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Spg018908 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018908
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold12:26030228..26032674
RNA-Seq ExpressionSpg018908
SyntenySpg018908
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052217.1 hypothetical protein E6C27_scaffold207G00280 [Cucumis melo var. makuwa]1.2e-2656.82Show/hide
Query:  MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVSVGS
        +PRGNR +LQTGELDKT+SIDY+TEILS RLYGTVCTQ                 VEIEL VP+TLPTSAESS S S                      S
Subjt:  MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVSVGS

Query:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTANH
         GIVRGDDVCWLH VFRAK  GGPG GVT  +
Subjt:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTANH

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]8.9e-2761.9Show/hide
Query:  MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQVEIELPVPNTLPTSAESSRSSSSTWLELCIESV------TFQTR--------FNVSVGSTGI
        MPRGNR SLQT ELDKT+     T      L       V IELPVP+ LPTSAESS S+SSTWLEL  ESV      +F  +        FNVSVGSTGI
Subjt:  MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQVEIELPVPNTLPTSAESSRSSSSTWLELCIESV------TFQTR--------FNVSVGSTGI

Query:  VRGDDVCWLHAVFRAKLAGGPGGGVT
        VRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  VRGDDVCWLHAVFRAKLAGGPGGGVT

TYK01784.1 hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa]1.2e-2656.82Show/hide
Query:  MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVSVGS
        +PRGNR +LQTGELDKT+SIDY+TEILS RLYGTVCTQ                 VEIEL VP+TLPTSAESS S S                      S
Subjt:  MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVSVGS

Query:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTANH
         GIVRGDDVCWLH VFRAK  GGPG GVT  +
Subjt:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTANH

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-3261.7Show/hide
Query:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVS----
        PR NR SLQTGELDKT+SIDYMTEILS RL GTVCTQ                 VEIELPVP+TLPTSAE   S+SSTWLEL +ESV  +  F       
Subjt:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVS----

Query:  -------VGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTAN
                GS GIVRGDDVCWLHAVFRAK AGGP GGVT +
Subjt:  -------VGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTAN

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]2.3e-2762.4Show/hide
Query:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQVEIELPVPNTLPTSAESSRSSSSTWLELCIESV------TFQTR--------FNVSVGSTGIV
        PRGNR SLQTGELDKT+     T      L         IELPVP+TLPTSAESS S+SSTWLEL  ESV      +F  +        FNVSVGSTGIV
Subjt:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQVEIELPVPNTLPTSAESSRSSSSTWLELCIESV------TFQTR--------FNVSVGSTGIV

Query:  RGDDVCWLHAVFRAKLAGGPGGGVT
        RGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  RGDDVCWLHAVFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7UCL6 Reverse transcriptase domain-containing protein5.6e-2756.82Show/hide
Query:  MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVSVGS
        +PRGNR +LQTGELDKT+SIDY+TEILS RLYGTVCTQ                 VEIEL VP+TLPTSAESS S S                      S
Subjt:  MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVSVGS

Query:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTANH
         GIVRGDDVCWLH VFRAK  GGPG GVT  +
Subjt:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTANH

A0A5A7UT17 CCHC-type domain-containing protein4.3e-2761.9Show/hide
Query:  MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQVEIELPVPNTLPTSAESSRSSSSTWLELCIESV------TFQTR--------FNVSVGSTGI
        MPRGNR SLQT ELDKT+     T      L       V IELPVP+ LPTSAESS S+SSTWLEL  ESV      +F  +        FNVSVGSTGI
Subjt:  MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQVEIELPVPNTLPTSAESSRSSSSTWLELCIESV------TFQTR--------FNVSVGSTGI

Query:  VRGDDVCWLHAVFRAKLAGGPGGGVT
        VRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  VRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3BRJ2 Reverse transcriptase domain-containing protein5.6e-2756.82Show/hide
Query:  MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVSVGS
        +PRGNR +LQTGELDKT+SIDY+TEILS RLYGTVCTQ                 VEIEL VP+TLPTSAESS S S                      S
Subjt:  MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVSVGS

Query:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTANH
         GIVRGDDVCWLH VFRAK  GGPG GVT  +
Subjt:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTANH

A0A5D3CCC7 DNA/RNA polymerases superfamily protein5.2e-3361.7Show/hide
Query:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVS----
        PR NR SLQTGELDKT+SIDYMTEILS RL GTVCTQ                 VEIELPVP+TLPTSAE   S+SSTWLEL +ESV  +  F       
Subjt:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVS----

Query:  -------VGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTAN
                GS GIVRGDDVCWLHAVFRAK AGGP GGVT +
Subjt:  -------VGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTAN

A0A5D3CJX3 CCHC-type domain-containing protein1.1e-2762.4Show/hide
Query:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQVEIELPVPNTLPTSAESSRSSSSTWLELCIESV------TFQTR--------FNVSVGSTGIV
        PRGNR SLQTGELDKT+     T      L         IELPVP+TLPTSAESS S+SSTWLEL  ESV      +F  +        FNVSVGSTGIV
Subjt:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQVEIELPVPNTLPTSAESSRSSSSTWLELCIESV------TFQTR--------FNVSVGSTGIV

Query:  RGDDVCWLHAVFRAKLAGGPGGGVT
        RGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  RGDDVCWLHAVFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAGAGGAAATAGGTCGAGTCTACAAACTGGGGAACTAGATAAGACTATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACTGTGTGCAC
ACAGGTAGAGATCGAGCTCCCGGTGCCTAATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTGTATTGAGTCCGTTACTTTCC
AAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCAGTCTTTCGAGCTAAGCTAGCAGGTGGTCCGGGAGGGGGT
GTGACAGCCAACCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAGAGGAAATAGGTCGAGTCTACAAACTGGGGAACTAGATAAGACTATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACTGTGTGCAC
ACAGGTAGAGATCGAGCTCCCGGTGCCTAATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTGTATTGAGTCCGTTACTTTCC
AAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCAGTCTTTCGAGCTAAGCTAGCAGGTGGTCCGGGAGGGGGT
GTGACAGCCAACCATTAA
Protein sequenceShow/hide protein sequence
MPRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQVEIELPVPNTLPTSAESSRSSSSTWLELCIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGG
VTANH