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Spg018907 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018907
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCACTA en-spm transposon protein
Genome locationscaffold12:26194208..26196679
RNA-Seq ExpressionSpg018907
SyntenySpg018907
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046503.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.6e-0938.1Show/hide
Query:  MLGGPHYIVELVNVGYIGHALHNVDLSC---------STLQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGLEFRNSVKRK----RNWDRFEPVRTPPLW
        +LG   YIVELVNVG  G ALHN DLSC         S +Q+ +++ ++E DV  LH +FR+KL G PG G+        K    + + R     + P+ 
Subjt:  MLGGPHYIVELVNVGYIGHALHNVDLSC---------STLQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGLEFRNSVKRK----RNWDRFEPVRTPPLW

Query:  LHRYD
        +H++D
Subjt:  LHRYD

TYK02142.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa]1.9e-0750Show/hide
Query:  MLGGPHYIVELVNVGYIGHALHNVDLSCSTLQ--------------EGQRVSLEEDDVRWLHAIFRTKLA
        +L GP+YIVELVNVG  GHALHNVDLSC + +                ++V LEE D   LHA+F+ KLA
Subjt:  MLGGPHYIVELVNVGYIGHALHNVDLSCSTLQ--------------EGQRVSLEEDDVRWLHAIFRTKLA

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]6.9e-0534.62Show/hide
Query:  GGPHYIVELVNVGYIGHALHNVDLSC-----------------------------------STLQEGQRVSLE--------EDDVRWLHAIFRTKLAGGP
        GGPHYIV LVNVG  G  LH++D S                                    S ++   R+  E        E+DV WLHA+FR K+AGG 
Subjt:  GGPHYIVELVNVGYIGHALHNVDLSC-----------------------------------STLQEGQRVSLE--------EDDVRWLHAIFRTKLAGGP

Query:  GGGL
        GGG+
Subjt:  GGGL

TrEMBL top hitse value%identityAlignment
A0A5D3BRV3 Retrovirus-related Pol polyprotein from transposon TNT 1-947.7e-1038.1Show/hide
Query:  MLGGPHYIVELVNVGYIGHALHNVDLSC---------STLQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGLEFRNSVKRK----RNWDRFEPVRTPPLW
        +LG   YIVELVNVG  G ALHN DLSC         S +Q+ +++ ++E DV  LH +FR+KL G PG G+        K    + + R     + P+ 
Subjt:  MLGGPHYIVELVNVGYIGHALHNVDLSC---------STLQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGLEFRNSVKRK----RNWDRFEPVRTPPLW

Query:  LHRYD
        +H++D
Subjt:  LHRYD

A0A5D3BTL2 CACTA en-spm transposon protein9.4e-0850Show/hide
Query:  MLGGPHYIVELVNVGYIGHALHNVDLSCSTLQ--------------EGQRVSLEEDDVRWLHAIFRTKLA
        +L GP+YIVELVNVG  GHALHNVDLSC + +                ++V LEE D   LHA+F+ KLA
Subjt:  MLGGPHYIVELVNVGYIGHALHNVDLSCSTLQ--------------EGQRVSLEEDDVRWLHAIFRTKLA

A0A5D3CAC6 Uncharacterized protein3.3e-0534.62Show/hide
Query:  GGPHYIVELVNVGYIGHALHNVDLSC-----------------------------------STLQEGQRVSLE--------EDDVRWLHAIFRTKLAGGP
        GGPHYIV LVNVG  G  LH++D S                                    S ++   R+  E        E+DV WLHA+FR K+AGG 
Subjt:  GGPHYIVELVNVGYIGHALHNVDLSC-----------------------------------STLQEGQRVSLE--------EDDVRWLHAIFRTKLAGGP

Query:  GGGL
        GGG+
Subjt:  GGGL

A0A5D3DBQ7 G-box-binding factor 1-like6.3e-0485.71Show/hide
Query:  MLGGPHYIVELVNVGYIGHALHNVDLSC
        MLG PHYIVEL+NVG IG ALHNVDLSC
Subjt:  MLGGPHYIVELVNVGYIGHALHNVDLSC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGGCGGGCCCCACTACATCGTAGAGCTAGTAAACGTTGGTTATATTGGGCATGCCCTACACAACGTTGATTTGTCATGTTCAACGTTACAGGAGGGTCAACGGGT
ATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGATTGGAATTCCGTAATTCCGTAAAGCGGAAACGTA
ATTGGGACCGATTCGAACCAGTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTCTAGAGGCAGGAGACTGGTGGGAGTCTAGAGGGAGAATTCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGGCGGGCCCCACTACATCGTAGAGCTAGTAAACGTTGGTTATATTGGGCATGCCCTACACAACGTTGATTTGTCATGTTCAACGTTACAGGAGGGTCAACGGGT
ATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGATTGGAATTCCGTAATTCCGTAAAGCGGAAACGTA
ATTGGGACCGATTCGAACCAGTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTCTAGAGGCAGGAGACTGGTGGGAGTCTAGAGGGAGAATTCTCTGA
Protein sequenceShow/hide protein sequence
MLGGPHYIVELVNVGYIGHALHNVDLSCSTLQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGLEFRNSVKRKRNWDRFEPVRTPPLWLHRYDSETLEAGDWWESRGRIL