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Spg018911 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018911
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold12:26913479..26915235
RNA-Seq ExpressionSpg018911
SyntenySpg018911
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]5.7e-0844.55Show/hide
Query:  VYKSNQKLYLVSCRVFEDEEF---------------------------DVPRGNRSSLQTREIDKT-----------------VEIELPVPDTLPTSAES
        +YK NQKLYLVSC VFE+EEF                           ++PRGNR SLQT E+DKT                 VEIELP P+ LPTSAES
Subjt:  VYKSNQKLYLVSCRVFEDEEF---------------------------DVPRGNRSSLQTREIDKT-----------------VEIELPVPDTLPTSAES

Query:  S
        S
Subjt:  S

KAA0056731.1 hypothetical protein E6C27_scaffold29G00280 [Cucumis melo var. makuwa]3.7e-0751.95Show/hide
Query:  VYKSNQKLYL---VSCRVFEDEEFDVPRGNRSSLQTREIDKT-----------------VEIELPVPDTLPTSAESS
        ++KS QKLYL   +  R+   E  ++PRGNRSSLQT E+DKT                 VEIELPVPDTLPTSAE+S
Subjt:  VYKSNQKLYL---VSCRVFEDEEFDVPRGNRSSLQTREIDKT-----------------VEIELPVPDTLPTSAESS

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]2.2e-0768.42Show/hide
Query:  VYKSNQKLYLVSCRVFEDEEFDVPRGNRSSLQTREIDKTVEIELPVPDTLPTSAESS
        V+KS+QKLYLV            PRGNR SLQTRE+DKT  IELPVPDTLPTSAESS
Subjt:  VYKSNQKLYLVSCRVFEDEEFDVPRGNRSSLQTREIDKTVEIELPVPDTLPTSAESS

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]4.3e-0844.55Show/hide
Query:  VYKSNQKLYLVSCRVFEDEEF---------------------------DVPRGNRSSLQTREIDKT-----------------VEIELPVPDTLPTSAES
        V++SNQ LYLVSCRVF  E+F                           ++PRGNRSSLQT ++DKT                 VEIELPVPDT PTSAES
Subjt:  VYKSNQKLYLVSCRVFEDEEF---------------------------DVPRGNRSSLQTREIDKT-----------------VEIELPVPDTLPTSAES

Query:  S
        S
Subjt:  S

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.9e-1147.29Show/hide
Query:  HLFPPKLSEHFKERVKEKEEE--EFQHRIFEQTRRIS---GVLWCFEHS----GVYKSNQKLYLVSCRVFEDEEFDV-PRGNRSSLQTREIDKT------
        H FP KL EHF+ERVKE+EEE    Q  + +++   S   G    F  +     V+KSNQKLYL      +  ++DV PRGNRSSLQT E+DKT      
Subjt:  HLFPPKLSEHFKERVKEKEEE--EFQHRIFEQTRRIS---GVLWCFEHS----GVYKSNQKLYLVSCRVFEDEEFDV-PRGNRSSLQTREIDKT------

Query:  -----------VEIELPVPDTLPTSAESS
                   VEIELPVPD LPTSA+SS
Subjt:  -----------VEIELPVPDTLPTSAESS

TrEMBL top hitse value%identityAlignment
A0A5A7UFD2 Uncharacterized protein2.8e-0844.55Show/hide
Query:  VYKSNQKLYLVSCRVFEDEEF---------------------------DVPRGNRSSLQTREIDKT-----------------VEIELPVPDTLPTSAES
        +YK NQKLYLVSC VFE+EEF                           ++PRGNR SLQT E+DKT                 VEIELP P+ LPTSAES
Subjt:  VYKSNQKLYLVSCRVFEDEEF---------------------------DVPRGNRSSLQTREIDKT-----------------VEIELPVPDTLPTSAES

Query:  S
        S
Subjt:  S

A0A5D3BQ75 Uncharacterized protein2.1e-0844.55Show/hide
Query:  VYKSNQKLYLVSCRVFEDEEF---------------------------DVPRGNRSSLQTREIDKT-----------------VEIELPVPDTLPTSAES
        V++SNQ LYLVSCRVF  E+F                           ++PRGNRSSLQT ++DKT                 VEIELPVPDT PTSAES
Subjt:  VYKSNQKLYLVSCRVFEDEEF---------------------------DVPRGNRSSLQTREIDKT-----------------VEIELPVPDTLPTSAES

Query:  S
        S
Subjt:  S

A0A5D3BZ50 Pentatricopeptide repeat-containing protein9.1e-1247.29Show/hide
Query:  HLFPPKLSEHFKERVKEKEEE--EFQHRIFEQTRRIS---GVLWCFEHS----GVYKSNQKLYLVSCRVFEDEEFDV-PRGNRSSLQTREIDKT------
        H FP KL EHF+ERVKE+EEE    Q  + +++   S   G    F  +     V+KSNQKLYL      +  ++DV PRGNRSSLQT E+DKT      
Subjt:  HLFPPKLSEHFKERVKEKEEE--EFQHRIFEQTRRIS---GVLWCFEHS----GVYKSNQKLYLVSCRVFEDEEFDV-PRGNRSSLQTREIDKT------

Query:  -----------VEIELPVPDTLPTSAESS
                   VEIELPVPD LPTSA+SS
Subjt:  -----------VEIELPVPDTLPTSAESS

A0A5D3DCA4 Uncharacterized protein1.8e-0751.95Show/hide
Query:  VYKSNQKLYL---VSCRVFEDEEFDVPRGNRSSLQTREIDKT-----------------VEIELPVPDTLPTSAESS
        ++KS QKLYL   +  R+   E  ++PRGNRSSLQT E+DKT                 VEIELPVPDTLPTSAE+S
Subjt:  VYKSNQKLYL---VSCRVFEDEEFDVPRGNRSSLQTREIDKT-----------------VEIELPVPDTLPTSAESS

A0A5D3DWP3 Uncharacterized protein1.0e-0768.42Show/hide
Query:  VYKSNQKLYLVSCRVFEDEEFDVPRGNRSSLQTREIDKTVEIELPVPDTLPTSAESS
        V+KS+QKLYLV            PRGNR SLQTRE+DKT  IELPVPDTLPTSAESS
Subjt:  VYKSNQKLYLVSCRVFEDEEFDVPRGNRSSLQTREIDKTVEIELPVPDTLPTSAESS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGGACAGCAAGACACCCACCACCGCTTCACCCATTATCAGCCCCATTTCTCATCTTTTTCCACCCAAACTTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGAA
AGAAGAAGAAGAATTTCAGCACAGGATTTTCGAGCAAACAAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTATATT
TGGTAAGTTGTAGAGTGTTCGAAGATGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAAATAGATAAGACAGTAGAGATCGAGCTCCCGGTG
CCTGATACACTGCCAACGTCTGCTGAAAGTTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGGACAGCAAGACACCCACCACCGCTTCACCCATTATCAGCCCCATTTCTCATCTTTTTCCACCCAAACTTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGAA
AGAAGAAGAAGAATTTCAGCACAGGATTTTCGAGCAAACAAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTATATT
TGGTAAGTTGTAGAGTGTTCGAAGATGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAAATAGATAAGACAGTAGAGATCGAGCTCCCGGTG
CCTGATACACTGCCAACGTCTGCTGAAAGTTCCTGA
Protein sequenceShow/hide protein sequence
MEMDSKTPTTASPIISPISHLFPPKLSEHFKERVKEKEEEEFQHRIFEQTRRISGVLWCFEHSGVYKSNQKLYLVSCRVFEDEEFDVPRGNRSSLQTREIDKTVEIELPV
PDTLPTSAESS