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Spg018881 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018881
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:21878448..21880469
RNA-Seq ExpressionSpg018881
SyntenySpg018881
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.5e-1753.77Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEEDDVRWLHAIFRTKLAGG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ NTW+ELY ESV+    +     + V +   +      G    +  DDV WLHA+FR K A  
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEEDDVRWLHAIFRTKLAGG

Query:  LGGGVT
         G  VT
Subjt:  LGGGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]4.5e-1952.46Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+S+TW+ELY+E   +V+V +      VR                  E
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE

Query:  DDVRWLHAIFRTKLAGGLGGGV
        DDV WLHA+FR K AGG GGGV
Subjt:  DDVRWLHAIFRTKLAGGLGGGV

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.1e-2050.72Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+S+TW+ELY+ESV+    +L  +PS VRA   VC    EG    +  
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE

Query:  DDVRWLHAIFRTKLAGGLGGGVTEGSKRGMVDEMIDEK
        DDV WLHA+FR K AGG  GGVT        D + +EK
Subjt:  DDVRWLHAIFRTKLAGGLGGGVTEGSKRGMVDEMIDEK

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-1761.11Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVT
        VEIELP+PDTLPTSAESS S+S+TW+ELY ESV+    +L  +PS  RA   VC    EG    +  DDV WLHAIFR K AGG GGGVT
Subjt:  VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]4.5e-1952.46Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+S+TW+ELY+E   +V+V +      VR                  E
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE

Query:  DDVRWLHAIFRTKLAGGLGGGV
        DDV WLHA+FR K AGG GGGV
Subjt:  DDVRWLHAIFRTKLAGGLGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein2.7e-1761.11Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVT
        VEIELP+PDTLPTSAESS S+S+TW+ELY ESV+    +L  +PS  RA   VC    EG    +  DDV WLHAIFR K AGG GGGVT
Subjt:  VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVT

A0A5A7V638 Uncharacterized protein7.1e-1853.77Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEEDDVRWLHAIFRTKLAGG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ NTW+ELY ESV+    +     + V +   +      G    +  DDV WLHA+FR K A  
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEEDDVRWLHAIFRTKLAGG

Query:  LGGGVT
         G  VT
Subjt:  LGGGVT

A0A5A7VMG9 Reverse transcriptase2.2e-1952.46Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+S+TW+ELY+E   +V+V +      VR                  E
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE

Query:  DDVRWLHAIFRTKLAGGLGGGV
        DDV WLHA+FR K AGG GGGV
Subjt:  DDVRWLHAIFRTKLAGGLGGGV

A0A5D3CCC7 DNA/RNA polymerases superfamily protein1.5e-2050.72Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+S+TW+ELY+ESV+    +L  +PS VRA   VC    EG    +  
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE

Query:  DDVRWLHAIFRTKLAGGLGGGVTEGSKRGMVDEMIDEK
        DDV WLHA+FR K AGG  GGVT        D + +EK
Subjt:  DDVRWLHAIFRTKLAGGLGGGVTEGSKRGMVDEMIDEK

A0A5D3DX39 Reverse transcriptase2.2e-1952.46Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+S+TW+ELY+E   +V+V +      VR                  E
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEE

Query:  DDVRWLHAIFRTKLAGGLGGGV
        DDV WLHA+FR K AGG GGGV
Subjt:  DDVRWLHAIFRTKLAGGLGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAG
CTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTATTATCCGAACCAAGTTATGTCAGGGCGACACCTCGTGTTTGTTCTACGTTTC
AGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCATGCTATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGCGGTGTGACAGAAGGCTCCAAA
AGAGGAATGGTTGATGAAATGATTGATGAGAAAAATGGGCACCAAGGGAGAGTTGAAGCTGGAATTCCCCAAAAAAGCGACCGCATTTATGGGAAGGCAAAATGGAAATG
CGACTGCATTTCTGGAAAACAGAGGTCGTTCCGAGTCGCACGCGAGTCGTTGTTGGCGAGTCTTCTTCGCACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAG
CTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTATTATCCGAACCAAGTTATGTCAGGGCGACACCTCGTGTTTGTTCTACGTTTC
AGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCATGCTATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGCGGTGTGACAGAAGGCTCCAAA
AGAGGAATGGTTGATGAAATGATTGATGAGAAAAATGGGCACCAAGGGAGAGTTGAAGCTGGAATTCCCCAAAAAAGCGACCGCATTTATGGGAAGGCAAAATGGAAATG
CGACTGCATTTCTGGAAAACAGAGGTCGTTCCGAGTCGCACGCGAGTCGTTGTTGGCGAGTCTTCTTCGCACCTAA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLLLSEPSYVRATPRVCSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTEGSK
RGMVDEMIDEKNGHQGRVEAGIPQKSDRIYGKAKWKCDCISGKQRSFRVARESLLASLLRT