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Spg018906 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018906
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionserine/arginine-rich-splicing factor SR34-like
Genome locationscaffold12:26083179..26085376
RNA-Seq ExpressionSpg018906
SyntenySpg018906
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147616.1 uncharacterized protein LOC101221869 isoform X2 [Cucumis sativus]3.1e-2549.02Show/hide
Query:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLESGKLETTSFSKGLLIYIFL--
        E  K+TMLSQ+VMFR QV +LH+LY VQRILMQNFGF+ELDRC FKK GI PTFM YA+P RYDPFMKET VSS+CM E    +      G L       
Subjt:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLESGKLETTSFSKGLLIYIFL--

Query:  QISTLGSLYGRIAHIDLKV--PPRPPDYAFVEF--------EDVEDAQDAIRG
        Q  +L  L      +DLK+  P +  D   + +        E+V D +D++ G
Subjt:  QISTLGSLYGRIAHIDLKV--PPRPPDYAFVEF--------EDVEDAQDAIRG

XP_008437122.1 PREDICTED: uncharacterized protein LOC103482637 isoform X2 [Cucumis melo]8.3e-2649.67Show/hide
Query:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLESGKLETTSFSKGLLIYIFL--
        E  K+TMLSQ+VMFR QV +LH+LY VQRILMQNFGFEELDRC FKK GI PTFM YA+P RYDPF KET VSS+CMLE    +      G L       
Subjt:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLESGKLETTSFSKGLLIYIFL--

Query:  QISTLGSLYGRIAHIDLKV--PPRPPDYAFVEF--------EDVEDAQDAIRG
        Q  +L  L      +DLK+  P +  D   + +        E+V D +D++ G
Subjt:  QISTLGSLYGRIAHIDLKV--PPRPPDYAFVEF--------EDVEDAQDAIRG

XP_023532649.1 uncharacterized protein LOC111794749 isoform X1 [Cucurbita pepo subsp. pepo]5.4e-2577.22Show/hide
Query:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLE
        +  K+TMLSQ+VMFRNQVLELHRLY VQRILMQNFGFEE DR  F+K G+K TFM YANPARYDPFMKETEV S+ ML+
Subjt:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLE

XP_031742261.1 uncharacterized protein LOC101221869 isoform X1 [Cucumis sativus]3.1e-2549.02Show/hide
Query:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLESGKLETTSFSKGLLIYIFL--
        E  K+TMLSQ+VMFR QV +LH+LY VQRILMQNFGF+ELDRC FKK GI PTFM YA+P RYDPFMKET VSS+CM E    +      G L       
Subjt:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLESGKLETTSFSKGLLIYIFL--

Query:  QISTLGSLYGRIAHIDLKV--PPRPPDYAFVEF--------EDVEDAQDAIRG
        Q  +L  L      +DLK+  P +  D   + +        E+V D +D++ G
Subjt:  QISTLGSLYGRIAHIDLKV--PPRPPDYAFVEF--------EDVEDAQDAIRG

XP_038875422.1 uncharacterized protein LOC120067884 [Benincasa hispida]1.5e-2779.75Show/hide
Query:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLE
        E  K+TMLSQ+VMFR QVL+LH+LY VQRILMQNFGF+ELDRCSFKK G+KPTFM YA P RYDP MKETEVSS+CMLE
Subjt:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLE

TrEMBL top hitse value%identityAlignment
A0A0A0KMU7 Uncharacterized protein1.5e-2549.02Show/hide
Query:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLESGKLETTSFSKGLLIYIFL--
        E  K+TMLSQ+VMFR QV +LH+LY VQRILMQNFGF+ELDRC FKK GI PTFM YA+P RYDPFMKET VSS+CM E    +      G L       
Subjt:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLESGKLETTSFSKGLLIYIFL--

Query:  QISTLGSLYGRIAHIDLKV--PPRPPDYAFVEF--------EDVEDAQDAIRG
        Q  +L  L      +DLK+  P +  D   + +        E+V D +D++ G
Subjt:  QISTLGSLYGRIAHIDLKV--PPRPPDYAFVEF--------EDVEDAQDAIRG

A0A1S3ASW5 uncharacterized protein LOC103482637 isoform X24.0e-2649.67Show/hide
Query:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLESGKLETTSFSKGLLIYIFL--
        E  K+TMLSQ+VMFR QV +LH+LY VQRILMQNFGFEELDRC FKK GI PTFM YA+P RYDPF KET VSS+CMLE    +      G L       
Subjt:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLESGKLETTSFSKGLLIYIFL--

Query:  QISTLGSLYGRIAHIDLKV--PPRPPDYAFVEF--------EDVEDAQDAIRG
        Q  +L  L      +DLK+  P +  D   + +        E+V D +D++ G
Subjt:  QISTLGSLYGRIAHIDLKV--PPRPPDYAFVEF--------EDVEDAQDAIRG

A0A6J1DQD6 uncharacterized protein LOC1110233623.4e-2575Show/hide
Query:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLE--SGK
        E  K+TMLSQ+VMFR QVLELHRLY VQRILMQ+F FEE DRCSFKK GIKPTFM Y NP RYDP +KET+ SS+ MLE  SGK
Subjt:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLE--SGK

A0A6J1K4B3 uncharacterized protein LOC111491562 isoform X11.7e-2475.95Show/hide
Query:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLE
        +  K+TMLSQ+VMFRNQVLELHRLY VQRILMQNFG EE DR  F+K G+K TFM YANPARYDPFMKETEV S+ ML+
Subjt:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLE

A0A6J1KAE2 uncharacterized protein LOC111491562 isoform X31.7e-2475.95Show/hide
Query:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLE
        +  K+TMLSQ+VMFRNQVLELHRLY VQRILMQNFG EE DR  F+K G+K TFM YANPARYDPFMKETEV S+ ML+
Subjt:  EIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGIKPTFMQYANPARYDPFMKETEVSSVCMLE

SwissProt top hitse value%identityAlignment
A2RVS6 Serine/arginine-rich splicing factor SR34A3.2e-1270.83Show/hide
Query:  YGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV
        YGRI  I+LKVPPRPP Y FVEFE   DA+DAI+G DGY+ DG RLRV
Subjt:  YGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV

F4JHI7 Serine/arginine-rich splicing factor SR34B1.1e-1567.86Show/hide
Query:  QISTLGSLYGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV
        ++  L S YG +  IDLK+PPRPP YAFVEFED  DA DAI G DGYDFDGH LRV
Subjt:  QISTLGSLYGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV

O22315 Serine/arginine-rich-splicing factor SR341.6e-1669.64Show/hide
Query:  QISTLGSLYGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV
        ++  L S YG +  IDLKVPPRPP YAFVEF+D  DA+DAI G DGYDFDGHRLRV
Subjt:  QISTLGSLYGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV

Q6NYA0 Serine/arginine-rich splicing factor 1B4.3e-0962.5Show/hide
Query:  YGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV
        YG I  IDLK     P +AFVEFED  DA+DA+ G DGYD+DG+RLRV
Subjt:  YGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV

Q9XFR5 Serine/arginine-rich splicing factor SR304.4e-1467.86Show/hide
Query:  QISTLGSLYGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV
        ++  L   YG I  IDLK+PPRPP YAFVEFED  DA DAI G DGYDFDG RLRV
Subjt:  QISTLGSLYGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV

Arabidopsis top hitse value%identityAlignment
AT1G02840.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-1769.64Show/hide
Query:  QISTLGSLYGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV
        ++  L S YG +  IDLKVPPRPP YAFVEF+D  DA+DAI G DGYDFDGHRLRV
Subjt:  QISTLGSLYGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV

AT1G02840.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-1769.64Show/hide
Query:  QISTLGSLYGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV
        ++  L S YG +  IDLKVPPRPP YAFVEF+D  DA+DAI G DGYDFDGHRLRV
Subjt:  QISTLGSLYGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV

AT1G02840.3 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-1769.64Show/hide
Query:  QISTLGSLYGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV
        ++  L S YG +  IDLKVPPRPP YAFVEF+D  DA+DAI G DGYDFDGHRLRV
Subjt:  QISTLGSLYGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV

AT4G02430.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.5e-1767.86Show/hide
Query:  QISTLGSLYGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV
        ++  L S YG +  IDLK+PPRPP YAFVEFED  DA DAI G DGYDFDGH LRV
Subjt:  QISTLGSLYGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV

AT4G02430.2 RNA-binding (RRM/RBD/RNP motifs) family protein7.5e-1767.86Show/hide
Query:  QISTLGSLYGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV
        ++  L S YG +  IDLK+PPRPP YAFVEFED  DA DAI G DGYDFDGH LRV
Subjt:  QISTLGSLYGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCCTACCCTCTCTATGGCACGAGAGAGACTTTTGTTTGTTGGTCGGACCTCAAACAGTCTCCTCAAGAAGTCTCAAAGATATACCGGTGTAACCAATTGGTGGTG
TTCGCACAAGAAGGTTGCTGCGCTTTCGATCTCACAAGCAAGAAAAGGCGAATCAATCAAGGCTTCCTACGAAATATTTAAGGAAACCATGCTGAGTCAGAAGGTTATGT
TTAGGAATCAGGTTCTTGAATTACATCGGCTGTACTGTGTACAACGGATACTAATGCAGAATTTTGGCTTTGAGGAGCTTGATCGATGCAGTTTTAAGAAAGTGGGGATA
AAACCAACTTTCATGCAATATGCAAATCCTGCAAGATATGATCCATTTATGAAAGAAACTGAAGTTTCCTCGGTTTGCATGCTTGAAAGTGGCAAGCTAGAAACTACAAG
CTTCAGCAAAGGCCTCTTGATTTACATCTTCCTGCAGATCAGTACGTTAGGCTCATTGTATGGTCGCATAGCCCACATTGATCTCAAGGTTCCACCAAGACCTCCTGATT
ATGCATTTGTTGAGTTTGAAGATGTGGAAGATGCTCAAGATGCAATTCGTGGTCCTGATGGCTATGATTTTGATGGCCATAGGTTGCGAGTGAGGCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACCCTACCCTCTCTATGGCACGAGAGAGACTTTTGTTTGTTGGTCGGACCTCAAACAGTCTCCTCAAGAAGTCTCAAAGATATACCGGTGTAACCAATTGGTGGTG
TTCGCACAAGAAGGTTGCTGCGCTTTCGATCTCACAAGCAAGAAAAGGCGAATCAATCAAGGCTTCCTACGAAATATTTAAGGAAACCATGCTGAGTCAGAAGGTTATGT
TTAGGAATCAGGTTCTTGAATTACATCGGCTGTACTGTGTACAACGGATACTAATGCAGAATTTTGGCTTTGAGGAGCTTGATCGATGCAGTTTTAAGAAAGTGGGGATA
AAACCAACTTTCATGCAATATGCAAATCCTGCAAGATATGATCCATTTATGAAAGAAACTGAAGTTTCCTCGGTTTGCATGCTTGAAAGTGGCAAGCTAGAAACTACAAG
CTTCAGCAAAGGCCTCTTGATTTACATCTTCCTGCAGATCAGTACGTTAGGCTCATTGTATGGTCGCATAGCCCACATTGATCTCAAGGTTCCACCAAGACCTCCTGATT
ATGCATTTGTTGAGTTTGAAGATGTGGAAGATGCTCAAGATGCAATTCGTGGTCCTGATGGCTATGATTTTGATGGCCATAGGTTGCGAGTGAGGCACTAA
Protein sequenceShow/hide protein sequence
MDPTLSMARERLLFVGRTSNSLLKKSQRYTGVTNWWCSHKKVAALSISQARKGESIKASYEIFKETMLSQKVMFRNQVLELHRLYCVQRILMQNFGFEELDRCSFKKVGI
KPTFMQYANPARYDPFMKETEVSSVCMLESGKLETTSFSKGLLIYIFLQISTLGSLYGRIAHIDLKVPPRPPDYAFVEFEDVEDAQDAIRGPDGYDFDGHRLRVRH