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Spg018855 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018855
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold3:21154376..21160525
RNA-Seq ExpressionSpg018855
SyntenySpg018855
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4349983.1 hypothetical protein G4B88_024494 [Cannabis sativa]1.1e-0730.77Show/hide
Query:  DWAHSRWSPSMGQMLKVNMDTTFHSEMGKARGGLVLRDSSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDV
        D  H  W       LK+NMD    S   K RGG+++RD +G V+ AT F+ +       AEGWV++EG+K     G    HIE+    ++  ++   +++
Subjt:  DWAHSRWSPSMGQMLKVNMDTTFHSEMGKARGGLVLRDSSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDV

Query:  SKMGDPMSSVRYIAKKL
        S  G  ++ +R +   L
Subjt:  SKMGDPMSSVRYIAKKL

KAF4402566.1 hypothetical protein G4B88_012351 [Cannabis sativa]2.5e-0730.36Show/hide
Query:  WSPSMGQMLKVNMDTTFHSEMGKARGGLVLRDSSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDVSKMGDP
        W P     LK+N D    +   + RGG ++ D SG VL AT FN +      +AEGWV+ EG+K     G    HIE+    ++  ++   +++S  G  
Subjt:  WSPSMGQMLKVNMDTTFHSEMGKARGGLVLRDSSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDVSKMGDP

Query:  MSSVRYIAKKLV
        ++++R +   L+
Subjt:  MSSVRYIAKKLV

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]1.1e-1032.6Show/hide
Query:  EGFGVFLWAIGNFRNRCVWFG----VTVNMAPDFGLHAAYCISCFRRANICVGTFLLSGYLFDWAHSRWSPSMGQMLKVNMDTTFHSEMGKARGGLVLRD
        E   VFLWAI N RN+ ++      + VNM      +     S     ++     LL G       S W P +    KVN+D  F      A   +++RD
Subjt:  EGFGVFLWAIGNFRNRCVWFG----VTVNMAPDFGLHAAYCISCFRRANICVGTFLLSGYLFDWAHSRWSPSMGQMLKVNMDTTFHSEMGKARGGLVLRD

Query:  SSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDVSKMGDPMSSVRYIAKKLVI
        S+ +VL++    + +   V LAE     EGV L ++ G   F IE  SS+V +L+R DC+D S++G   SS+R+I   L I
Subjt:  SSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDVSKMGDPMSSVRYIAKKLVI

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]1.2e-0936.52Show/hide
Query:  WSPSMGQMLKVNMDTTFHSEMGKARGGLVLRDSSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDVSKMGDP
        W P    +LKVN+D  F  E   A  G+++RDS+G V +     L     VD  EG+ V+EG+ L V+ GF  F IE  S R+ +L+  DC D S++G  
Subjt:  WSPSMGQMLKVNMDTTFHSEMGKARGGLVLRDSSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDVSKMGDP

Query:  MSSVRYIAKKLVIRV
         S ++        RV
Subjt:  MSSVRYIAKKLVIRV

XP_030509082.1 uncharacterized protein LOC115723746 [Cannabis sativa]1.5e-0730.63Show/hide
Query:  WSPSMGQMLKVNMDTTFHSEMGKARGGLVLRDSSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDVSKMGDP
        W P     LK+N D    +   +  GG+++RD +G VL AT FN +      +AEGWV+ EG+K     GF   HIE+    ++  ++   +++S  G  
Subjt:  WSPSMGQMLKVNMDTTFHSEMGKARGGLVLRDSSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDVSKMGDP

Query:  MSSVRYIAKKL
        ++++R +   L
Subjt:  MSSVRYIAKKL

TrEMBL top hitse value%identityAlignment
A0A6J1C467 uncharacterized protein LOC1110077755.3e-1132.6Show/hide
Query:  EGFGVFLWAIGNFRNRCVWFG----VTVNMAPDFGLHAAYCISCFRRANICVGTFLLSGYLFDWAHSRWSPSMGQMLKVNMDTTFHSEMGKARGGLVLRD
        E   VFLWAI N RN+ ++      + VNM      +     S     ++     LL G       S W P +    KVN+D  F      A   +++RD
Subjt:  EGFGVFLWAIGNFRNRCVWFG----VTVNMAPDFGLHAAYCISCFRRANICVGTFLLSGYLFDWAHSRWSPSMGQMLKVNMDTTFHSEMGKARGGLVLRD

Query:  SSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDVSKMGDPMSSVRYIAKKLVI
        S+ +VL++    + +   V LAE     EGV L ++ G   F IE  SS+V +L+R DC+D S++G   SS+R+I   L I
Subjt:  SSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDVSKMGDPMSSVRYIAKKLVI

A0A6J1DBJ7 uncharacterized protein LOC1110189735.9e-1036.52Show/hide
Query:  WSPSMGQMLKVNMDTTFHSEMGKARGGLVLRDSSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDVSKMGDP
        W P    +LKVN+D  F  E   A  G+++RDS+G V +     L     VD  EG+ V+EG+ L V+ GF  F IE  S R+ +L+  DC D S++G  
Subjt:  WSPSMGQMLKVNMDTTFHSEMGKARGGLVLRDSSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDVSKMGDP

Query:  MSSVRYIAKKLVIRV
         S ++        RV
Subjt:  MSSVRYIAKKLVIRV

A0A7J6DV75 RNase H domain-containing protein5.5e-0830.77Show/hide
Query:  DWAHSRWSPSMGQMLKVNMDTTFHSEMGKARGGLVLRDSSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDV
        D  H  W       LK+NMD    S   K RGG+++RD +G V+ AT F+ +       AEGWV++EG+K     G    HIE+    ++  ++   +++
Subjt:  DWAHSRWSPSMGQMLKVNMDTTFHSEMGKARGGLVLRDSSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDV

Query:  SKMGDPMSSVRYIAKKL
        S  G  ++ +R +   L
Subjt:  SKMGDPMSSVRYIAKKL

A0A7J6I5F8 Uncharacterized protein1.2e-0730.36Show/hide
Query:  WSPSMGQMLKVNMDTTFHSEMGKARGGLVLRDSSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDVSKMGDP
        W P     LK+N D    +   + RGG ++ D SG VL AT FN +      +AEGWV+ EG+K     G    HIE+    ++  ++   +++S  G  
Subjt:  WSPSMGQMLKVNMDTTFHSEMGKARGGLVLRDSSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDVSKMGDP

Query:  MSSVRYIAKKLV
        ++++R +   L+
Subjt:  MSSVRYIAKKLV

A0A803NTC1 Uncharacterized protein5.5e-0830.63Show/hide
Query:  WSPSMGQMLKVNMDTTFHSEMGKARGGLVLRDSSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDVSKMGDP
        W P +   LK+N D    S   K  GG+++RD +G V+ AT F+ +       AEGWV++EG+K     G    HIE+    ++  ++   D++S  G  
Subjt:  WSPSMGQMLKVNMDTTFHSEMGKARGGLVLRDSSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDVSKMGDP

Query:  MSSVRYIAKKL
        ++++R +   L
Subjt:  MSSVRYIAKKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAAAGCTTCGGGCGCATGCATATCCCAAGGAGTTAATTGTTCCCGTATGTGTGTTTTATACCATCGTTTTGTGGAAGATTGTGTTCGCTTATTCTGGCAATGT
AAGGAGGTGCGAAGGTTTTGGGGTGTTTCTTTGGGCAATCGGGAATTTTCGAAATCGGTGTGTCTGGTTTGGTGTGACTGTGAATATGGCCCCTGATTTTGGTTTGCATG
CTGCATATTGTATCTCTTGTTTCAGGAGAGCGAACATATGTGTTGGGACTTTCTTGTTGAGTGGTTATTTATTCGATTGGGCTCATAGCAGGTGGTCTCCTTCCATGGGT
CAGATGCTGAAGGTGAATATGGATACGACTTTTCATTCCGAGATGGGTAAAGCTAGGGGAGGTTTAGTTTTACGCGATTCCAGTGGCCATGTCTTGATGGCTACTAATTT
CAACCTCCTGAACTACTGGCATGTGGATTTGGCTGAAGGCTGGGTTGTGTTTGAGGGTGTGAAGCTAATTGTCCAACTGGGTTTTCGTGATTTTCATATTGAGTTGTATT
CAAGTCGTGTTATTCATCTTATGCGAGGGGATTGTGATGATGTTTCTAAAATGGGCGATCCGATGTCTAGTGTAAGGTACATAGCAAAGAAACTAGTCATACGCGTGCAG
AGCAACCGCCAAAGGGCAAAGCACCCCGACACACGACCCAAAGCCTATCCTTCAGCTCGCCGCTGCCTTAAGCTCACCGCCGCCGACCGTCGCGCCTCCGCCTCTGCCGT
TCGCCACGCCGCCGCCACTCGTCGACGATCCCCACGCGGCTGTCGCCGCTTACCTCACATTGTCGCCGCCGTGAGTTCCTTTGCAACCAAACAGCCACACGTCGCTACTG
TCTTCAGACCCGATCACGCCGCCCTCCATTCACGCTCGCAGCCATCTGCTCTGCCATCGTCGTCGCCGCGTTGTCCAAGTGGTGCAGACAACAACGTTTTTGGTACAGAA
CATGAGACATCGTTTATGTATGGATGGAATATGGAACGTTGGATATTGTGTGTTCTGGCGATATTAAATCTTCTGGTTATGAGAGTGTTCGTCTATATTGAATGCTCTGA
ATGTTTTGTGTTGTTAAGTATAGAATATTCTGCTTGGGTAAACCTTGAATGCTCTGAATGCACTACGTTGGGTACGAGCAATGACATACGGAGCGCGTGGCGGACTGCTG
CCGACGAGCCATGGATTTCCTTAGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAAAAGCTTCGGGCGCATGCATATCCCAAGGAGTTAATTGTTCCCGTATGTGTGTTTTATACCATCGTTTTGTGGAAGATTGTGTTCGCTTATTCTGGCAATGT
AAGGAGGTGCGAAGGTTTTGGGGTGTTTCTTTGGGCAATCGGGAATTTTCGAAATCGGTGTGTCTGGTTTGGTGTGACTGTGAATATGGCCCCTGATTTTGGTTTGCATG
CTGCATATTGTATCTCTTGTTTCAGGAGAGCGAACATATGTGTTGGGACTTTCTTGTTGAGTGGTTATTTATTCGATTGGGCTCATAGCAGGTGGTCTCCTTCCATGGGT
CAGATGCTGAAGGTGAATATGGATACGACTTTTCATTCCGAGATGGGTAAAGCTAGGGGAGGTTTAGTTTTACGCGATTCCAGTGGCCATGTCTTGATGGCTACTAATTT
CAACCTCCTGAACTACTGGCATGTGGATTTGGCTGAAGGCTGGGTTGTGTTTGAGGGTGTGAAGCTAATTGTCCAACTGGGTTTTCGTGATTTTCATATTGAGTTGTATT
CAAGTCGTGTTATTCATCTTATGCGAGGGGATTGTGATGATGTTTCTAAAATGGGCGATCCGATGTCTAGTGTAAGGTACATAGCAAAGAAACTAGTCATACGCGTGCAG
AGCAACCGCCAAAGGGCAAAGCACCCCGACACACGACCCAAAGCCTATCCTTCAGCTCGCCGCTGCCTTAAGCTCACCGCCGCCGACCGTCGCGCCTCCGCCTCTGCCGT
TCGCCACGCCGCCGCCACTCGTCGACGATCCCCACGCGGCTGTCGCCGCTTACCTCACATTGTCGCCGCCGTGAGTTCCTTTGCAACCAAACAGCCACACGTCGCTACTG
TCTTCAGACCCGATCACGCCGCCCTCCATTCACGCTCGCAGCCATCTGCTCTGCCATCGTCGTCGCCGCGTTGTCCAAGTGGTGCAGACAACAACGTTTTTGGTACAGAA
CATGAGACATCGTTTATGTATGGATGGAATATGGAACGTTGGATATTGTGTGTTCTGGCGATATTAAATCTTCTGGTTATGAGAGTGTTCGTCTATATTGAATGCTCTGA
ATGTTTTGTGTTGTTAAGTATAGAATATTCTGCTTGGGTAAACCTTGAATGCTCTGAATGCACTACGTTGGGTACGAGCAATGACATACGGAGCGCGTGGCGGACTGCTG
CCGACGAGCCATGGATTTCCTTAGGATAG
Protein sequenceShow/hide protein sequence
MAEKLRAHAYPKELIVPVCVFYTIVLWKIVFAYSGNVRRCEGFGVFLWAIGNFRNRCVWFGVTVNMAPDFGLHAAYCISCFRRANICVGTFLLSGYLFDWAHSRWSPSMG
QMLKVNMDTTFHSEMGKARGGLVLRDSSGHVLMATNFNLLNYWHVDLAEGWVVFEGVKLIVQLGFRDFHIELYSSRVIHLMRGDCDDVSKMGDPMSSVRYIAKKLVIRVQ
SNRQRAKHPDTRPKAYPSARRCLKLTAADRRASASAVRHAAATRRRSPRGCRRLPHIVAAVSSFATKQPHVATVFRPDHAALHSRSQPSALPSSSPRCPSGADNNVFGTE
HETSFMYGWNMERWILCVLAILNLLVMRVFVYIECSECFVLLSIEYSAWVNLECSECTTLGTSNDIRSAWRTAADEPWISLG