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Spg018904 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018904
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProtein YIP
Genome locationscaffold12:26058308..26061810
RNA-Seq ExpressionSpg018904
SyntenySpg018904
Gene Ontology termsGO:0005802 - trans-Golgi network (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR006977 - Yip1 domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG4942560.1 hypothetical protein JHK85_047206 [Glycine max]5.9e-3796.51Show/hide
Query:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID
        GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNV+VK+VVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVG LIIAID
Subjt:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID

XP_004143629.1 protein YIPF6 homolog [Cucumis sativus]4.5e-3797.67Show/hide
Query:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID
        GGHIIFFQSLSLLGYCLFPLD+GALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVG LIIAID
Subjt:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID

XP_007154772.1 hypothetical protein PHAVU_003G146500g [Phaseolus vulgaris]5.9e-3796.51Show/hide
Query:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID
        GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNV+VK+VVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVG LIIAID
Subjt:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID

XP_014505651.1 protein YIPF6 homolog [Vigna radiata var. radiata]5.9e-3796.51Show/hide
Query:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID
        GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNV+VK+VVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVG LIIAID
Subjt:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID

XP_038876122.1 protein YIPF6 homolog [Benincasa hispida]4.5e-3797.67Show/hide
Query:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID
        GGHIIFFQSLSLLGYCLFPLD+GALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVG LIIAID
Subjt:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID

TrEMBL top hitse value%identityAlignment
A0A0A0KL60 Protein YIP2.2e-3797.67Show/hide
Query:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID
        GGHIIFFQSLSLLGYCLFPLD+GALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVG LIIAID
Subjt:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID

A0A1S3UHZ4 Protein YIP2.8e-3796.51Show/hide
Query:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID
        GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNV+VK+VVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVG LIIAID
Subjt:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID

A0A371IG99 Protein YIP2.8e-3796.51Show/hide
Query:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID
        GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNV+VK+VVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVG LIIAID
Subjt:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID

A0A5D3BPX9 Protein YIP2.8e-3796.51Show/hide
Query:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID
        GGHIIFFQSLSLLGYCLFPLD+GALICMLKDNV+VKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVG LIIAID
Subjt:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID

I1MSR6 Protein YIP2.8e-3796.51Show/hide
Query:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID
        GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNV+VK+VVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVG LIIAID
Subjt:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID

SwissProt top hitse value%identityAlignment
O64614 Protein YIP4a3.6e-3791.86Show/hide
Query:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID
        GGHIIFFQSLSLLGYCLFPLDVGA+ICMLKDNV++K+VVV VTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVG LIIAI+
Subjt:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID

Q28CH8 Protein YIPF63.0e-1240.86Show/hide
Query:  GGHIIFFQSLSLLGYCLFPLDVGALICML-------KDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID
        GG I FFQSL +LGYC+ PL V  L+C L         + +V++VVV V  AWS++A+  F++ +  P R+ALA+YP+FL Y  +  +++  +
Subjt:  GGHIIFFQSLSLLGYCLFPLDVGALICML-------KDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID

Q4QQU5 Protein YIPF66.8e-1245.56Show/hide
Query:  GGHIIFFQSLSLLGYCLFPLDVGALICML-------KDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLII
        GG+I FFQSL +LGYC+ PL++  LIC L         N ++++ VV V  AWS  A+  F++    P RKALA+YPVFL Y  V  +I+
Subjt:  GGHIIFFQSLSLLGYCLFPLDVGALICML-------KDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLII

Q93VH1 Protein YIP4b8.0e-3790.7Show/hide
Query:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID
        GGHIIFFQSLSLLGYCLFPLDVGA+ICMLKDNV++K+VVV VTLAWSSWAAYPFMS+AVNPRRKALALYPVFLMYVSVG LIIAI+
Subjt:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID

Q96EC8 Protein YIPF68.9e-1246.67Show/hide
Query:  GGHIIFFQSLSLLGYCLFPLDVGALIC---MLKD----NVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLII
        GG+I FFQSL +LGYC+ PL V  LIC   +L D    N +V++ VV V  AWS  A+  F++ +  P R+ALA+YPVFL Y  +  +I+
Subjt:  GGHIIFFQSLSLLGYCLFPLDVGALIC---MLKD----NVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLII

Arabidopsis top hitse value%identityAlignment
AT2G18840.1 Integral membrane Yip1 family protein2.5e-3891.86Show/hide
Query:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID
        GGHIIFFQSLSLLGYCLFPLDVGA+ICMLKDNV++K+VVV VTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVG LIIAI+
Subjt:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID

AT4G30260.1 Integral membrane Yip1 family protein5.6e-3890.7Show/hide
Query:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID
        GGHIIFFQSLSLLGYCLFPLDVGA+ICMLKDNV++K+VVV VTLAWSSWAAYPFMS+AVNPRRKALALYPVFLMYVSVG LIIAI+
Subjt:  GGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKIVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTCGTTCCAGATCTGAAACGAGGGGGATTTCCCCTTCGTTTCAGGTCGTTCCCTTCGATTTCAGCCGCGCGTGCGAGGACAGAAGCTTCTTACGGCGGGTCTGG
GTTACAAACGAGCAGCGACGGCTTTGTGTTACGTACAAGCAGCGGCGCCGGTGGATCTGAAGCTTCTTACGGCGAGTCTGGGTTACAAATGAGCAGCGGCGGTTCTGGAG
GTGGACATATAATTTTCTTTCAGAGTTTGAGTCTTCTGGGATATTGCCTGTTTCCTCTAGACGTTGGAGCTTTGATCTGCATGTTGAAGGACAATGTAGTAGTGAAGATA
GTTGTGGTATGTGTGACCTTAGCATGGAGTTCTTGGGCTGCATATCCTTTCATGAGTTCAGCAGTGAACCCAAGAAGAAAAGCTCTTGCACTCTATCCTGTGTTCCTTAT
GTATGTATCAGTTGGTCTTCTCATCATTGCCATCGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTCGTTCCAGATCTGAAACGAGGGGGATTTCCCCTTCGTTTCAGGTCGTTCCCTTCGATTTCAGCCGCGCGTGCGAGGACAGAAGCTTCTTACGGCGGGTCTGG
GTTACAAACGAGCAGCGACGGCTTTGTGTTACGTACAAGCAGCGGCGCCGGTGGATCTGAAGCTTCTTACGGCGAGTCTGGGTTACAAATGAGCAGCGGCGGTTCTGGAG
GTGGACATATAATTTTCTTTCAGAGTTTGAGTCTTCTGGGATATTGCCTGTTTCCTCTAGACGTTGGAGCTTTGATCTGCATGTTGAAGGACAATGTAGTAGTGAAGATA
GTTGTGGTATGTGTGACCTTAGCATGGAGTTCTTGGGCTGCATATCCTTTCATGAGTTCAGCAGTGAACCCAAGAAGAAAAGCTCTTGCACTCTATCCTGTGTTCCTTAT
GTATGTATCAGTTGGTCTTCTCATCATTGCCATCGATTGA
Protein sequenceShow/hide protein sequence
MGFVPDLKRGGFPLRFRSFPSISAARARTEASYGGSGLQTSSDGFVLRTSSGAGGSEASYGESGLQMSSGGSGGGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVVVKI
VVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGLLIIAID