALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASS
Subjt:  ISFIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASS

Query:  KPKPKKKKQEISKRTKLTNAHLPELFKN
        KPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  KPKPKKKKQEISKRTKLTNAHLPELFKN

A0A1S3BS95 Transcription initiation factor IIE subunit beta

7.3e-133

80.49

Show/hide

Query:  MALQEKLDRFKKQQERCQTTLTGIAA----SKSTPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDAC
        MALQE+LDRFKKQQERCQ+TL+GIAA    SKSTPKFTPAPA+SIARP APAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQA TPEQIN+AC
Subjt:  MALQEKLDRFKKQQERCQTTLTGIAA----SKSTPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRG
        YVDINSNKAVYDSLRNNPKVHYDGR FSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYP+VMEDLQ                               
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRG

Query:  ISFIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASS
                            ALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASS
Subjt:  ISFIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASS

Query:  KPKPKKKKQEISKRTKLTNAHLPELFKN
        KPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  KPKPKKKKQEISKRTKLTNAHLPELFKN

A0A5A7TNR4 Transcription initiation factor IIE subunit beta

7.3e-133

80.49

Show/hide

Query:  MALQEKLDRFKKQQERCQTTLTGIAA----SKSTPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDAC
        MALQE+LDRFKKQQERCQ+TL+GIAA    SKSTPKFTPAPA+SIARP APAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQA TPEQIN+AC
Subjt:  MALQEKLDRFKKQQERCQTTLTGIAA----SKSTPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRG
        YVDINSNKAVYDSLRNNPKVHYDGR FSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYP+VMEDLQ                               
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRG

Query:  ISFIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASS
                            ALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASS
Subjt:  ISFIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASS

Query:  KPKPKKKKQEISKRTKLTNAHLPELFKN
        KPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  KPKPKKKKQEISKRTKLTNAHLPELFKN

A0A6J1C4F9 Transcription initiation factor IIE subunit beta

1.8e-131

79.75

Show/hide

Query:  MALQEKLDRFKKQQERCQTTLTGIAASK--STPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDACYV
        MALQ+KLDRFKKQQERCQTTLTGIAASK  STPKFTPAPA+   RPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETR AHTPEQIN+ACYV
Subjt:  MALQEKLDRFKKQQERCQTTLTGIAASK--STPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDACYV

Query:  DINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRGIS
        DINSNKAV+DSLRNNPKVHYDGR F+YKSKHDLKDK+QLLYLIRKFPEGIAVIDLKD+YPTVMEDLQ                                 
Subjt:  DINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRGIS

Query:  FIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKP
                          ALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKP
Subjt:  FIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKP

Query:  KPKKKKQEISKRTKLTNAHLPELFKN
        KPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  KPKKKKQEISKRTKLTNAHLPELFKN

A0A6J1J372 Transcription initiation factor IIE subunit beta

5.8e-130

78.9

Show/hide

Query:  MALQEKLDRFKKQQERCQTTLTGIAASK---STPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDACY
        MALQEKLDRFK+QQERCQTTL+GIAASK   +TP+FTPAPA+S  RPPAPA+KFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQA TPEQIN+ACY
Subjt:  MALQEKLDRFKKQQERCQTTLTGIAASK---STPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDACY

Query:  VDINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRGI
        VDINSNKAV+DSLRNNPKVHYDGR FSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YP+VMEDLQ                                
Subjt:  VDINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRGI

Query:  SFIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSK
                           ALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSK
Subjt:  SFIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSK

Query:  PKPKKKKQEISKRTKLTNAHLPELFKN
        PKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  PKPKKKKQEISKRTKLTNAHLPELFKN

SwissProt top hits

e value

%identity

Alignment

P79011 Transcription initiation factor IIE subunit beta

1.9e-05

24.22

Show/hide

Query:  AQIKRVIDLLLETRQAHTPEQINDACYVDINSNKAVYDSLRNNPKVHYDGR--SFSYKSKHDLKDKNQLLYLI--RKFPEGIAVIDLKDAYPTVMEDLQV
        +Q+   ++ L E  +  T E+I  A Y+       + + L+ N +++YD R  +F++K  H+++    LL  +  +K   G+++ +L+D +P V      
Subjt:  AQIKRVIDLLLETRQAHTPEQINDACYVDINSNKAVYDSLRNNPKVHYDGR--SFSYKSKHDLKDKNQLLYLI--RKFPEGIAVIDLKDAYPTVMEDLQV

Query:  CYLRILLCAFFLFLFYFVLNGKALYTNLRGISFIQSGKTKGKYEITVLRKALKASGQVWLL-SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDM
                                                     TV  + L+  G+V LL +  D    + + ND      VD + +Q++ EI +P   
Subjt:  CYLRILLCAFFLFLFYFVLNGKALYTNLRGISFIQSGKTKGKYEITVLRKALKASGQVWLL-SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDM

Query:  LDVEKDLQKNGMKPAT---NTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHL
        LD+  +L K G+KP +   +T KR  + Q      PK KK K   ++R K+TN HL
Subjt:  LDVEKDLQKNGMKPAT---NTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHL

Q54KJ8 General transcription factor IIE subunit 2

6.0e-07

22.39

Show/hide

Query:  FKKQQERCQTTLTGI--------AASKSTPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLL--LETRQAHTPEQINDACYVD
        FK+ Q +   TL  I        +A K  PK +    SS A   +     S  T        +++ P    +  +++ L  LE   A T E ++   ++ 
Subjt:  FKKQQERCQTTLTGI--------AASKSTPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLL--LETRQAHTPEQINDACYVD

Query:  INSNKAVYDSLRNNPKVHYDGRS-FSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRGIS
        I+    + + LRNN K+   G   FS+K K +++ +  +L L+  +P GI V +L ++Y     D+                                  
Subjt:  INSNKAVYDSLRNNPKVHYDGRS-FSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRGIS

Query:  FIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKP
                         K LK + Q++ +   +S  DI +PND R+++ +  +L  +++ I+LP +  D+EK+++  G+    +  +   +A+   S+K 
Subjt:  FIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKP

Query:  KPKKKKQEISKRTKLTNAHLPELFKN
        K ++KK    + TK+TN H+     N
Subjt:  KPKKKKQEISKRTKLTNAHLPELFKN

Arabidopsis top hits

e value

%identity

Alignment

AT4G20330.1 Transcription initiation factor TFIIE, beta subunit

1.1e-88

57.7

Show/hide

Query:  MALQEKLDRFKKQQERCQTTLTGIAASK----STPKFTPAPAS-SIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDA
        MAL+E+LD+F KQQ +CQ+TL+ IA+S+    S+ +  P PA+ +  +P A  VKFS+DTERLQ+IN+IRK+PVGAQIKRVIDLL E R A TPEQIN+ 
Subjt:  MALQEKLDRFKKQQERCQTTLTGIAASK----STPKFTPAPAS-SIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDA

Query:  CYVDINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLR
        C+VD+++NKAV+DSLR NPK HYDGR FSYK+ HD+ DKNQLL L+RK+ +GIAV+DLKDAYP VMEDL                               
Subjt:  CYVDINSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLR

Query:  GISFIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVA
                            KAL ASG ++LLSN  SQEDIAYPND + +IKVDD+ K LFR+I +P DMLDVEK+L K G+KPATNTA+RRA AQ H  
Subjt:  GISFIQSGKTKGKYEITVLRKALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVA

Query:  SSKPK-PKKKKQEISKRTKLTNAHLPELFKN
        S+KPK  KKKKQEISKRTKLTNAHLPELF+N
Subjt:  SSKPK-PKKKKQEISKRTKLTNAHLPELFKN

AT4G21010.1 Transcription initiation factor TFIIE, beta subunit

1.3e-70

49.39

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Query:  MALQEKLDRFKKQQERCQTTLTGIAASKSTPKFTPAPASSIA-RPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDACYVD
        MAL+E+LD+F KQQE+CQ+TL+ I++S++    +  PA++ + +P     KFS +T++LQHI +IR S VGAQ+K VIDLL +TR A+T EQIN+ACYVD
Subjt:  MALQEKLDRFKKQQERCQTTLTGIAASKSTPKFTPAPASSIA-RPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDACYVD

Query:  INSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRGISF
        +++NKAV+DSLR NPKVHYDGR FSYK+ H++KDK QLL  + K  + I V DLKDAYP VMEDL                                   
Subjt:  INSNKAVYDSLRNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRGISF

Query:  IQSGKTKGKYEITVLRKALKASGQV-WLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSK
                        K+LK+SG++ WLLSN DS+E   Y N+     K+DD+LK LFR+I +P DML+VEK+L K G+KPATN A+RRA  Q H  S+K
Subjt:  IQSGKTKGKYEITVLRKALKASGQV-WLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSK

Query:  PK-PKKKKQEISKRTKLTNAHLPELFKN
        PK  KKKK+EI+ RTKLTN+H+ ELF++
Subjt:  PK-PKKKKQEISKRTKLTNAHLPELFKN

Sequences

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CDS sequence

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ATGGCGTTGCAAGAAAAACTAGATAGGTTTAAGAAACAGCAAGAAAGATGTCAGACTACCTTGACTGGCATTGCTGCTTCCAAGTCTACACCCAAGTTTACGCCTGCACC
GGCTTCTTCCATTGCGAGACCTCCGGCTCCTGCTGTGAAATTTTCAAATGATACTGAGAGACTTCAACACATTAACAGCATAAGGAAATCCCCAGTTGGAGCTCAGATCA
AGAGGGTTATTGATCTGCTGCTGGAGACAAGACAAGCCCATACACCAGAGCAAATCAATGATGCATGTTATGTTGATATAAATTCCAACAAAGCTGTTTATGATAGTCTG
CGGAATAACCCAAAGGTGCACTATGATGGGAGGAGTTTCTCATACAAGTCCAAGCATGACCTGAAGGATAAGAATCAACTTCTTTACTTGATACGGAAATTTCCAGAAGG
CATTGCTGTCATTGATCTCAAGGATGCTTATCCAACCGTTATGGAAGACTTGCAAGTATGTTACTTGAGAATTCTTCTATGTGCTTTTTTTTTGTTTTTGTTTTATTTTG
TTTTGAATGGAAAAGCGCTATATACCAACTTGAGGGGGATTAGCTTTATACAATCAGGAAAGACCAAGGGAAAGTACGAAATTACTGTTTTACGTAAGGCCCTAAAAGCA
TCAGGACAGGTTTGGCTTCTCTCAAACTTCGATTCACAAGAAGATATTGCATACCCAAACGACCCAAGAATTCAAATCAAGGTAGACGATGATCTGAAGCAACTCTTTCG
AGAGATCGAATTACCTCGTGACATGCTCGATGTCGAAAAGGATCTTCAGAAGAATGGGATGAAGCCTGCAACCAACACTGCAAAGAGGCGAGCAAATGCACAACACGTGG
CATCCTCGAAGCCGAAGCCCAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACCAAGCTCACCAATGCACATCTTCCCGAACTCTTTAAAAATTAG

mRNA sequence

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Protein sequence

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MALQEKLDRFKKQQERCQTTLTGIAASKSTPKFTPAPASSIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAHTPEQINDACYVDINSNKAVYDSL
RNNPKVHYDGRSFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPTVMEDLQVCYLRILLCAFFLFLFYFVLNGKALYTNLRGISFIQSGKTKGKYEITVLRKALKA
SGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

Spg018853 (gene) of Sponge gourd (cylindrica) v1 genome