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Spg018888 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018888
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationscaffold3:21257199..21258397
RNA-Seq ExpressionSpg018888
SyntenySpg018888
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037251.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.3e-3671.88Show/hide
Query:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHI-VNVLLLSKSGYVRAAP--C--GSTGIVRGDDVCWLHAVFRAKLAGGPGGG
        PLSTL V  DNDAVVEIELPV D LPTSAES  S+SSTW ELY  SVH+ + V L  K   VRAA   C  GS GIVRGDDVCWLHAVF+AK  GGP GG
Subjt:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHI-VNVLLLSKSGYVRAAP--C--GSTGIVRGDDVCWLHAVFRAKLAGGPGGG

Query:  VTTWSHATTSQQTTQAESGRDAGSYPKS
        VTTWSHATT  QTTQAE G DAGSYP+S
Subjt:  VTTWSHATTSQQTTQAESGRDAGSYPKS

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-2963.11Show/hide
Query:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHI-----VNVLLLSKSGYVRAAPCGSTGIVRGDDVCWLHAVFRAKLAGGPGGG
        PLSTL VLRDNDAVVEIELPVPD LPTSAESS S+SSTW ELY ESVH+         ++S+   V +   GSTGIVRGDDVCWLHAVFRAK  GGPGGG
Subjt:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHI-----VNVLLLSKSGYVRAAPCGSTGIVRGDDVCWLHAVFRAKLAGGPGGG

Query:  VTTWS--HATTSQQTTQAESGR
        VTT    H   +    +  +GR
Subjt:  VTTWS--HATTSQQTTQAESGR

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]4.2e-3064.46Show/hide
Query:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHIVNVLLLSKSGYVRAAPCGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWS
        PLSTL VLRDNDAV EIELPVPD L TSAESS S+S                               S GIVRGDDVCWLHA+FRAK+ GGPGGGVTTWS
Subjt:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHIVNVLLLSKSGYVRAAPCGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWS

Query:  HATTSQQTTQAESGRDAGSYP
        HATT QQTTQAESG DAGSYP
Subjt:  HATTSQQTTQAESGRDAGSYP

TYK07530.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.3e-3671.88Show/hide
Query:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHI-VNVLLLSKSGYVRAAP--C--GSTGIVRGDDVCWLHAVFRAKLAGGPGGG
        PLSTL V  DNDAVVEIELPV D LPTSAES  S+SSTW ELY  SVH+ + V L  K   VRAA   C  GS GIVRGDDVCWLHAVF+AK  GGP GG
Subjt:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHI-VNVLLLSKSGYVRAAP--C--GSTGIVRGDDVCWLHAVFRAKLAGGPGGG

Query:  VTTWSHATTSQQTTQAESGRDAGSYPKS
        VTTWSHATT  QTTQAE G DAGSYP+S
Subjt:  VTTWSHATTSQQTTQAESGRDAGSYPKS

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.6e-2963.11Show/hide
Query:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHI-----VNVLLLSKSGYVRAAPCGSTGIVRGDDVCWLHAVFRAKLAGGPGGG
        PLSTL VLRDNDAVVEIELPVPD LPTSAESS S+SSTW ELY ESVH+         ++S+   V +   GSTGIVRGDDVCWLHAVFRAK  GGPGGG
Subjt:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHI-----VNVLLLSKSGYVRAAPCGSTGIVRGDDVCWLHAVFRAKLAGGPGGG

Query:  VTTWS--HATTSQQTTQAESGR
        VTT    H   +    +  +GR
Subjt:  VTTWS--HATTSQQTTQAESGR

TrEMBL top hitse value%identityAlignment
A0A5A7T6M8 DNA/RNA polymerases superfamily protein1.1e-3671.88Show/hide
Query:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHI-VNVLLLSKSGYVRAAP--C--GSTGIVRGDDVCWLHAVFRAKLAGGPGGG
        PLSTL V  DNDAVVEIELPV D LPTSAES  S+SSTW ELY  SVH+ + V L  K   VRAA   C  GS GIVRGDDVCWLHAVF+AK  GGP GG
Subjt:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHI-VNVLLLSKSGYVRAAP--C--GSTGIVRGDDVCWLHAVFRAKLAGGPGGG

Query:  VTTWSHATTSQQTTQAESGRDAGSYPKS
        VTTWSHATT  QTTQAE G DAGSYP+S
Subjt:  VTTWSHATTSQQTTQAESGRDAGSYPKS

A0A5A7V9N3 Reverse transcriptase7.7e-3063.11Show/hide
Query:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHI-----VNVLLLSKSGYVRAAPCGSTGIVRGDDVCWLHAVFRAKLAGGPGGG
        PLSTL VLRDNDAVVEIELPVPD LPTSAESS S+SSTW ELY ESVH+         ++S+   V +   GSTGIVRGDDVCWLHAVFRAK  GGPGGG
Subjt:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHI-----VNVLLLSKSGYVRAAPCGSTGIVRGDDVCWLHAVFRAKLAGGPGGG

Query:  VTTWS--HATTSQQTTQAESGR
        VTT    H   +    +  +GR
Subjt:  VTTWS--HATTSQQTTQAESGR

A0A5D3BNX1 Zf-CCHC domain-containing protein2.0e-3064.46Show/hide
Query:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHIVNVLLLSKSGYVRAAPCGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWS
        PLSTL VLRDNDAV EIELPVPD L TSAESS S+S                               S GIVRGDDVCWLHA+FRAK+ GGPGGGVTTWS
Subjt:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHIVNVLLLSKSGYVRAAPCGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWS

Query:  HATTSQQTTQAESGRDAGSYP
        HATT QQTTQAESG DAGSYP
Subjt:  HATTSQQTTQAESGRDAGSYP

A0A5D3C867 DNA/RNA polymerases superfamily protein1.1e-3671.88Show/hide
Query:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHI-VNVLLLSKSGYVRAAP--C--GSTGIVRGDDVCWLHAVFRAKLAGGPGGG
        PLSTL V  DNDAVVEIELPV D LPTSAES  S+SSTW ELY  SVH+ + V L  K   VRAA   C  GS GIVRGDDVCWLHAVF+AK  GGP GG
Subjt:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHI-VNVLLLSKSGYVRAAP--C--GSTGIVRGDDVCWLHAVFRAKLAGGPGGG

Query:  VTTWSHATTSQQTTQAESGRDAGSYPKS
        VTTWSHATT  QTTQAE G DAGSYP+S
Subjt:  VTTWSHATTSQQTTQAESGRDAGSYPKS

A0A5D3DSY7 Putative Retrotransposon protein7.7e-3063.11Show/hide
Query:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHI-----VNVLLLSKSGYVRAAPCGSTGIVRGDDVCWLHAVFRAKLAGGPGGG
        PLSTL VLRDNDAVVEIELPVPD LPTSAESS S+SSTW ELY ESVH+         ++S+   V +   GSTGIVRGDDVCWLHAVFRAK  GGPGGG
Subjt:  PLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHI-----VNVLLLSKSGYVRAAPCGSTGIVRGDDVCWLHAVFRAKLAGGPGGG

Query:  VTTWS--HATTSQQTTQAESGR
        VTT    H   +    +  +GR
Subjt:  VTTWS--HATTSQQTTQAESGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATATTCCGTTGTCGACGTTGAGAGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATCCACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACATGGTCGGAGTTGTATATTGAGTCTGTTCATATTGTAAACGTTTTGTTACTTTCCAAATCAGGTTATGTCAGGGCTGCACCATGTGGGTCAACAGGGATCG
TTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGAGTCATGCCACCACGTCCCAGCAGACG
ACGCAGGCAGAATCAGGACGGGACGCAGGATCCTACCCAAAGTCAATCTGA
mRNA sequenceShow/hide mRNA sequence
TATATTCCGTTGTCGACGTTGAGAGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATCCACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACATGGTCGGAGTTGTATATTGAGTCTGTTCATATTGTAAACGTTTTGTTACTTTCCAAATCAGGTTATGTCAGGGCTGCACCATGTGGGTCAACAGGGATCG
TTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGAGTCATGCCACCACGTCCCAGCAGACG
ACGCAGGCAGAATCAGGACGGGACGCAGGATCCTACCCAAAGTCAATCTGA
Protein sequenceShow/hide protein sequence
YIPLSTLRVLRDNDAVVEIELPVPDPLPTSAESSRSSSSTWSELYIESVHIVNVLLLSKSGYVRAAPCGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWSHATTSQQT
TQAESGRDAGSYPKSI