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Spg018886 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018886
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:21848311..21849949
RNA-Seq ExpressionSpg018886
SyntenySpg018886
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]2.4e-1853.23Show/hide
Query:  PRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPT----QRRSVMLVEIELLVPDTL
        PRGNR  LQT E+ KT             PL TLSVL DNDAVVSAG+APLR+               +RW  R  PT    +  S  LVEIEL VPD L
Subjt:  PRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPT----QRRSVMLVEIELLVPDTL

Query:  PTSAESSRSSSSTWVELYIESVYI
        PTSAESSRS+SSTW+ELY ESV++
Subjt:  PTSAESSRSSSSTWVELYIESVYI

KAA0041324.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.3e-1956.48Show/hide
Query:  VVCVRGISGQIGWESRFHFFRPRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPTQ
        VV  RG+S  I  ES  H  RPR                        GYI LLTLSVLRDN+ VVS  R PL KDDGSAGR PLHRRTSKRWLY ACPTQ
Subjt:  VVCVRGISGQIGWESRFHFFRPRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPTQ

Query:  RRSVMLVE
        R  VMLV+
Subjt:  RRSVMLVE

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.2e-2565.81Show/hide
Query:  PRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPTQRRSVML----------VEIEL
        PRGNRS LQT EL KT              L TLSVLRDNDAVVSAG     KDDG+A RAPLHRRTSKRWLY ACPT RRSVML          VEIEL
Subjt:  PRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPTQRRSVML----------VEIEL

Query:  LVPDTLPTSAESSRSSS
         VPDTLPTSAESS S+S
Subjt:  LVPDTLPTSAESSRSSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.2e-2565.81Show/hide
Query:  PRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPTQRRSVML----------VEIEL
        PRGNRS LQT EL KT              L TLSVLRDNDAVVSAG     KDDG+A RAPLHRRTSKRWLY ACPT RRSVML          VEIEL
Subjt:  PRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPTQRRSVML----------VEIEL

Query:  LVPDTLPTSAESSRSSS
         VPDTLPTSAESS S+S
Subjt:  LVPDTLPTSAESSRSSS

TYK02787.1 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa]6.4e-1955.56Show/hide
Query:  VVCVRGISGQIGWESRFHFFRPRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPTQ
        VV  RG+S  I  ES  H  R                     YRVHT YI LLTLSVLRDN+ ++S  R PL KDDGSAGR PLHRRTSKRWLY AC TQ
Subjt:  VVCVRGISGQIGWESRFHFFRPRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPTQ

Query:  RRSVMLVE
        R  VMLV+
Subjt:  RRSVMLVE

TrEMBL top hitse value%identityAlignment
A0A5A7TCY8 DNA/RNA polymerases superfamily protein4.0e-1956.48Show/hide
Query:  VVCVRGISGQIGWESRFHFFRPRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPTQ
        VV  RG+S  I  ES  H  RPR                        GYI LLTLSVLRDN+ VVS  R PL KDDGSAGR PLHRRTSKRWLY ACPTQ
Subjt:  VVCVRGISGQIGWESRFHFFRPRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPTQ

Query:  RRSVMLVE
        R  VMLV+
Subjt:  RRSVMLVE

A0A5A7VGQ5 Uncharacterized protein5.8e-2665.81Show/hide
Query:  PRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPTQRRSVML----------VEIEL
        PRGNRS LQT EL KT              L TLSVLRDNDAVVSAG     KDDG+A RAPLHRRTSKRWLY ACPT RRSVML          VEIEL
Subjt:  PRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPTQRRSVML----------VEIEL

Query:  LVPDTLPTSAESSRSSS
         VPDTLPTSAESS S+S
Subjt:  LVPDTLPTSAESSRSSS

A0A5D3BG85 Uncharacterized protein5.8e-2665.81Show/hide
Query:  PRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPTQRRSVML----------VEIEL
        PRGNRS LQT EL KT              L TLSVLRDNDAVVSAG     KDDG+A RAPLHRRTSKRWLY ACPT RRSVML          VEIEL
Subjt:  PRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPTQRRSVML----------VEIEL

Query:  LVPDTLPTSAESSRSSS
         VPDTLPTSAESS S+S
Subjt:  LVPDTLPTSAESSRSSS

A0A5D3BTJ5 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein3.1e-1955.56Show/hide
Query:  VVCVRGISGQIGWESRFHFFRPRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPTQ
        VV  RG+S  I  ES  H  R                     YRVHT YI LLTLSVLRDN+ ++S  R PL KDDGSAGR PLHRRTSKRWLY AC TQ
Subjt:  VVCVRGISGQIGWESRFHFFRPRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPTQ

Query:  RRSVMLVE
        R  VMLV+
Subjt:  RRSVMLVE

A0A5D3BTP3 Reverse transcriptase1.2e-1853.23Show/hide
Query:  PRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPT----QRRSVMLVEIELLVPDTL
        PRGNR  LQT E+ KT             PL TLSVL DNDAVVSAG+APLR+               +RW  R  PT    +  S  LVEIEL VPD L
Subjt:  PRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLRKDDGSAGRAPLHRRTSKRWLYRACPT----QRRSVMLVEIELLVPDTL

Query:  PTSAESSRSSSSTWVELYIESVYI
        PTSAESSRS+SSTW+ELY ESV++
Subjt:  PTSAESSRSSSSTWVELYIESVYI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCATAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGAGAAAGATAAAGGGCAGCAGAGAACCTCG
AATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCCCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAG
CTAAGACGCCTGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCA
CTACGAAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACCGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGA
GATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTCTATATTGTAAATGTTT
TGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCATAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGAGAAAGATAAAGGGCAGCAGAGAACCTCG
AATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCCCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAG
CTAAGACGCCTGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCA
CTACGAAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACCGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGA
GATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTCTATATTGTAAATGTTT
TGTAA
Protein sequenceShow/hide protein sequence
MRSLWFLKWKTEHRIFVQTRRISGVLWRKIKGSREPRICVVCVRGISGQIGWESRFHFFRPRGNRSGLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAP
LRKDDGSAGRAPLHRRTSKRWLYRACPTQRRSVMLVEIELLVPDTLPTSAESSRSSSSTWVELYIESVYIVNVL