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Spg018924 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018924
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold12:26826675..26828000
RNA-Seq ExpressionSpg018924
SyntenySpg018924
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.5e-0855.07Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSSMFQ---EGQRVS-------LEEDEVRWLHAIFRTKLTGGLGGGV
        +VEIELP+PDTLPTSAESS S+SS++ +   E   V        +  D+V WLHA+FR K TGG GGGV
Subjt:  LVEIELPVPDTLPTSAESSRSSSSSMFQ---EGQRVS-------LEEDEVRWLHAIFRTKLTGGLGGGV

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.7e-0856.52Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSS---MFQEGQRVSL-------EEDEVRWLHAIFRTKLTGGLGGGV
        +VEIELPVPDTLPTSAESS S+SS+   ++ E   V +        ED+V WLHA+FR K  GG GGGV
Subjt:  LVEIELPVPDTLPTSAESSRSSSSS---MFQEGQRVSL-------EEDEVRWLHAIFRTKLTGGLGGGV

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]4.9e-1043.48Show/hide
Query:  GVLGGPHYIVGLV----------------EIELPVPDTLPTSAESSRSSSSSMFQ-------------EGQRVSLE--------EDEVRWLHAIFRTKLT
        GV GGPHYIVGLV                EIEL VPDTLPTSAESS S+SS+  +                R+  E        E++V WLHA+FR K+ 
Subjt:  GVLGGPHYIVGLV----------------EIELPVPDTLPTSAESSRSSSSSMFQ-------------EGQRVSLE--------EDEVRWLHAIFRTKLT

Query:  GGLGGGVTQLVSNSM
        GG GGGVT +   S+
Subjt:  GGLGGGVTQLVSNSM

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.5e-0855.07Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSSMFQ---EGQRVS-------LEEDEVRWLHAIFRTKLTGGLGGGV
        +VEIELP+PDTLPTSAESS S+SS++ +   E   V        +  D+V WLHA+FR K TGG GGGV
Subjt:  LVEIELPVPDTLPTSAESSRSSSSSMFQ---EGQRVS-------LEEDEVRWLHAIFRTKLTGGLGGGV

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.7e-0856.52Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSS---MFQEGQRVSL-------EEDEVRWLHAIFRTKLTGGLGGGV
        +VEIELPVPDTLPTSAESS S+SS+   ++ E   V +        ED+V WLHA+FR K  GG GGGV
Subjt:  LVEIELPVPDTLPTSAESSRSSSSS---MFQEGQRVSL-------EEDEVRWLHAIFRTKLTGGLGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.7e-0855.07Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSSMFQ---EGQRVS-------LEEDEVRWLHAIFRTKLTGGLGGGV
        +VEIELP+PDTLPTSAESS S+SS++ +   E   V        +  D+V WLHA+FR K TGG GGGV
Subjt:  LVEIELPVPDTLPTSAESSRSSSSSMFQ---EGQRVS-------LEEDEVRWLHAIFRTKLTGGLGGGV

A0A5A7VMG9 Reverse transcriptase1.3e-0856.52Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSS---MFQEGQRVSL-------EEDEVRWLHAIFRTKLTGGLGGGV
        +VEIELPVPDTLPTSAESS S+SS+   ++ E   V +        ED+V WLHA+FR K  GG GGGV
Subjt:  LVEIELPVPDTLPTSAESSRSSSSS---MFQEGQRVSL-------EEDEVRWLHAIFRTKLTGGLGGGV

A0A5D3CAC6 Uncharacterized protein2.4e-1043.48Show/hide
Query:  GVLGGPHYIVGLV----------------EIELPVPDTLPTSAESSRSSSSSMFQ-------------EGQRVSLE--------EDEVRWLHAIFRTKLT
        GV GGPHYIVGLV                EIEL VPDTLPTSAESS S+SS+  +                R+  E        E++V WLHA+FR K+ 
Subjt:  GVLGGPHYIVGLV----------------EIELPVPDTLPTSAESSRSSSSSMFQ-------------EGQRVSLE--------EDEVRWLHAIFRTKLT

Query:  GGLGGGVTQLVSNSM
        GG GGGVT +   S+
Subjt:  GGLGGGVTQLVSNSM

A0A5D3D150 Reverse transcriptase1.7e-0855.07Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSSMFQ---EGQRVS-------LEEDEVRWLHAIFRTKLTGGLGGGV
        +VEIELP+PDTLPTSAESS S+SS++ +   E   V        +  D+V WLHA+FR K TGG GGGV
Subjt:  LVEIELPVPDTLPTSAESSRSSSSSMFQ---EGQRVS-------LEEDEVRWLHAIFRTKLTGGLGGGV

A0A5D3DX39 Reverse transcriptase1.3e-0856.52Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSS---MFQEGQRVSL-------EEDEVRWLHAIFRTKLTGGLGGGV
        +VEIELPVPDTLPTSAESS S+SS+   ++ E   V +        ED+V WLHA+FR K  GG GGGV
Subjt:  LVEIELPVPDTLPTSAESSRSSSSS---MFQEGQRVSL-------EEDEVRWLHAIFRTKLTGGLGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTGTTGGGCGGGCCCCACTACATCGTAGGACTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTC
TATGTTTCAAGAGGGTCAACGGGTATCGTTAGAGGAGGACGAAGTTCGTTGGCTTCATGCCATCTTCCGGACTAAGCTAACAGGTGGTCTGGGAGGGGGTGTGACACAAT
TAGTGTCTAATTCGATGGACGTTGTAACTTGTAGAGTGTTCGAAAATGAAGAGTTTGTGGCCAAGAAGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTGTTGGGCGGGCCCCACTACATCGTAGGACTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTC
TATGTTTCAAGAGGGTCAACGGGTATCGTTAGAGGAGGACGAAGTTCGTTGGCTTCATGCCATCTTCCGGACTAAGCTAACAGGTGGTCTGGGAGGGGGTGTGACACAAT
TAGTGTCTAATTCGATGGACGTTGTAACTTGTAGAGTGTTCGAAAATGAAGAGTTTGTGGCCAAGAAGAAATAG
Protein sequenceShow/hide protein sequence
MGVLGGPHYIVGLVEIELPVPDTLPTSAESSRSSSSSMFQEGQRVSLEEDEVRWLHAIFRTKLTGGLGGGVTQLVSNSMDVVTCRVFENEEFVAKKK