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Spg018865 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018865
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold3:21910754..21911899
RNA-Seq ExpressionSpg018865
SyntenySpg018865
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]6.7e-1552.88Show/hide
Query:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQ---EGQRVSL-------EEDDVRWLHAIFRTELPGGPGGA
        MT+ILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SS+ L+   E   V +        EDDV WLHA+FR +  GGPGG 
Subjt:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQ---EGQRVSL-------EEDDVRWLHAIFRTELPGGPGGA

Query:  QSPP
          PP
Subjt:  QSPP

TYK00848.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-0952.81Show/hide
Query:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQEGQRVSLEEDDVRWLHAIFRTELPGGPGG
        MT+ILS RLYG VCTQ                 VEIEL VPDTLPTSAES R++S S         +  DDV WLHAIFR +  GGPGG
Subjt:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQEGQRVSLEEDDVRWLHAIFRTELPGGPGG

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]1.7e-1047.66Show/hide
Query:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSS-------SMLQEGQRVSLEE------DDVRWLHAIFRTELPGGP
        MT+ILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS ++SS       S L     +S+E       DDV WLHA+FR +  GGP
Subjt:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSS-------SMLQEGQRVSLEE------DDVRWLHAIFRTELPGGP

Query:  GGAQSPP
         G   PP
Subjt:  GGAQSPP

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]8.5e-1050.56Show/hide
Query:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQEGQRVSLEEDDVRWLHAIFRTELPGGPGG
        MT+ILS RLYGTVCTQ                 VEIELPV DTLPTSAESS ++S S         +  DDV WLH++FR +   GPGG
Subjt:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQEGQRVSLEEDDVRWLHAIFRTELPGGPGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]6.7e-1552.88Show/hide
Query:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQ---EGQRVSL-------EEDDVRWLHAIFRTELPGGPGGA
        MT+ILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SS+ L+   E   V +        EDDV WLHA+FR +  GGPGG 
Subjt:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQ---EGQRVSL-------EEDDVRWLHAIFRTELPGGPGGA

Query:  QSPP
          PP
Subjt:  QSPP

TrEMBL top hitse value%identityAlignment
A0A5A7VMG9 Reverse transcriptase3.3e-1552.88Show/hide
Query:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQ---EGQRVSL-------EEDDVRWLHAIFRTELPGGPGGA
        MT+ILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SS+ L+   E   V +        EDDV WLHA+FR +  GGPGG 
Subjt:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQ---EGQRVSL-------EEDDVRWLHAIFRTELPGGPGGA

Query:  QSPP
          PP
Subjt:  QSPP

A0A5D3BMJ4 Retrotrans_gag domain-containing protein8.3e-1147.66Show/hide
Query:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSS-------SMLQEGQRVSLEE------DDVRWLHAIFRTELPGGP
        MT+ILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS ++SS       S L     +S+E       DDV WLHA+FR +  GGP
Subjt:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSS-------SMLQEGQRVSLEE------DDVRWLHAIFRTELPGGP

Query:  GGAQSPP
         G   PP
Subjt:  GGAQSPP

A0A5D3BP54 Gag/pol protein5.4e-1052.81Show/hide
Query:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQEGQRVSLEEDDVRWLHAIFRTELPGGPGG
        MT+ILS RLYG VCTQ                 VEIEL VPDTLPTSAES R++S S         +  DDV WLHAIFR +  GGPGG
Subjt:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQEGQRVSLEEDDVRWLHAIFRTELPGGPGG

A0A5D3CU23 Retrotrans_gag domain-containing protein4.1e-1050.56Show/hide
Query:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQEGQRVSLEEDDVRWLHAIFRTELPGGPGG
        MT+ILS RLYGTVCTQ                 VEIELPV DTLPTSAESS ++S S         +  DDV WLH++FR +   GPGG
Subjt:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQEGQRVSLEEDDVRWLHAIFRTELPGGPGG

A0A5D3DX39 Reverse transcriptase3.3e-1552.88Show/hide
Query:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQ---EGQRVSL-------EEDDVRWLHAIFRTELPGGPGGA
        MT+ILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SS+ L+   E   V +        EDDV WLHA+FR +  GGPGG 
Subjt:  MTKILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSMLQ---EGQRVSL-------EEDDVRWLHAIFRTELPGGPGGA

Query:  QSPP
          PP
Subjt:  QSPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTTCAATGTTACAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTGAGTTACCAGGTGGTCCGGGAGGGGCAC
AATCTCCGCCTGAACCTGCTGCTCTTGACCGTTCCCTTGTTCCAACACATCCTCTGCTTGCTTTTCCTGAATTTCCCTCTGAACTTCAGCTGCTTGATCACCCTGCTCTG
TATTTTTCCCCTCTTCTTGTTCCTTCGACTTCTCTCCTCCAGCCGCTACTTCAGGTTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTAAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTTCAATGTTACAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTGAGTTACCAGGTGGTCCGGGAGGGGCAC
AATCTCCGCCTGAACCTGCTGCTCTTGACCGTTCCCTTGTTCCAACACATCCTCTGCTTGCTTTTCCTGAATTTCCCTCTGAACTTCAGCTGCTTGATCACCCTGCTCTG
TATTTTTCCCCTCTTCTTGTTCCTTCGACTTCTCTCCTCCAGCCGCTACTTCAGGTTCTTTAG
Protein sequenceShow/hide protein sequence
MTKILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSSMLQEGQRVSLEEDDVRWLHAIFRTELPGGPGGAQSPPEPAALDRSLVPTHPLLAFPEFPSELQLLDHPAL
YFSPLLVPSTSLLQPLLQVL